Daifeng Wang

Also affiliated with Southern University of Science and Technology

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.6Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An integrative ENCODE resource for cancer genomics

Nature Communications(2020)10.1038/s41467-020-14743-w

Top 5%

4.1DataRank

Top 5%190 citations

Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray +53 more

Papers

Driven by 53 papers — median percentile 56. Top paper: “An integrative ENCODE resource for cancer genomics”.

An integrative ENCODE resource for cancer genomics

Nature Communications(2020)10.1038/s41467-020-14743-w

Top 5%

4.1DataRank

Top 5%190 citations

Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray +53 more

Single-cell genomics and regulatory networks for 388 human brains

Science(2024)10.1126/science.adi5199

Top 12%

1.7DataRank

Top 12%155 citations

Jason Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta +91 more

Multiview learning for understanding functional multiomics

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007677

N/A

0.722DataRank · unranked

122 citations

Daifeng Wang, Nam D. Nguyen

Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex

Genome Medicine(2022)10.1186/s13073-022-01133-8

N/A

0.674DataRank · unranked

15 citations

Hyejung Won, Declan Clarke, Nana Matoba, Saniya Khullar, Yudi Mu +3 more

A deep manifold-regularized learning model for improving phenotype prediction from multi-modal data

Nature Computational Science(2022)10.1038/s43588-021-00185-x

N/A

0.581DataRank · unranked

47 citations

Jiawei Huang, Daifeng Wang, Nam D. Nguyen

ECMarker: interpretable machine learning model identifies gene expression biomarkers predicting clinical outcomes and reveals molecular mechanisms of human disease in early stages

Bioinformatics(2020)10.1093/bioinformatics/btaa935

N/A

0.542DataRank · unranked

36 citations

Nam D. Nguyen, Flaminia Talos, Daifeng Wang, Ting Jin

Altered patterning of trisomy 21 interneuron progenitors

Stem Cell Reports(2022)10.1016/j.stemcr.2022.05.001

N/A

0.524DataRank · unranked

32 citations

Jie Sheng, Bennett Strand, Ke Xu, Leslie Huang, Margaret Medo +14 more

Manifold learning analysis suggests strategies to align single-cell multimodal data of neuronal electrophysiology and transcriptomics

Communications Biology(2021)10.1038/s42003-021-02807-6

N/A

0.434DataRank · unranked

17 citations

Jie Sheng, Daifeng Wang, Jiawei Huang

Single-cell genomics and regulatory networks for 388 human brains

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.18.585576

Top 44%

0.419DataRank

Top 44%9 citations

Jason J. Liu, Declan Clarke, Matthew L. Jensen, Jonathan Warrell, Chirag Gupta +75 more

Population-scale cross-disorder atlas of the human prefrontal cortex at single-cell resolution

Scientific Data(2025)10.1038/s41597-025-04687-5

Top 49%

0.360DataRank

Top 49%10 citations

Prashant Nm, Donghoon Lee, Deepika Mathur, Karen Therrien, Aram Hong +59 more

Network-based drug repurposing for psychiatric disorders using single-cell genomics

Cell Genomics(2025)10.1016/j.xgen.2025.101003

N/A

0.288DataRank · unranked

5 citations

Noah Cohen Kalafut, Declan Clarke, Jerome J. Choi, Kalpana Hanthanan Arachchilage, Saniya Khullar +6 more

Multimodal analyses reveal genes driving electrophysiological maturation of neurons in the primate prefrontal cortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.02.543460

N/A

0.260DataRank · unranked

4 citations

Qiping Dong, Kalpana Hanthanan Arachchilage, Ryan D. Risgaard, Moosa Syed, Jie Sheng +12 more

Predicting gene regulatory networks from multi-omics to link genetic risk variants and neuroimmunology to Alzheimer’s disease phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.21.449165

