Sündüz Keleş

Also affiliated with University of Wisconsin–Madison

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.8Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Papers

Driven by 43 papers — median percentile 24. Top paper: “Expanded encyclopaedias of DNA elements in the human and mouse genomes”.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Predicting gene expression in massively parallel reporter assays: A comparative study

Human Mutation(2017)10.1002/humu.23197

N/A

1.7DataRank · unranked

52 citations

Haoyang Zeng, Matthew D. Edwards, Gamze Gürsoy, Kevin Tian, R. Alan Harris +20 more

Pathogenic human variant that dislocates GATA2 zinc fingers disrupts hematopoietic gene expression and signaling networks

Journal of Clinical Investigation(2023)10.1172/jci162685

N/A

0.449DataRank · unranked

19 citations

Siqi Shen, Giovanni A. Botten, Thomas Olender, Koichi R. Katsumura, Kirby D. Johnson +15 more

Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders

Genome Research(2021)10.1101/gr.276137.121

N/A

0.442DataRank · unranked

18 citations

Andy Madrid, Qi Zhang, Kailei Chen, Lara Sak, Sündüz Keleş +2 more

Debiased personalized gene coexpression networks for population-scale scRNA-seq data

Genome Research(2023)10.1101/gr.277363.122

N/A

0.442DataRank · unranked

18 citations

Sündüz Keleş, Shan Lu

scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data

Bioinformatics(2022)10.1093/bioinformatics/btac372

N/A

0.373DataRank · unranked

11 citations

Ye Zheng, Sündüz Keleş, Siqi Shen

SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins

Genome biology(2020)10.1186/s13059-020-02039-7

N/A

0.345DataRank · unranked

9 citations

Sündüz Keleş, Fan Chen

Whole genome methylation sequencing in blood from persons with mild cognitive impairment and dementia due to Alzheimer's disease identifies cognitive status

Alzheimer s & Dementia(2025)10.1002/alz.14474

Top 51%

0.339DataRank

Top 51%7 citations

Ligia A. Papale, Phillip E. Bergmann, Coleman Breen, Lindsay R. Clark, Sanjay Asthana +5 more

Normalization and De-noising of Single-cell Hi-C Data with BandNorm and 3DVI

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.434870

N/A

0.330DataRank · unranked

8 citations

Siqi Shen, Sündüz Keleş, Ye Zheng

AdaLiftOver: high-resolution identification of orthologous regulatory elements with Adaptive liftOver

Bioinformatics(2023)10.1093/bioinformatics/btad149

N/A

0.292DataRank · unranked

6 citations

Siqi Shen, Sündüz Keleş, Chenyang Dong

Regulatory architecture of the RCA gene cluster captures an intragenic TAD boundary, CTCF-mediated chromatin looping and a long-range intergenic enhancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.16.941070

N/A

0.208DataRank · unranked

3 citations

Joshua S. Clayton, Rafael D. Acemel, Ye Zheng, Rhonda L. Taylor, Sündüz Keleş +7 more

Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms

Nature Communications(2025)10.1038/s41467-025-65195-z

N/A

0.165DataRank · unranked

2 citations

Siqi Shen, Christina M. Jurotich, Saritha S. D’Souza, Johnathan J. Caldon, Igor I. Slukvin +4 more

Generation of Hoxa11-3XFLAG and Hoxd11-3XFLAG alleles to investigate Hox11 genome-wide binding

Developmental Biology(2025)10.1016/j.ydbio.2025.05.013

N/A

0.104DataRank · unranked

1 citations

Jane Y. Song, Paul R. van Ginkel, Shuyang Chen, Corey Flynn, Sündüz Keleş +3 more

GEEES: inferring cell-specific gene–enhancer interactions from multi-modal single-cell data

Bioinformatics(2024)10.1093/bioinformatics/btae638

N/A

0.104DataRank · unranked

1 citations

Sündüz Keleş, Shuyang Chen

INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants

Genome biology(2021)10.1186/s13059-021-02450-8

N/A

0DataRank · unranked

7 citations

Shane P. Simonett, Sunyoung Shin, Donnie S. Stapleton, Kathryn L. Schueler, Gary A. Churchill +8 more

