Matteo Pellegrini

Also affiliated with Institute of Molecular and Cell Biology, Broad Center

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.5Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The IntAct database: efficient access to fine-grained molecular interaction data

Nucleic Acids Research(2021)10.1093/nar/gkab1006

Top 5%

4.3DataRank

Top 5%391 citations

Anjali Shrivastava, Eliot Ragueneau, Birgit H M Meldal, Colin Combe, Elisabet Barrera +24 more

Papers

Driven by 131 papers — median percentile 85. Top paper: “The IntAct database: efficient access to fine-grained molecular interaction data”.

The IntAct database: efficient access to fine-grained molecular interaction data

Nucleic Acids Research(2021)10.1093/nar/gkab1006

Top 5%

4.3DataRank

Top 5%391 citations

Anjali Shrivastava, Eliot Ragueneau, Birgit H M Meldal, Colin Combe, Elisabet Barrera +24 more

Stem cell architecture drives myelodysplastic syndrome progression and predicts response to venetoclax-based therapy

Nature Medicine(2022)10.1038/s41591-022-01696-4

N/A

2.2DataRank · unranked

83 citations

Hui Yang, Feiyang Ma, Guillermo Montalban‐Bravo, Natthakan Thongon, Valentina Marchica +33 more

High-quality genome and methylomes illustrate features underlying evolutionary success of oaks

Nature Communications(2022)10.1038/s41467-022-29584-y

Top 12%

1.8DataRank

Top 12%81 citations

Shawn Cokus, Sorel Fitz‐Gibbon, Aleksey V. Zimin, Daniela Puiu, Jesse A. Garcia +7 more

A rat epigenetic clock recapitulates phenotypic aging and co-localizes with heterochromatin

eLife(2020)10.7554/elife.59201

N/A

1.5DataRank · unranked

58 citations

Ross A. McDevitt, Margarita Meer, Kathy A Perdue, Andrea Di Francesco, Theresa Meade +8 more

Towards a unified open access dataset of molecular interactions

Nature Communications(2020)10.1038/s41467-020-19942-z

Top 15%

1.4DataRank

Top 15%82 citations

Elisabet Barrera, Alan Bridge, Noemí del‐Toro, Gianni Cesareni, Margaret Duesbury +22 more

Fasting-mimicking diet cycles reduce neuroinflammation to attenuate cognitive decline in Alzheimer’s models

Cell Reports(2022)10.1016/j.celrep.2022.111417

N/A

1.4DataRank · unranked

68 citations

Fleur Lobo, Edoardo Parrella, Nicolas C. Rochette, Marco Morselli, Terri‐Leigh Stephen +21 more

Transcriptional drifts associated with environmental changes in endothelial cells

eLife(2023)10.7554/elife.81370

N/A

1.2DataRank · unranked

41 citations

Feiyang Ma, Austin Quach, Anhyo Jeong, Hannah Sunshine, Vanessa M. Freitas +9 more

Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury

Cell(2020)10.1016/j.cell.2020.06.030

N/A

0.806DataRank · unranked

214 citations

Jackie L. McCourt, Feiyang Ma, Shuxun Ren, Shen Li, Tae‐Hyung Kim +23 more

Genome-wide Association Analysis of Proinflammatory Cytokines and Gene–lifestyle Interaction for Invasive Breast Cancer Risk: The WHI dbGaP Study

Cancer Prevention Research(2020)10.1158/1940-6207.capr-20-0256

Top 27%

0.752DataRank

Top 27%17 citations

Peter Scott, Jeanette C. Papp, Eric M. Sobel, Matteo Pellegrini, Herbert Yu +3 more

Pro-inflammatory cytokine polymorphisms and interactions with dietary alcohol and estrogen, risk factors for invasive breast cancer using a post genome-wide analysis for gene–gene and gene–lifestyle interaction

Scientific Reports(2021)10.1038/s41598-020-80197-1

N/A

0.630DataRank · unranked

11 citations

Jeanette C. Papp, Eric M. Sobel, Matteo Pellegrini, Herbert Yu, Zuo‐Feng Zhang +1 more

The evolution of computational research in a data-centric world

Cell(2024)10.1016/j.cell.2024.07.045

N/A

0.563DataRank · unranked

15 citations

Karishma Chhugani, Tejasvene Ramesh, Matteo Pellegrini, Sagiv Shifman, Malak S. Abedalthagafi +18 more

Genetic architecture of heart mitochondrial proteome influencing cardiac hypertrophy

eLife(2023)10.7554/elife.82619

N/A

0.517DataRank · unranked

16 citations

Elie-Julien El Hachem, Mark P. Keller, Sanjeet Patel, Luke Carroll, Alexis Díaz‐Vegas +17 more

The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.16.153817

N/A

0.391DataRank · unranked

7 citations

Chiara Pastrello, Noemí del‐Toro, Margaret Duesbury, Marta Iannuccelli, Max Kotlyar +15 more

Single-stranded pre-methylated 5mC adapters uncover the methylation profile of plasma ultrashort Single-stranded cell-free DNA

Nucleic Acids Research(2024)10.1093/nar/gkae276

N/A

0.374DataRank · unranked

7 citations

Neeti Swarup, Marco Morselli, Wei-Lun Huang, Mohammad Aziz, Christa Caggiano +12 more

Multi-omics signature of healthy versus unhealthy lifestyles reveals associations with diseases

Human Genomics(2025)10.1186/s40246-025-00817-7

Top 58%

0.269DataRank

Top 58%5 citations

Blake R. Rushing, Lee M. Graves, David C. Nieman, Matteo Pellegrini, Matthew Soldano +5 more

