John C. Marioni

Wellcome Trust

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.1Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A roadmap for the Human Developmental Cell Atlas

Nature(2021)10.1038/s41586-021-03620-1

Top 6%

3.9DataRank

Top 6%194 citations

Deanne Taylor, Sten Linnarsson, Bruce J. Aronow, Samirkumar B. Amin, Roger A. Barker +53 more

Papers

Driven by 34 papers — median percentile 72. Top paper: “Toward a Common Coordinate Framework for the Human Body”.

Toward a Common Coordinate Framework for the Human Body

Cell(2019)10.1016/j.cell.2019.11.019

N/A

5.1DataRank · unranked

134 citations

Tim Stuart, Shila Ghazanfar, Tommaso Biancalani, Eyal Fisher, Andrew Butler +8 more

A roadmap for the Human Developmental Cell Atlas

Nature(2021)10.1038/s41586-021-03620-1

Top 6%

3.9DataRank

Top 6%194 citations

Deanne Taylor, Sten Linnarsson, Bruce J. Aronow, Samirkumar B. Amin, Roger A. Barker +53 more

The Human Cell Atlas White Paper

arXiv (Cornell University)(2018)10.17863/cam.40032

Top 10%

2.2DataRank

Top 10%41 citations

Sarah A. Teichmann, Orit Rozenblatt‐Rosen, Michael J. T. Stubbington, Kristin G. Ardlie, Ido Amit +76 more

Eleven grand challenges in single-cell data science

Genome Biology(2020)10.1186/s13059-020-1926-6

N/A

1.1DataRank · unranked

1396 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +49 more

Computational and analytical challenges in single-cell transcriptomics

Nature Reviews Genetics(2015)10.1038/nrg3833

N/A

1.1DataRank · unranked

1312 citations

Sarah A. Teichmann, John C. Marioni, Oliver Stegle

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

Nature Biotechnology(2015)10.1038/nbt.3102

N/A

1.1DataRank · unranked

1296 citations

Kedar N Natarajan, F Paolo Casale, Valentina Proserpio, Antonio Scialdone, Fabian Joachim Theis +6 more

Classification of low quality cells from single-cell RNA-seq data

Genome Biology(2016)10.1186/s13059-016-0888-1

N/A

1.0DataRank · unranked

788 citations

Jong Kyoung Kim, Aleksandra A. Kolodziejczyk, Frederik Otzen Bagger, John C. Marioni, Sarah A. Teichmann +3 more

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

Nature Biotechnology(2008)10.1038/nbt1414

N/A

0.971DataRank · unranked

647 citations

Vardhman K. Rakyan, Daniel J. Turner, David B. Jaffe, Alexandra P. Lewis, Eugene Kulesha +19 more

Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis

Nature Biotechnology(2021)10.1038/s41587-021-01006-2

N/A

0.881DataRank · unranked

355 citations

Shila Ghazanfar, Alsu Missarova, Noushin Koulena, Nico Pierson, Jonathan A. Griffiths +15 more

A reference human induced pluripotent stem cell line for large-scale collaborative studies

Cell stem cell(2022)10.1016/j.stem.2022.11.004

N/A

0.860DataRank · unranked

308 citations

Andrian Yang, Erika Lara, Justin A. McDonough, Cornelis Blauwendraat, Lirong Peng +90 more

LifeTime and improving European healthcare through cell-based interceptive medicine

Nature(2020)10.1038/s41586-020-2715-9

N/A

0.747DataRank · unranked

144 citations

Geneviève Almouzni, Stanislaw A. Gorski, Stein Aerts, Ido Amit, Michela G. Bertero +178 more

A single-cell atlas enables mapping of homeostatic cellular shifts in the adult human breast

Nature Genetics(2024)10.1038/s41588-024-01688-9

Top 28%

0.708DataRank

Top 28%111 citations

Sara Pensa, Adi Steif, Jack Stenning, Daniel J. Kunz, Linsey J. Porter +13 more

Author response: The Human Cell Atlas

(2017)10.7554/elife.27041.011

Top 29%

0.700DataRank

Top 29%14 citations

Sarah A. Teichmann, Matthew E. Hurles, Ido Amit, Kerstin Lindblad‐Toh, Bernd Bodenmiller +60 more

Yolk sac cell atlas reveals multiorgan functions during human early development

Science(2023)10.1126/science.add7564

N/A

0.692DataRank · unranked

100 citations

Rachel A. Botting, Antony Rose, Simone Webb, Justin Engelbert, Yorick Gitton +56 more

