She Zhang

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 14 papers. Top paper: “HiDeF: identifying persistent structures in multiscale ‘omics data”.

HiDeF: identifying persistent structures in multiscale ‘omics data

Genome biology(2021)10.1186/s13059-020-02228-4

N/A

0.593DataRank · unranked

51 citations

She Zhang, Christopher Churas, Dexter Pratt, İvet Bahar, Trey Ideker +1 more

Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010181

N/A

0.312DataRank · unranked

7 citations

She Zhang, İvet Bahar, Anne-Ruxandra Carvunis, Omer Acar

Identifying persistent structures in multiscale ‘omics data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.16.151555

N/A

0DataRank · unranked

0 citations

She Zhang, Christopher Churas, Dexter Pratt, İvet Bahar, Trey Ideker +1 more

ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python

Bioinformatics(2021)10.1093/bioinformatics/btab187

N/A

0DataRank · unranked

229 citations

James Krieger, Yan Zhang, Cihan Kaya, Burak Kaynak, Karolina Mikulska‐Ruminska +4 more

ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution

Bioinformatics(2021)10.1093/bioinformatics/btab496

N/A

0DataRank · unranked

29 citations

She Zhang, İvet Bahar, Pemra Doruker, Burak Kaynak

Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis

The Journal of Chemical Physics(2021)10.1063/5.0046710

N/A

0DataRank · unranked

10 citations

She Zhang, Jianhua Xing, İvet Bahar, Yan Zhang

Mechanistic Insights into Passive Membrane Permeability of Drug-Like Molecules from a Weighted Ensemble of Trajectories

ChemRxiv(2021)10.26434/chemrxiv-2021-mmv2k

N/A

0DataRank · unranked

2 citations

Jeffrey P. Thompson, Junchao Xia, Anthony T. Bogetti, Forrest York, Geoffrey Skillman +3 more

WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.05.471280

N/A

0DataRank · unranked

1 citations

She Zhang, Jeremy M. G. Leung, Anthony T. Bogetti, Jeffrey P. Thompson, Alex J. DeGrave +11 more

Elastic Network Modeling of Cellular Networks Unveils Sensor and Effector Genes that Control Information Flow

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.04.446730

N/A

0DataRank · unranked

0 citations

She Zhang, İvet Bahar, Anne-Ruxandra Carvunis, Omer Acar

A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v0.1]

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.04.510803

N/A

0DataRank · unranked

4 citations

Jeremy M. G. Leung, John D. Russo, She Zhang, Jeffrey P. Thompson, Ali Sinan Saglam +10 more

A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]

Living Journal of Computational Molecular Science(2023)10.33011/livecoms.5.1.1655

N/A

0DataRank · unranked

15 citations

Jeremy M. G. Leung, John D. Russo, She Zhang, Jeffrey P. Thompson, Ali Sinan Saglam +17 more

Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2010722117

N/A

0DataRank · unranked

361 citations

She Zhang, Rebecca A. Porritt, Magali Noval Rivas, Lisa Paschold, Edith Willscher +4 more

Genome structural dynamics: insights from Gaussian network analysis of Hi-C data

Briefings in Functional Genomics(2024)10.1093/bfgp/elae014

N/A

0DataRank · unranked

0 citations

She Zhang, İvet Bahar, Anupam Banerjee

An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.21.109272

N/A

0DataRank · unranked

58 citations

She Zhang, Rebecca A. Porritt, Moshe Arditi, İvet Bahar, Mary Hongying Cheng