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Leveraging neighborhood representations of single-cell data to achieve sensitive DE testing with miloDE

Genome biology(2024)10.1186/s13059-024-03334-3Source: DataRank Database

Leveraging neighborhood representations of single-cell data to achieve sensitive DE testing with miloDE is a research paper published in Genome biology (2024). On theSindex it has a DataRank of 0. It has been cited 23 times.

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Open Access23 citations

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Enrichment:Funding (11 grants)Impact (FWCI 3.68)OA: goldTopics (33)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (5)

Emma Dann ORCID,Leah Rosen,Rahul Satija ORCID,John C. Marioni ORCID,Alsu Missarova ORCID

Live enrichment

PubMed:39026254 PMC:PMC11256449 OpenAlex:https://openalex.org/W4400788089

National Institute for Occupational Safety and Health

Grant: OT2OD026673

National Institute for Occupational Safety and Health

Grant: OT2OD033760

National Institute for Occupational Safety and Health

Grant: RM1HG011014-02

Chan Zuckerberg Initiative

Grant: EOSS5-0000000381

Chan Zuckerberg Initiative

Grant: HCA-A-1704-01895

Wellcome Trust

Grant: WT206194

European Bioinformatics Institute

Grant: C9545/A29580

NHGRI NIH HHS

Grant: RM1 HG011014

Wellcome Trust

EMBL´s European Bioinformatics Institute (EMBL-EBI)

Wellcome Trust

FWCI

3.68

Citation Percentile

0.9%

Citation Trend

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://genomebiology.biomedcentral.com/counter/pdf/10.1186/s13059-024-03334-3

publisherhttps://genomebiology.biomedcentral.com/counter/pdf/10.1186/s13059-024-03334-3

publisherhttps://link.springer.com/content/pdf/10.1186/s13059-024-03334-3.pdf

publisherhttps://link.springer.com/article/10.1186/s13059-024-03334-3/fulltext.html

journalhttps://doi.org/10.1186/s13059-024-03334-3

Fields of Study

Single-cell and spatial transcriptomicsRenal and related cancersExtracellular vesicles in diseaseSingle-Cell AnalysisAnimalsMiceSoftwareSequence Analysis, RNAIdiopathic Pulmonary FibrosisGene Expression ProfilingHumans

MeSH Terms

AnimalsHumansSoftwareSequence Analysis, RNAGene Expression ProfilingMiceIdiopathic Pulmonary FibrosisSingle-Cell Analysis

Keywords

BiologyComputational biologyCluster analysisSingle-cell analysisSensitivity (control systems)R packageHuman geneticsCluster (spacecraft)Cell typeCellComputer scienceGeneticsMachine learningGene

Sustainable Development Goals

SDG 0: Partnerships for the goals

Leveraging neighborhood representations of single-cell data to achieve sensitive DE testing with miloDE

FAIR Checklist

Authors (5)

Funding (11 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)