The Epigenetic Pacemaker: modeling epigenetic states under an evolutionary framework

Bioinformatics(2020)10.1093/bioinformatics/btaa585

N/A

0DataRank · unranked

33 citations

Sagi Snir, Matteo Pellegrini, Colin Farrell

Cardiac fibroblast proliferation rates and collagen expression mature early and are unaltered with advancing age

JCI Insight(2020)10.1172/jci.insight.140628

N/A

0DataRank · unranked

26 citations

Feiyang Ma, Anela Tosevska, Colin Farrell, Matteo Pellegrini, Arjun Deb +1 more

EMP2 Is a Novel Regulator of Stemness in Breast Cancer Cells

Molecular Cancer Therapeutics(2020)10.1158/1535-7163.mct-19-0850

N/A

0DataRank · unranked

23 citations

Meagan Kiyohara, Vei Mah, Sean McDermott, Dana Bazzoun, Jessica Tsui +19 more

Pan-primate DNA methylation clocks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.29.402891

N/A

0DataRank · unranked

14 citations

Amin Haghani, Joseph A. Zoller, Ake T. Lu, Jason Ernst, Matteo Pellegrini +14 more

Single Cell and Spatial Transcriptomics Defines the Cellular Architecture of the Antimicrobial Response Network in Human Leprosy Granulomas

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.01.406819

N/A

0DataRank · unranked

8 citations

Travis K. Hughes, Rosane M. B. Teles, Priscila R. Andrade, Bruno Jorge de Andrade Silva, Olesya Plazyo +14 more

How prior pair-bonding experience affects future bonding behavior in monogamous prairie voles

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.05.135160

N/A

0DataRank · unranked

2 citations

Matteo Pellegrini, Katelyn M. Gordon, Zoe R. Donaldson, Kelsey J. Harbert

Single cell transcriptomic analyses reveal the impact of bHLH factors ATOH7 and Neurog2 on human retinal organoid development

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.27.358135

N/A

0DataRank · unranked

0 citations

Igor Mandric, Kevin Nguyen, Thao T. T. Nguyen, Matteo Pellegrini, James C. R. Grove +3 more

Genetically predicted C-reactive protein associated with breast cancer risk: interrelation with estrogen and cancer molecular subtypes using a Mendelian randomization

Research Square(2020)10.21203/rs.3.rs-57683/v1

N/A

0DataRank · unranked

0 citations

Jeanette C. Papp, Eric M. Sobel, Matteo Pellegrini, Herbert Yu, Zuo‐Feng Zhang +1 more

Targeting monoamine oxidase A-regulated tumor-associated macrophage polarization for cancer immunotherapy

Nature Communications(2021)10.1038/s41467-021-23164-2

N/A

0DataRank · unranked

157 citations

Xi Wang, Jiaji Yu, Feiyang Ma, Zhe Li, Yang Zhou +11 more

Inhibition of microbiota-dependent TMAO production attenuates chronic kidney disease in mice

Scientific Reports(2021)10.1038/s41598-020-80063-0

N/A

0DataRank · unranked

149 citations

Aika Miikeda, Jonathan E. Zuckerman, Xun Jia, Sarada Charugundla, Zhiqiang Zhou +10 more

Development of allogeneic HSC-engineered iNKT cells for off-the-shelf cancer immunotherapy

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100449

N/A

0DataRank · unranked

104 citations

Yang Zhou, Kwang Gi Kim, Yanni Zhu, Feiyang Ma, Jiaji Yu +24 more

BiSulfite Bolt: A bisulfite sequencing analysis platform

GigaScience(2021)10.1093/gigascience/giab033

N/A

0DataRank · unranked

100 citations

Michael J. Thompson, Anela Tosevska, Adewale Oyetunde, Matteo Pellegrini, Colin Farrell

Targeting monoamine oxidase A for T cell–based cancer immunotherapy

Science Immunology(2021)10.1126/sciimmunol.abh2383

N/A

0DataRank · unranked

76 citations

Bo Li, Kwang Gi Kim, Yu-Chen Wang, Zhe Li, Jiaji Yu +16 more

GLUT1 overexpression enhances glucose metabolism and promotes neonatal heart regeneration

Scientific Reports(2021)10.1038/s41598-021-88159-x

N/A

0DataRank · unranked

62 citations

Iris Feng, Bao Ying Chen, Cesar A. Perez-Ramirez, Baochen Shi, Peter M. Clark +7 more

Cardiomyocytes disrupt pyrimidine biosynthesis in nonmyocytes to regulate heart repair

Journal of Clinical Investigation(2021)10.1172/jci149711

N/A

0DataRank · unranked

43 citations

Tomohiro Yokota, Ping Wang, Johanna ten Hoeve, Feiyang Ma, Thuc Le +27 more

Hematopoiesis under telomere attrition at the single-cell resolution

Nature Communications(2021)10.1038/s41467-021-27206-7

N/A

0DataRank · unranked

36 citations

Feiyang Ma, Andrea Santoni, Matteo Marchesini, Elena Fiorini, Ashley Rose +20 more

Early adaptive chromatin remodeling events precede pathologic phenotypes and are reinforced in the failing heart

Journal of Molecular and Cellular Cardiology(2021)10.1016/j.yjmcc.2021.07.002

N/A

0DataRank · unranked

34 citations

Maximilian Cabaj, Marco Morselli, Rosibel J. Mason, Elizabeth Soehalim, Shuxun Ren +5 more