MLG: multilayer graph clustering for multi-condition scRNA-seq data

Nucleic Acids Research(2021)10.1093/nar/gkab823

N/A

0DataRank · unranked

3 citations

Daniel Conn, Shuyang Chen, Kirby D. Johnson, Emery H. Bresnick, Sündüz Keleş +1 more

Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.04.441625

N/A

0DataRank · unranked

0 citations

Andy Madrid, Qi Zhang, Kailei Chen, Lara Sak, Sündüz Keleş +2 more

scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.22.465520

N/A

0DataRank · unranked

0 citations

Ye Zheng, Sündüz Keleş, Siqi Shen

Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D

Genome biology(2022)10.1186/s13059-022-02774-z

N/A

0DataRank · unranked

51 citations

Siqi Shen, Sündüz Keleş, Ye Zheng

Regulatory Architecture of the RCA Gene Cluster Captures an Intragenic TAD Boundary, CTCF-Mediated Chromatin Looping and a Long-Range Intergenic Enhancer

Frontiers in Immunology(2022)10.3389/fimmu.2022.901747

N/A

0DataRank · unranked

11 citations

Joshua S. Clayton, Rafael D. Acemel, Ye Zheng, Rhonda L. Taylor, Sündüz Keleş +7 more

Secondary bile acids function through the vitamin D receptor in myeloid progenitors to promote myelopoiesis

Blood Advances(2023)10.1182/bloodadvances.2022009618

N/A

0DataRank · unranked

20 citations

Shan Lu, Julio E. Revilla, Md. Jashim Uddin, David N Oakland, Savannah G. Brovero +5 more

Whole genome methylation sequencing in blood identifies extensive differential DNA methylation in late‐onset dementia due to Alzheimer's disease

Alzheimer s & Dementia(2023)10.1002/alz.13514

N/A

0DataRank · unranked

19 citations

Ligia A. Papale, Lindsay R. Clark, Phillip E. Bergmann, Andy Madrid, Sanjay Asthana +5 more

MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing

Bioinformatics(2023)10.1093/bioinformatics/btad592

N/A

0DataRank · unranked

1 citations

Shan Lu, Shuchen Yan, Ferhat Ay, Öznur Taştan, Sündüz Keleş +1 more

Dozer: Debiased personalized gene co-expression networks for population-scale scRNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.25.538290

N/A

0DataRank · unranked

4 citations

Sündüz Keleş, Shan Lu

PUF partner interactions at a conserved interface shape the RNA-binding landscape and cell fate in Caenorhabditis elegans

Developmental Cell(2024)10.1016/j.devcel.2024.01.005

N/A

0DataRank · unranked

4 citations

Sarah L. Crittenden, Fan Chen, MaryGrace Linsley, Jennifer Woodworth, Peggy Kroll-Conner +5 more

Joint Tensor Modeling of Single Cell 3D Genome and Epigenetic Data with Muscle

Journal of the American Statistical Association(2024)10.1080/01621459.2024.2358557

N/A

0DataRank · unranked

3 citations

Sündüz Keleş, Kwangmoon Park

Integrative annotation scores of variants for impact on RNA binding protein activities

Bioinformatics(2024)10.1093/bioinformatics/btae181

Top 100%

0DataRank

Top 100%0 citations

Audrey P. Gasch, Sündüz Keleş, Jingqi Duan

Sex-Specific Differential DNA Methylation in Mild Cognitive Impairment and Alzheimer’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.15.654279

N/A

0DataRank · unranked

1 citations

Andy Madrid, Ligia A. Papale, Lindsay R. Clark, Sanjay Asthana, Sterling C. Johnson +4 more

Systematic Background Selection for Enhanced Contrastive Dimension Reduction

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.12.653541

N/A

0DataRank · unranked

0 citations

Zhongxuan Sun, Ruiqi Liao, Emery H. Bresnick, Sündüz Keleş, Kwangmoon Park

Sparse higher-order partial least squares for simultaneous variable selection, dimension reduction and tensor denoising