N/A

0.165DataRank · unranked

2 citations

Daifeng Wang, Saniya Khullar

MANGEM: a web app for Multimodal Analysis of Neuronal Gene expression, Electrophysiology and Morphology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.03.535322

N/A

0.104DataRank · unranked

1 citations

Noah Cohen Kalafut, Daifeng Wang, Robert Hermod Olson

Chemically Induced Senescence in Human Stem Cell-Derived Neurons Promotes Phenotypic Presentation of Neurodegeneration

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.11.451956

N/A

0.104DataRank · unranked

1 citations

Sakthikumar Mathivanan, Linghai Kong, Andrew J. Petersen, Cole R. K. Harder, Jasper Block +5 more

CMOT: Cross Modality Optimal Transport for multimodal inference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.15.512387

N/A

0DataRank · unranked

2 citations

Daifeng Wang, Sayali Alatkar

Single-cell network biology characterizes cell type gene regulation for drug repurposing and phenotype prediction in Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.09.475548

N/A

0DataRank · unranked

0 citations

Jielin Xu, Ting Jin, Saniya Khullar, Xiaoyu Liu, Sayali Alatkar +3 more

Joint variational autoencoders for multimodal imputation and embedding

Nature Machine Intelligence(2023)10.1038/s42256-023-00663-z

N/A

0DataRank · unranked

73 citations

Xiang Huang, Daifeng Wang, Noah Cohen Kalafut

DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype–phenotype prediction

Genome Medicine(2023)10.1186/s13073-023-01248-6

N/A

0DataRank · unranked

39 citations

Sayali Alatkar, Jiebiao Wang, Gabriel E. Hoffman, Chenfeng He, Ting Jin +6 more

Species-specific FMRP regulation of RACK1 is critical for prenatal cortical development

Neuron(2023)10.1016/j.neuron.2023.09.014

N/A

0DataRank · unranked

38 citations

Carissa L. Sirois, Yu Guo, Meng Li, Qiping Dong, Natasha M. Méndez-Albelo +20 more

Elevated levels of FMRP-target MAP1B impair human and mouse neuronal development and mouse social behaviors via autophagy pathway

Nature Communications(2023)10.1038/s41467-023-39337-0

N/A

0DataRank · unranked

37 citations

Minjie Shen, Qiping Dong, Natasha M. Méndez-Albelo, Sabrina X. Huang, Carissa L. Sirois +15 more

CMOT: Cross-Modality Optimal Transport for multimodal inference

Genome biology(2023)10.1186/s13059-023-02989-8

N/A

0DataRank · unranked

23 citations

Daifeng Wang, Sayali Alatkar

BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100409

N/A

0DataRank · unranked

22 citations

Noah Cohen Kalafut, Soraya O. Sandoval, Ryan D. Risgaard, Carissa L. Sirois, Chen Yang +8 more

Predicting brain-regional gene regulatory networks from multi-omics for Alzheimer’s disease phenotypes and Covid-19 severity

Human Molecular Genetics(2023)10.1093/hmg/ddad009

N/A

0DataRank · unranked

12 citations

Daifeng Wang, Saniya Khullar

MANGEM: A web app for multimodal analysis of neuronal gene expression, electrophysiology, and morphology

Patterns(2023)10.1016/j.patter.2023.100847

N/A

0DataRank · unranked

2 citations

Noah Cohen Kalafut, Daifeng Wang, Robert Hermod Olson

Computational approaches to address data challenges in intellectual and developmental disabilities research

Journal of Neurodevelopmental Disorders(2023)10.1186/s11689-022-09472-8

N/A

0DataRank · unranked

1 citations

John R. Pruett, Daifeng Wang

NetREm Network Regression Embeddings reveal cell-type transcription factor coordination for gene regulation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.25.563769

N/A

0DataRank · unranked

1 citations

Xiang Huang, Raghu Ramesh, John Svaren, Daifeng Wang, Saniya Khullar

Rigor and reproducibility in human brain organoid research: Where we are and where we need to go