The induction of preterm labor in rhesus macaques is determined by the strength of immune response to intrauterine infection

PLoS Biology(2021)10.1371/journal.pbio.3001385

N/A

0DataRank · unranked

30 citations

Pietro Presicce, Feiyang Ma, Paranthaman Senthamaraikannan, Lisa A. Miller, Matteo Pellegrini +7 more

Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples

Briefings in Bioinformatics(2021)10.1093/bib/bbab265

N/A

0DataRank · unranked

27 citations

Meritxell Oliva, Benjamin L. Shou, Keith Mitchell, Feiyang Ma, Dennis Montoya +6 more

Genetically Predicted C-Reactive Protein Associated With Postmenopausal Breast Cancer Risk: Interrelation With Estrogen and Cancer Molecular Subtypes Using Mendelian Randomization

Frontiers in Oncology(2021)10.3389/fonc.2020.630994

N/A

0DataRank · unranked

22 citations

Jeanette C. Papp, Eric M. Sobel, Matteo Pellegrini, Herbert Yu, Zuo‐Feng Zhang +1 more

Combining ReACp53 with Carboplatin to Target High-Grade Serous Ovarian Cancers

Cancers(2021)10.3390/cancers13235908

N/A

0DataRank · unranked

18 citations

Tiffany Lai, Tanya Singh, Neela Rahseparian, Tristan Grogan, David Elashoff +4 more

IRAK2 Has a Critical Role in Promoting Feed-Forward Amplification of Epidermal Inflammatory Responses

Journal of Investigative Dermatology(2021)10.1016/j.jid.2021.03.019

N/A

0DataRank · unranked

17 citations

Lam C. Tsoi, William R. Swindell, Jiaoling Chen, Ranjitha Uppala, Allison C. Billi +23 more

Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion

Plant and Soil(2021)10.1007/s11104-021-05247-7

N/A

0DataRank · unranked

16 citations

Ethan Humm, David W. Still, Baochen Shi, Matteo Pellegrini, Gabriela de la Roca +16 more

Single Cell Transcriptomic Analyses Reveal the Impact of bHLH Factors on Human Retinal Organoid Development

Frontiers in Cell and Developmental Biology(2021)10.3389/fcell.2021.653305

N/A

0DataRank · unranked

12 citations

Igor Mandric, Kevin Nguyen, Thao T. T. Nguyen, Matteo Pellegrini, James C. R. Grove +3 more

NOTUM promotes thermogenic capacity and protects against diet-induced obesity in male mice

Scientific Reports(2021)10.1038/s41598-021-95720-1

N/A

0DataRank · unranked

9 citations

Marcus Seldin, Miklós Péterfy, Sarada Charugundla, Zhiqiang Zhou, Stephen D. Lee +8 more

Identification of Genes Encoding Antimicrobial Proteins in Langerhans Cells

Frontiers in Immunology(2021)10.3389/fimmu.2021.695373

N/A

0DataRank · unranked

5 citations

Feiyang Ma, Rosane M. B. Teles, Bruno Jorge de Andrade Silva, Matteo Pellegrini, Eynav Klechevsky +4 more

Species-Specific Relationships between DNA and Chromatin Properties of CpG Islands in Embryonic Stem Cells and Differentiated Cells

Stem Cell Reports(2021)10.1016/j.stemcr.2021.02.016

N/A

0DataRank · unranked

8 citations

David López, Matteo Pellegrini, Stephen T. Smale, Justin Langerman

Molecular Biology Networks and Key Gene Regulators for Inflammatory Biomarkers Shared by Breast Cancer Development: Multi-Omics Systems Analysis

Biomolecules(2021)10.3390/biom11091379

N/A

0DataRank · unranked

3 citations

Jeanette C. Papp, Matteo Pellegrini, Herbert Yu, Eric M. Sobel, Su Yon Jung

Synergistic Effects of Genetic Variants of Glucose Homeostasis and Lifelong Exposures to Cigarette Smoking, Female Hormones, and Dietary Fat Intake on Primary Colorectal Cancer Development in African and Hispanic/Latino American Women

Frontiers in Oncology(2021)10.3389/fonc.2021.760243

N/A

0DataRank · unranked

1 citations

Eric M. Sobel, Matteo Pellegrini, Herbert Yu, Jeanette C. Papp, Su Yon Jung

A mammalian methylation array for profiling methylation levels at conserved sequences

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.07.425637

N/A

0DataRank · unranked

80 citations

Amin Haghani, Michael J. Thompson, Matteo Pellegrini, Soo Bin Kwon, Ha Vu +10 more

Plasma Contains Ultra-short Single-stranded DNA in Addition to Nucleosomal cfDNA

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.22.457243

N/A

0DataRank · unranked

2 citations

Marco Morselli, Wei-Lun Huang, You Jeong Heo, Thalyta Pinheiro-Ferreira, Feng Li +8 more

Genome wide profiling of histone H3 lysine 4 methylation during the Chlamydomonas cell cycle reveals stable and dynamic properties of lysine 4 trimethylation at gene promoters and near ubiquitous lysine 4 monomethylation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.19.460975

N/A

0DataRank · unranked

2 citations

Asli Yildirim, Juying Yan, Yuko Yoshinaga, Matteo Pellegrini, Ronan C. O’Malley +3 more

A mammalian methylation array for profiling methylation levels at conserved sequences

Nature Communications(2022)10.1038/s41467-022-28355-z

N/A

0DataRank · unranked

218 citations

Amin Haghani, Michael J. Thompson, Matteo Pellegrini, Soo Bin Kwon, Ha Vu +13 more