Stabilized mosaic single-cell data integration using unshared features

Nature Biotechnology(2023)10.1038/s41587-023-01766-z

N/A

0.685DataRank · unranked

95 citations

Carolina Guibentif, John C. Marioni, Shila Ghazanfar

Guidelines for reporting single-cell RNA-seq experiments

Nature Biotechnology(2020)10.1038/s41587-020-00744-z

N/A

0.593DataRank · unranked

51 citations

Nancy George, Matthew Green, Parisa Nejad, Bruce J. Aronow, Silvie Korena Fexova +15 more

Highly multiplexed spatially resolved gene expression profiling of mouse organogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.20.391896

N/A

0.510DataRank · unranked

29 citations

Shila Ghazanfar, Alsu Missarova, Noushin Koulena, Nico Pierson, Jonathan A. Griffiths +15 more

Lab-in-the-loop therapeutic antibody design with deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.19.639050

N/A

0.483DataRank · unranked

24 citations

Isidro Hötzel, Samuel D. Stanton, Ryan L. Kelly, Robert G. Alberstein, Emily K. Makowski +68 more

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885v3

N/A

0.449DataRank · unranked

7 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

StabMap: Mosaic single cell data integration using non-overlapping features

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.24.481823

N/A

0.449DataRank · unranked

19 citations

Carolina Guibentif, John C. Marioni, Shila Ghazanfar

A spatiotemporal atlas of mouse gastrulation and early organogenesis to explore axial patterning and project in vitro models onto in vivo space

Cell Reports(2025)10.1016/j.celrep.2025.116047

Top 46%

0.395DataRank

Top 46%8 citations

Tim Lohoff, Noushin Koulena, Nico Pierson, Constantin Pape, Farhan Ameen +11 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v2

N/A

0.330DataRank · unranked

5 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885

N/A

0.228DataRank · unranked

2 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v1

N/A

0.193DataRank · unranked

2 citations

Johannes Köster, Ewa Szcureck, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos +50 more

Publisher Correction: The T-box transcription factor Eomesodermin governs haemogenic competence of yolk sac mesodermal progenitors

Nature Cell Biology(2021)10.1038/s41556-021-00645-6

N/A

0DataRank · unranked

0 citations

Claire Simon, Anna D. Senft, Ita Costello, Lucas Greder, Ivan Imaz-Rosshandler +7 more

A reference induced pluripotent stem cell line for large-scale collaborative studies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.15.472643

N/A

0DataRank · unranked

14 citations

Andrian Yang, Erika Lara, Justin A. McDonough, Cornelis Blauwendraat, Lirong Peng +90 more

geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq

Genome biology(2021)10.1186/s13059-021-02548-z

N/A

0DataRank · unranked

53 citations

Jaison Jain, Andrew Butler, Shila Ghazanfar, Tim Stuart, Maigan A. Brusko +7 more

Coordinated Changes in Gene Expression Kinetics Underlie both Mouse and Human Erythroid Maturation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.21.423773

N/A

0DataRank · unranked

13 citations

Ivan Imaz-Rosshandler, Isabella Inzani, Shila Ghazanfar, Jennifer Nichols, John C. Marioni +3 more

geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.10.455720

N/A

0DataRank · unranked

0 citations

Jaison Jain, Andrew Butler, Shila Ghazanfar, Tim Stuart, Maigan A. Brusko +7 more

Sensitive cluster-free differential expression testing.

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.08.531744

N/A

0DataRank · unranked

17 citations

Leah U. Rosen, Emma Dann, Rahul Satija, John C. Marioni, Alsu Missarova

Milo2.0 unlocks population genetic analyses of cell state abundance using a count-based mixed model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.08.566176

N/A

0DataRank · unranked

9 citations

John C. Marioni, Michael D. Morgan, K V Alice

Leveraging neighborhood representations of single-cell data to achieve sensitive DE testing with miloDE

Genome biology(2024)10.1186/s13059-024-03334-3

N/A

0DataRank · unranked

23 citations

Emma Dann, Leah Rosen, Rahul Satija, John C. Marioni, Alsu Missarova

Diverse Routes toward Early Somites in the Mouse Embryo

Developmental Cell(2020)10.1016/j.devcel.2020.11.013

N/A

0DataRank · unranked

101 citations

Jonathan A. Griffiths, Iván Imaz-Rosshandler, Shila Ghazanfar, Jennifer Nichols, Valerie Wilson +3 more

RNAget: an API to securely retrieve RNA quantifications

Bioinformatics(2023)10.1093/bioinformatics/btad126

N/A

0DataRank · unranked

4 citations

Emilio Palumbo, Jeremy Adams, David Bujold, Guillaume Bourque, Jared L. Nedzel +58 more

John C. Marioni

Indexed papers

Top data-sharing exemplar

Papers