Stem Cell Reports(2024)10.1016/j.stemcr.2024.04.008

N/A

0DataRank · unranked

63 citations

Gerarda Cappuccio, Karina Kruth, Sivan Osenberg, Saleh M. Khalil, Natasha M. Méndez-Albelo +26 more

NetREm: Network Regression Embeddings reveal cell-type transcription factor coordination for gene regulation

Bioinformatics Advances(2024)10.1093/bioadv/vbae206

N/A

0DataRank · unranked

3 citations

Xiang Huang, Raghu Ramesh, John Svaren, Daifeng Wang, Saniya Khullar

Network-based drug repurposing for psychiatric disorders using single-cell genomics

medRxiv(2024)10.1101/2024.12.01.24318008

N/A

0DataRank · unranked

2 citations

Noah Cohen Kalafut, Declan Clarke, Jerome Choi, Kalpana Hanthanan Arachchilage, Saniya Khullar +5 more

Protocol for comparative gene expression data analysis between brains and organoids using a cloud-based web app

STAR Protocols(2024)10.1016/j.xpro.2024.103375

N/A

0DataRank · unranked

0 citations

Pubudu Kumarage, Soraya O. Sandoval, Xinyu Zhao, Daifeng Wang, Xiang Huang

Multimodal analyses reveal genes driving electrophysiological maturation of neurons in the primate prefrontal cortex

Neuron(2025)10.1016/j.neuron.2025.04.025

N/A

0DataRank · unranked

11 citations

Qiping Dong, Kalpana Hanthanan Arachchilage, Ryan D. Risgaard, Moosa Syed, Jie Sheng +16 more

Single‐nucleus analysis reveals oxidative stress in Down syndrome basal forebrain neurons at birth

Alzheimer s & Dementia(2025)10.1002/alz.70445

N/A

0DataRank · unranked

7 citations

Kalpana Hanthanan Arachchilage, Sara Knaack, Shawn MacGregor, Masoumeh Hosseini, Ryan D. Risgaard +7 more

CoTF-reg reveals cooperative transcription factors in oligodendrocyte gene regulation using single-cell multi-omics

Communications Biology(2025)10.1038/s42003-025-07570-6

N/A

0DataRank · unranked

4 citations

John Svaren, Daifeng Wang, Jerome Choi

ARTEMIS integrates autoencoders and Schrödinger Bridges to predict continuous dynamics of gene expression, cell population, and perturbation from time-series single-cell data

Bioinformatics(2025)10.1093/bioinformatics/btaf218

N/A

0DataRank · unranked

3 citations

Daifeng Wang, Sayali Alatkar

Single-nucleus analysis reveals oxidative stress in Down syndrome basal forebrain neurons at birth

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.05.636750

N/A

0DataRank · unranked

1 citations

Kalpana Hanthanan Arachchilage, Sara Knaack, Shawn MacGregor, Masoumeh Hosseini, Ryan D. Risgaard +7 more

Cooperative multi-view integration with Scalable and Interpretable Model Explainer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.11.632570

N/A

0DataRank · unranked

0 citations

Noah Cohen Kalafut, Tim Gruenloh, Corinne D. Engelman, Tianyuan Lu, Daifeng Wang +1 more

Dynamic landscapes of gene regulatory networks in early mammalian neurogenesis: Insights into brain evolution and disorder risk

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.07.681016

Top 100%

0DataRank

Top 100%0 citations

Ryan D. Risgaard, Jie Sheng, Pubudu Kumarage, Jerome Choi, Sayali Alatkar +5 more

Integration of Nuclear Receptors into a Schwann cell Gene Regulatory Network

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.30.685409

N/A

0DataRank · unranked

0 citations

Saniya Khullar, Alena J. Hanson, Seongsik Won, Camila Lopez‐Anido, Daifeng Wang +2 more