TREM2 macrophages induced by human lipids drive inflammation in acne lesions

Science Immunology(2022)10.1126/sciimmunol.abo2787

N/A

0DataRank · unranked

154 citations

Feiyang Ma, Priscila R. Andrade, Rosane M. B. Teles, Bruno Jorge de Andrade Silva, Chanyue Hu +21 more

Nonlesional lupus skin contributes to inflammatory education of myeloid cells and primes for cutaneous inflammation

Science Translational Medicine(2022)10.1126/scitranslmed.abn2263

N/A

0DataRank · unranked

153 citations

Feiyang Ma, Olesya Plazyo, Mehrnaz Gharaee‐Kermani, Rachael Wasikowski, Grace A. Hile +12 more

Aortic intimal resident macrophages are essential for maintenance of the non-thrombogenic intravascular state

Nature Cardiovascular Research(2022)10.1038/s44161-021-00006-4

N/A

0DataRank · unranked

59 citations

Feiyang Ma, Guadalupe Martínez, Nadia B. Firozabadi, Jocelynda Salvador, Lih Jiin Juang +10 more

Plasma contains ultrashort single-stranded DNA in addition to nucleosomal cell-free DNA

iScience(2022)10.1016/j.isci.2022.104554

N/A

0DataRank · unranked

50 citations

Marco Morselli, Wei-Lun Huang, You Jeong Heo, Thalyta Pinheiro-Ferreira, Feng Li +9 more

Canonical Wnt signaling induces focal adhesion and Integrin beta-1 endocytosis

iScience(2022)10.1016/j.isci.2022.104123

N/A

0DataRank · unranked

32 citations

Marco Morselli, Yuki Moriyama, Pooja Sheladiya, Matteo Pellegrini, Edward M. De Robertis +1 more

Integrated analysis of an in vivo model of intra-nasal exposure to instilled air pollutants reveals cell-type specific responses in the placenta

Scientific Reports(2022)10.1038/s41598-022-12340-z

N/A

0DataRank · unranked

27 citations

Shubhamoy Ghosh, Amit Ganguly, Monica Cappelletti, Suhas G. Kallapur, Matteo Pellegrini +2 more

DNA methylation profiles in pneumonia patients reflect changes in cell types and pneumonia severity

Epigenetics(2022)10.1080/15592294.2022.2051862

N/A

0DataRank · unranked

20 citations

Colin Farrell, Dennis Montoya, Tarık Gören, Ramazan Sabırlı, İbrahim Türkçüer +4 more

The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle

The Plant Journal(2022)10.1111/tpj.15948

N/A

0DataRank · unranked

19 citations

Asli Yildirim, Juying Yan, Yuko Yoshinaga, Matteo Pellegrini, Ronan C. O’Malley +3 more

DNA Methylation-Based Prediction of Post-operative Atrial Fibrillation

Frontiers in Cardiovascular Medicine(2022)10.3389/fcvm.2022.837725

N/A

0DataRank · unranked

16 citations

Aman Mahajan, Maximilian Cabaj, Todd Kimball, Marco Morselli, Elizabeth Soehalim +12 more

Heterogeneous pdgfrb+ cells regulate coronary vessel development and revascularization during heart regeneration

Development(2022)10.1242/dev.199752

N/A

0DataRank · unranked

14 citations

Haipeng Bai, Juancarlos Fierros, Ying Huang, Feiyang Ma, Tyler Yoshida +13 more

Longitudinal profiling in patients undergoing cardiac surgery reveals postoperative changes in DNA methylation

Clinical Epigenetics(2022)10.1186/s13148-022-01414-4

N/A

0DataRank · unranked

10 citations

Douglas J. Chapski, Elizabeth Soehalim, Dennis Montoya, Tristan Grogan, Matteo Pellegrini +4 more

Single-Cell RNA-Seq Identifies Dynamic Cardiac Transition Program from ADCs Induced by Leukemia Inhibitory Factor

Stem Cells(2022)10.1093/stmcls/sxac048

N/A

0DataRank · unranked

2 citations

Feiyang Ma, Li Zhang, Ching Zhu, Medet Jumabay, Zehao Yao +10 more

Sex differences in NK cells mediated by the X-linked epigenetic regulator UTX

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.21.489076

N/A

0DataRank · unranked

5 citations

Luke Riggan, Joey H. Li, Rana Yakhshi Tafti, Scott Chin, Feiyang Ma +6 more

Canonical Wnt Signaling Induces Focal Adhesion and Integrin Beta-1 Endocytosis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.11.475934

N/A

0DataRank · unranked

1 citations

Marco Morselli, Yuki Moriyama, Pooja Sheladiya, Matteo Pellegrini, Edward M. De Robertis +1 more

Genetic Architecture of Heart Mitochondrial Proteome influencing Cardiac Hypertrophy

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.24.505177

N/A

0DataRank · unranked

1 citations

Elie-Julien El Hachem, Luke Carroll, Alexis Díaz‐Vegas, Christine Light, Yang Cao +11 more

Comparative transcriptomics reveal highly conserved regional programs between porcine and human colonic enteric nervous system

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.24.480770

N/A

0DataRank · unranked

0 citations

Marco Morselli, Trent Su, Mulugeta Million, Muriel Larauche, Matteo Pellegrini +3 more

Comparative Transcriptomics Reveal Highly Conserved Regional Programs Between Porcine and Human Colonic Enteric Nervous System