Biometrika(2025)10.1093/biomet/asaf082

N/A

0DataRank · unranked

0 citations

Sündüz Keleş, Kwangmoon Park

Beta Cell Dedifferentiation Induced by IRE1α Deletion Prevents Type 1 Diabetes

Cell Metabolism(2020)10.1016/j.cmet.2020.03.002

N/A

0DataRank · unranked

157 citations

Yong-Syu Lee, Quincy Eckert Harenda, Stefan Pietrzak, Hülya Zeynep Oktay, Sierra Schreiber +8 more

CTCF loss mediates unique DNA hypermethylation landscapes in human cancers

Clinical Epigenetics(2020)10.1186/s13148-020-00869-7

N/A

0DataRank · unranked

52 citations

Joseph Gawdzik, Mele Avilla, Bing Yang, John Svaren, Avtar Roopra +5 more

Discovering How Heme Controls Genome Function Through Heme-omics

Cell Reports(2020)10.1016/j.celrep.2020.107832

N/A

0DataRank · unranked

47 citations

Ye Zheng, Xin Liu, Yuannyu Zhang, Gretchen Seim, Nobuyuki Tanimura +8 more

GATA factor-regulated solute carrier ensemble reveals a nucleoside transporter-dependent differentiation mechanism

PLoS Genetics(2020)10.1371/journal.pgen.1009286

N/A

0DataRank · unranked

20 citations

Xiaoli Cai, Ruiqi Liao, Bin Mao, Daniel Conn, Charu Mehta +4 more

Constructing and deconstructing GATA2-regulated cell fate programs to establish developmental trajectories

The Journal of Experimental Medicine(2020)10.1084/jem.20191526

N/A

0DataRank · unranked

44 citations

Daniel Conn, Evgenia Shishkova, Koichi R. Katsumura, Peng Liu, Siqi Shen +10 more

PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments

Genome Research(2020)10.1101/gr.252445.119

N/A

0DataRank · unranked

2 citations

Alexandra A. Soukup, Emery H. Bresnick, Colin N. Dewey, Sündüz Keleş, Peng Liu

SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.08.085316

Top 100%

0DataRank

Top 100%0 citations

Sündüz Keleş, Fan Chen

A Statistical Framework for the Analysis of ChIP-Seq Data

UNC Libraries(2020)10.17615/883r-9941

N/A

0DataRank · unranked

0 citations

Stewart, Ron, Guangjin Pan, Pei Fen Kuan, Dongjun Chung, James A. Thomson +1 more

Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data

UNC Libraries(2020)10.17615/pfcm-n590

N/A

0DataRank · unranked

0 citations

Pei Fen Kuan, Colin N. Dewey, Rajendran Sanalkumar, Emery H. Bresnick, Bo Li +3 more

PKM2‐TMEM33 axis regulates lipid homeostasis in cancer cells by controlling SCAP stability

The EMBO Journal(2021)10.15252/embj.2021108065

N/A

0DataRank · unranked

68 citations

M Ma, Ang Gao, Fengfei Ma, Gui Ma, Peng Liu +9 more

Identification of direct transcriptional targets of NFATC2 that promote β cell proliferation

Journal of Clinical Investigation(2021)10.1172/jci144833

N/A

0DataRank · unranked

27 citations

Sunyoung Shin, Jacob A. Herring, Rhonda Bacher, Linsin A. Smith, Chenyang Dong +16 more

The SWI/SNF-Related, Matrix Associated, Actin-Dependent Regulator of Chromatin A4 Core Complex Represses Respiratory Syncytial Virus-Induced Syncytia Formation and Subepithelial Myofibroblast Transition

Frontiers in Immunology(2021)10.3389/fimmu.2021.633654

N/A

0DataRank · unranked

24 citations

Dianhua Qiao, Chenyang Dong, Morgan Mann, Robert Garofalo, Sündüz Keleş +2 more

Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder

PLoS Genetics(2021)10.1371/journal.pgen.1009309

N/A

0DataRank · unranked

23 citations

Yuchang Wu, Junha Shin, Ye Zheng, Alireza Fotuhi Siahpirani, Yupei Lin +8 more

Sündüz Keleş

Indexed papers

Top data-sharing exemplar

Papers