RGS6 Mediates Effects of Voluntary Running on Adult Hippocampal Neurogenesis

Cell Reports(2020)10.1016/j.celrep.2020.107997

N/A

0DataRank · unranked

38 citations

Minjie Shen, Jose Gonzalez, Qiping Dong, Sudharsan Kannan, Johnson T. Hoang +8 more

Varmole: a biologically drop-connect deep neural network model for prioritizing disease risk variants and genes

Bioinformatics(2020)10.1093/bioinformatics/btaa866

N/A

0DataRank · unranked

25 citations

Ting Jin, Daifeng Wang, Nam D. Nguyen

Broad transcriptomic dysregulation across the cerebral cortex in ASD

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.17.423129

N/A

0DataRank · unranked

20 citations

Brie Wamsley, George Chen, Sepideh Parhami, Prashant S. Emani, Nathan Chang +17 more

Altered patterning of trisomy 21 interneuron progenitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.18.951756

N/A

0DataRank · unranked

4 citations

Jie Sheng, Bennett Strand, Ke Xu, Leslie Huang, Margaret Medo +14 more

scGRNom: a computational pipeline of integrative multi-omics analyses for predicting cell-type disease genes and regulatory networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.11.147314

N/A

0DataRank · unranked

2 citations

Peter Rehani, Mufang Ying, Jiawei Huang, Shuang Liu, Panagiotis Roussos +2 more

Manifold learning analysis suggests novel strategies for aligning single-cell multi-modalities and revealing functional genomics for neuronal electrophysiology

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.03.410555

N/A

0DataRank · unranked

0 citations

Jie Sheng, Daifeng Wang, Jiawei Huang

Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder

PLoS Genetics(2021)10.1371/journal.pgen.1009309

N/A

0DataRank · unranked

23 citations

Yuchang Wu, Junha Shin, Ye Zheng, Alireza Fotuhi Siahpirani, Yupei Lin +8 more

Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.07.459322

N/A

0DataRank · unranked

5 citations

Hyejung Won, Declan Clarke, Nana Matoba, Saniya Khullar, Yudi Mu +3 more

deepManReg: a deep manifold-regularized learning model for improving phenotype prediction from multi-modal data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.28.428715

N/A

0DataRank · unranked

1 citations

Jiawei Huang, Daifeng Wang, Nam D. Nguyen

Broad transcriptomic dysregulation occurs across the cerebral cortex in ASD

Nature(2022)10.1038/s41586-022-05377-7

N/A

0DataRank · unranked

294 citations

Jillian R. Haney, Brie Wamsley, Chloe X. Yap, Sepideh Parhami, Prashant S. Emani +21 more

Bringing machine learning to research on intellectual and developmental disabilities: taking inspiration from neurological diseases

Journal of Neurodevelopmental Disorders(2022)10.1186/s11689-022-09438-w

N/A

0DataRank · unranked

59 citations

Pramod Bharadwaj Chandrashekar, Ting Jin, Chenfeng He, Saniya Khullar, Qiang Chang +2 more

Single-cell network biology characterizes cell type gene regulation for drug repurposing and phenotype prediction in Alzheimer’s disease

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010287

N/A

0DataRank · unranked

30 citations

Jielin Xu, Ting Jin, Saniya Khullar, Xiaoyu Liu, Sayali Alatkar +3 more

Sustained correction of hippocampal neurogenic and cognitive deficits after a brief treatment by Nutlin-3 in a mouse model of fragile X syndrome

BMC Medicine(2022)10.1186/s12916-022-02370-9

N/A

0DataRank · unranked

7 citations

Yue Li, Jie Sheng, Lucy Zhao, Yao Fu, Daifeng Wang +2 more

Joint Variational Autoencoders for Multimodal Imputation and Embedding

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.15.512388

N/A

0DataRank · unranked

3 citations

Xiang Huang, Daifeng Wang, Noah Cohen Kalafut

Daifeng Wang

Indexed papers

Top data-sharing exemplar

Papers