Research Square(2022)10.21203/rs.3.rs-1420185/v1

N/A

0DataRank · unranked

0 citations

Marco Morselli, Trent Su, Mulugeta Million, Muriel Larauche, Matteo Pellegrini +3 more

Longitudinal analysis of influenza vaccination implicates regulation of RIG-I signaling by DNA methylation

Research Square(2022)10.21203/rs.3.rs-2241935/v1

N/A

0DataRank · unranked

0 citations

Harry Pickering, Liudmilla Rubbi, Ted M. Ross, Elaine F. Reed, Matteo Pellegrini +1 more

CD5 expression by dendritic cells directs T cell immunity and sustains immunotherapy responses

Science(2023)10.1126/science.abg2752

N/A

0DataRank · unranked

117 citations

Kate Roussak, Feiyang Ma, Nicholas Borcherding, Vince Garin, J. Michael White +26 more

The X-linked epigenetic regulator UTX controls NK cell-intrinsic sex differences

Nature Immunology(2023)10.1038/s41590-023-01463-8

N/A

0DataRank · unranked

115 citations

Joey H. Li, Luke Riggan, Bryan Chen, Rana Yakhshi Tafti, Scott Chin +7 more

Fibroblasts in heart scar tissue directly regulate cardiac excitability and arrhythmogenesis

Science(2023)10.1126/science.adh9925

N/A

0DataRank · unranked

88 citations

Qihao Li, Bo Tao, Marina Angelini, Sivakumar Ramadoss, Baiming Sun +13 more

Single-cell sequencing reveals Hippo signaling as a driver of fibrosis in hidradenitis suppurativa

Journal of Clinical Investigation(2023)10.1172/jci169225

N/A

0DataRank · unranked

57 citations

Feiyang Ma, Pei‐Suen Tsou, Olesya Plazyo, Mehrnaz Gharaee‐Kermani, Marta Calbet +25 more

Unlocking the potential of allogeneic Vδ2 T cells for ovarian cancer therapy through CD16 biomarker selection and CAR/IL-15 engineering

Nature Communications(2023)10.1038/s41467-023-42619-2

N/A

0DataRank · unranked

46 citations

Zachary Spencer Dunn, Wenbin Guo, Carl J. Rosenthal, Natalie E. Penn, Yanqi Yu +12 more

Single-cell RNA sequencing identifies a population of human liver-type ILC1s

Cell Reports(2023)10.1016/j.celrep.2022.111937

N/A

0DataRank · unranked

37 citations

Ansel P. Nalin, Feiyang Ma, Sarah Eickhoff, Philipp Lutz, Sonia Leonardelli +40 more

Conserved multi-tissue transcriptomic adaptations to exercise training in humans and mice

Cell Reports(2023)10.1016/j.celrep.2023.112499

N/A

0DataRank · unranked

25 citations

Sindre Lee-Ødegård, Thomas Olsén, Marco Morselli, Alexander R. Strumwasser, Amanda Lin +35 more

Pan-primate studies of age and sex

GeroScience(2023)10.1007/s11357-023-00878-3

N/A

0DataRank · unranked

24 citations

Amin Haghani, Joseph A. Zoller, Ake T. Lu, Jason Ernst, Matteo Pellegrini +14 more

Innate and adaptive AAV-mediated immune responses in a mouse model of Duchenne muscular dystrophy

Molecular Therapy — Methods & Clinical Development(2023)10.1016/j.omtm.2023.06.002

N/A

0DataRank · unranked

21 citations

Alejandro Espinoza, Courtney S. Young, Feiyang Ma, Philip K. Farahat, Philip L. Felgner +7 more

Distinct Features of Plasma Ultrashort Single-Stranded Cell-Free DNA as Biomarkers for Lung Cancer Detection

Clinical Chemistry(2023)10.1093/clinchem/hvad131

N/A

0DataRank · unranked

11 citations

Neeti Swarup, Feng Li, Misagh Kordi, Chien‐Chung Lin, Szu‐Chun Yang +12 more

A ketogenic diet can mitigate SARS-CoV-2 induced systemic reprogramming and inflammation

Communications Biology(2023)10.1038/s42003-023-05478-7

N/A

0DataRank · unranked

8 citations

Shen Li, Johanna ten Hoeve, Akshay Chellappa, Alexandra Morris, Barbara Jane Dillon +14 more

DNA methylation in peripheral blood leukocytes for the association with glucose metabolism and invasive breast cancer

Clinical Epigenetics(2023)10.1186/s13148-023-01435-7

N/A

0DataRank · unranked

7 citations

Parveen Bhatti, Matteo Pellegrini, Su Yon Jung

Amnion responses to intrauterine inflammation and effects of inhibition of TNF signaling in preterm Rhesus macaque

iScience(2023)10.1016/j.isci.2023.108118

N/A

0DataRank · unranked

6 citations

Monica Cappelletti, Marco Morselli, Feiyang Ma, Paranthaman Senthamaraikannan, Giulia Protti +12 more

Comparative transcriptomics reveals highly conserved regional programs between porcine and human colonic enteric nervous system

Communications Biology(2023)10.1038/s42003-023-04478-x

N/A

0DataRank · unranked

9 citations

Marco Morselli, Trent Su, Mulugeta Million, Muriel Larauche, Matteo Pellegrini +3 more

Age-associated DNA methylation changes in Xenopus frogs

Epigenetics(2023)10.1080/15592294.2023.2201517

N/A

0DataRank · unranked

8 citations

Ronan Bennett, Nikko‐Ideen Shaidani, Marko E. Horb, Leonid Peshkin, Matteo Pellegrini +1 more

Genetic variants of glucose metabolism and exposure to smoking in African American breast cancer

Endocrine Related Cancer(2023)10.1530/erc-22-0184

N/A

0DataRank · unranked

3 citations

Jeanette C. Papp, Eric M. Sobel, Matteo Pellegrini, Herbert Yu, Su Yon Jung

Rtf1-dependent transcriptional pausing regulates cardiogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.13.562296

N/A

0DataRank · unranked

3 citations

Fei Lü, Luna Tsang, Zi Yi Stephanie Huang, Benjamin Keer, Zhiyu Tian +6 more

Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis

Nature Communications(2024)10.1038/s41467-023-44645-6

N/A

0DataRank · unranked

77 citations

Pei‐Suen Tsou, Mehrnaz Gharaee‐Kermani, Olesya Plazyo, Xianying Xing, Joseph Kirma +20 more

Bone-marrow macrophage-derived GPNMB protein binds to orphan receptor GPR39 and plays a critical role in cardiac repair

Nature Cardiovascular Research(2024)10.1038/s44161-024-00555-4

N/A

0DataRank · unranked

24 citations

Juan Qin, Bo Tao, Nathan E. Thomas, Edward Cao, Rimao Wu +14 more

D-2-HG Inhibits IDH1mut Glioma Growth via FTO Inhibition and Resultant m6A Hypermethylation

Cancer Research Communications(2024)10.1158/2767-9764.crc-23-0271

N/A

0DataRank · unranked

17 citations

Tie Li, Terry J. Prins, Blaine S.C. Eldred, Bryan M. Kevan, Haowen Liang +9 more

Longitudinal analysis of influenza vaccination implicates regulation of RIG-I signaling by DNA methylation

Scientific Reports(2024)10.1038/s41598-024-51665-9

N/A

0DataRank · unranked

15 citations

Harry Pickering, Liudmilla Rubbi, Ted M. Ross, Elaine F. Reed, Matteo Pellegrini +1 more

Single cell and TCR analysis of immune cells from AAV gene therapy-dosed Duchenne muscular dystrophy patients

Molecular Therapy — Methods & Clinical Development(2024)10.1016/j.omtm.2024.101349

N/A

0DataRank · unranked

10 citations

Mark A. Brimble, Alejandro Espinoza, Jane Owens, Laurence O. Whiteley, Sandra Casinghino +10 more

A humanized monoclonal antibody targeting an ectonucleotidase rescues cardiac metabolism and heart function after myocardial infarction

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101795

N/A

0DataRank · unranked

9 citations

Bo Tao, Jun Wan, Encarnacion Montecino‐Rodriguez, Ping Wang, Feiyang Ma +19 more

The response to influenza vaccination is associated with DNA methylation-driven regulation of T cell innate antiviral pathways

Clinical Epigenetics(2024)10.1186/s13148-024-01730-x

N/A

0DataRank · unranked

7 citations

Harry Pickering, Liudmilla Rubbi, Ted M. Ross, Wanding Zhou, Elaine F. Reed +2 more

DNA-methylation age and accelerated epigenetic aging in blood as a tumor marker for predicting breast cancer susceptibility

Aging(2024)10.18632/aging.206169

N/A

0DataRank · unranked

5 citations

Herbert Yu, Youping Deng, Matteo Pellegrini, Su Yon Jung

An epigenetic human cytomegalovirus infection score predicts viremia risk in seropositive lung transplant recipients

Epigenetics(2024)10.1080/15592294.2024.2408843

N/A

0DataRank · unranked

3 citations

Rashmi P. Mohanty, Liudmilla Rubbi, Michael J. Thompson, Harry Pickering, Elaine F. Reed +4 more

Protocol for isolating amnion cells from human and non-human primate placenta for flow cytometry and transcriptomics

STAR Protocols(2024)10.1016/j.xpro.2024.103044

N/A

0DataRank · unranked

1 citations

Daniel Short, Marco Morselli, Matteo Pellegrini, Mark R. Johnson, Yalda Afshar +3 more

Rtf1-dependent transcriptional pausing regulates cardiogenesis

eLife(2024)10.7554/elife.94524

N/A

0DataRank · unranked

1 citations

Fei Lü, Luna Tsang, Zi Yi Stephanie Huang, Benjamin Keer, Zhiyu Tian +6 more

Rtf1-dependent transcriptional pausing regulates cardiogenesis

eLife(2024)10.7554/elife.94524.1

N/A

0DataRank · unranked

0 citations

Fei Lü, Luna Tsang, Zi Yi Stephanie Huang, Benjamin Keer, Zhiyu Tian +6 more

Reviewer #1 (Public Review): Rtf1-dependent transcriptional pausing regulates cardiogenesis

(2024)10.7554/elife.94524.1.sa1

N/A

0DataRank · unranked

0 citations

Fei Lü, Luna Tsang, Zi Yi Stephanie Huang, Benjamin Keer, Zhiyu Tian +6 more

Co-analysis of methylation platforms for signatures of biological aging in the domestic dog reveals previously unexplored confounding factors

Aging(2024)10.18632/aging.206012

N/A

0DataRank · unranked

0 citations

Reuben M. Buckley, Lajoyce Mboning, Gabriella J. Spatola, Steve Horvath, Matteo Pellegrini +2 more

An epigenetic clock for Xenopus tropicalis reveals age-associated sites enriched in H4K20me3-marked heterochromatin

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.21.629929

N/A

0DataRank · unranked

0 citations

Marco Morselli, Leonid Peshkin, Matteo Pellegrini, Ronan Bennett

Serotonin transporter inhibits antitumor immunity through regulating the intratumoral serotonin axis

Cell(2025)10.1016/j.cell.2025.04.032

N/A

0DataRank · unranked

60 citations

James Elsten-Brown, Miao Li, Enbo Zhu, Zhe Li, Yuning Chen +14 more

Macrophage-derived Spp1 promotes intramuscular fat in dystrophic muscle

JCI Insight(2025)10.1172/jci.insight.181946

N/A

0DataRank · unranked

12 citations

Chino Kumagai-Cresse, Raquel Aragón, Feiyang Ma, Justin K Amakor, Alejandro Espinoza +15 more

Muscle metabolic resilience and enhanced exercise adaptation by Esr1-induced remodeling of mitochondrial cristae-nucleoid architecture in males

Cell Reports Medicine(2025)10.1016/j.xcrm.2025.102116

N/A

0DataRank · unranked

7 citations

Timothy M. Moore, Alexander R. Strumwasser, Vicent Ribas, Hirotaka Iwasaki, Noelle Morrow +31 more

Dynamics of Th1/Th17 responses and antimicrobial pathways in leprosy skin lesions

Journal of Clinical Investigation(2025)10.1172/jci190736

N/A

0DataRank · unranked

6 citations

Feiyang Ma, Jing Lü, Jaime de Anda, Ernest Y. Lee, George W. Agak +13 more

Mitochondrial reactive oxygen species regulate acetyl-CoA flux between cytokine production and fatty acid synthesis in effector T cells

Cell Reports(2025)10.1016/j.celrep.2025.115430

N/A

0DataRank · unranked

4 citations

Jin Seok Woo, Spyridon Hasiakos, Calvin Pan, Shawn Cokus, Cristiane Benincá +8 more

Epigenetic age and accelerated aging phenotypes: a tumor biomarker for predicting colorectal cancer

Aging(2025)10.18632/aging.206276

N/A

0DataRank · unranked

1 citations

Matteo Pellegrini, Xianglong Tan, Herbert Yu, Su Yon Jung

Frailty in lung transplant recipients is associated with anemia and telomere dysfunction but independent of epigenetic age

American Journal of Transplantation(2025)10.1016/j.ajt.2025.05.002

N/A

0DataRank · unranked

3 citations

Rashmi P. Mohanty, Michael Wax, Ying Gao, Lily Tran, Paul J. Wolters +4 more

Granulysin-high decidual NK cells in macaques and humans share signatures of immune defense

Cell Reports(2025)10.1016/j.celrep.2025.115943

N/A

0DataRank · unranked

2 citations

Giulia Protti, Monica Cappelletti, Feiyang Ma, Neema Pithia, Angel Dasenbrock +7 more

Functional Dynamics of Dendritic Cells in Response to Cutibacterium acnes Strains Associated with Healthy and Acne-Prone Skin

Journal of Investigative Dermatology(2025)10.1016/j.jid.2025.02.132

N/A

0DataRank · unranked

1 citations

Nam Phuong N. Nguyen, Kelsey Ouyang, Collins Odhiambo, Amanda M. Nelson, Min Deng +3 more

An epigenetic clock for Xenopus tropicalis

npj Aging(2025)10.1038/s41514-025-00236-x

N/A

0DataRank · unranked

1 citations

Marco Morselli, Kseniya Petrova, Leonid Peshkin, Matteo Pellegrini, Ronan Bennett

Pharmacological targeting of the IL-17/neutrophil axis attenuates calcific deposits in rat models of calciphylaxis

Journal of Clinical Investigation(2025)10.1172/jci190369

N/A

0DataRank · unranked

1 citations

Edward Cao, James Hyun, Sivakumar Ramadoss, Juan F. Alvarez, L. Joseph Su +10 more

Novel Taxol-Derivative, STO-1, Induces Selective Anti-Tumor Immunity and Sustained Remission of Glioblastoma Without Triggering Autoimmune Reactions

Preprints.org(2025)10.20944/preprints202509.1719.v1

N/A

0DataRank · unranked

1 citations

Adrian Guerrero, Neha Rahman, Kamrul Zaman, Jun Wu, Callistus Onyeagba +8 more

Biological Aging in Combination with Lifestyle Factors in the Blood-Based Methylome: A Biomarker for Colorectal Cancer Susceptibility in African American Women

Aging and Disease(2025)10.14336/ad.2025.0099

N/A

0DataRank · unranked

0 citations

Matteo Pellegrini, Herbert Yu, Su Yon Jung

MicroBayesAge: a maximum likelihood approach to predict epigenetic age using microarray data

GeroScience(2025)10.1007/s11357-025-01716-4

N/A

0DataRank · unranked

0 citations

Megan Mitchell, Lajoyce Mboning, Louis‐S. Bouchard, Matteo Pellegrini, Nicole Nolan

TREM2 + macrophages accumulate in alveoli of human pulmonary tuberculosis providing a permissive niche for bacterial growth

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.15.664002

N/A

0DataRank · unranked

0 citations

Chaouki Benabdessalem, Jonathan Perrie, Cenfu Wei, Julie West, Bruno Jorge de Andrade Silva +26 more

Robust software development practices improve citations of RNA-seq tools

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.05.674580

N/A

0DataRank · unranked

0 citations

Ecem Ilgun, Tuna Okcu, Vladyslav Ostash, V. V. Bashynska, Can Alkan +17 more

Differentially Expressed Salivary miRNAs in Temporomandibular Disorders

Orthodontics and Craniofacial Research(2025)10.1111/ocr.70038

N/A

0DataRank · unranked

0 citations

Mohammad Aziz, Holly Wilhalme, Sharon Aronovich, Elizabeth Hatfield, Tara Aghaloo +9 more

Dysregulated DNA Methylation in Abca4-/- Retinal Pigment Epithelium: Insights into Early Stage of Stargardt Disease

International Journal of Molecular Sciences(2025)10.3390/ijms262110742

N/A

0DataRank · unranked

0 citations

Anela Tosevska, Marco Morselli, Emily Tom, Matteo Pellegrini, Dorota Skowronska‐Krawczyk +2 more

Single-cell RNA sequencing reveals key molecular drivers of keloid persistence in skin of color 2406

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.329

N/A

0DataRank · unranked

0 citations

Keshvad Hedayatyanfard, Alexander R. Kheshvadjian, Sarwat Jahan, Gregory J. Brewer, Mojan Deriss +5 more

Challenges and Recommendations in Establishing National Human Diversity Genomic Projects

arXiv (Cornell University)(2025)10.48550/arxiv.2510.19869

N/A

0DataRank · unranked

0 citations

Walter Wolfsberger, Karishma Chhugani, Yu-Ning Huang, Valerii Pokrytiuk, Khrystyna Shchubelka +36 more

X chromosome dosage of histone demethylase KDM5C determines sex differences in adiposity

Journal of Clinical Investigation(2020)10.1172/jci140223

N/A

0DataRank · unranked

135 citations

Carrie B. Wiese, Xuqi Chen, Rozeta Avetisyan, Emilio Ronquillo, Feiyang Ma +13 more

Metabolic reprogramming and epigenetic changes of vital organs in SARS-CoV-2–induced systemic toxicity

JCI Insight(2020)10.1172/jci.insight.145027

N/A

0DataRank · unranked

88 citations

Feiyang Ma, Tomohiro Yokota, Gustavo Garcia, Amelia Palermo, Yijie Wang +19 more

Cell-free DNA Methylation and Transcriptomic Signature Prediction of Pregnancies with Adverse Outcomes

Epigenetics(2020)10.1080/15592294.2020.1816774

N/A

0DataRank · unranked

68 citations

Qingjiao Li, Wenyuan Li, Shanthie Thamotharan, Anela Tosevska, Marco Morselli +6 more

Targeted bisulfite sequencing for biomarker discovery

Methods(2020)10.1016/j.ymeth.2020.07.006

N/A

0DataRank · unranked

66 citations

Colin Farrell, Liudmilla Rubbi, Heather L. Fehling, Rebecca S. Henkhaus, Matteo Pellegrini +1 more

Extracellular traps released by antimicrobial TH17 cells contribute to host defense

Journal of Clinical Investigation(2020)10.1172/jci141594

N/A

0DataRank · unranked

53 citations

Alice Mouton, Rosane M. B. Teles, Thomas A. Weston, Marco Morselli, Priscila R. Andrade +3 more

Epigenetic Suppression of Transgenic T-cell Receptor Expression via Gamma-Retroviral Vector Methylation in Adoptive Cell Transfer Therapy

Cancer Discovery(2020)10.1158/2159-8290.cd-20-0300

N/A

0DataRank · unranked

17 citations

Colin Farrell, Marco Morselli, Liudmilla Rubbi, Katie M. Campbell, Mignonette H. Macabali +5 more

Creating New β-Globin-Expressing Lentiviral Vectors by High-Resolution Mapping of Locus Control Region Enhancer Sequences

Molecular Therapy — Methods & Clinical Development(2020)10.1016/j.omtm.2020.04.006

N/A

0DataRank · unranked

17 citations

Feiyang Ma, Mildred J. Unti, Devin Brown, Paul G. Ayoub, Curtis Tam +10 more

A High-Content Screen Identifies Drugs That Restrict Tumor Cell Extravasation across the Endothelial Barrier

Cancer Research(2020)10.1158/0008-5472.can-19-3911

N/A

0DataRank · unranked

12 citations

Ana Mompeón, Jonathan Freshman, Divya P. Prajapati, Gloria E. Hernandez, Vanessa M. Freitas +11 more

Impacts of ciliary neurotrophic factor on the retinal transcriptome in a mouse model of photoreceptor degeneration

Scientific Reports(2020)10.1038/s41598-020-63519-1

N/A

0DataRank · unranked

12 citations

Kun-Do Rhee, Matteo Pellegrini, Xian-Jie Yang, Yanjie Wang

Omega‐3 fatty acids increase OXPHOS energy for immune therapy of Alzheimer disease patients

The FASEB Journal(2020)10.1096/fj.202000669rr

N/A

0DataRank · unranked

9 citations

Jessica Ding, Aracely Simental, Hayk Mirzoyan, William Lee, Graciel Diamante +11 more

ER Stress Regulates Immunosuppressive Function of Myeloid Derived Suppressor Cells in Leprosy that Can Be Overcome in the Presence of IFN-γ

iScience(2020)10.1016/j.isci.2020.101050

N/A

0DataRank · unranked

8 citations

Aaron Choi, Roksana Shirazi, Hannah Bersabe, Esther Park, Philip O. Scumpia +6 more

How prior pair-bonding experience affects future bonding behavior in monogamous prairie voles

Hormones and Behavior(2020)10.1016/j.yhbeh.2020.104847

N/A

0DataRank · unranked

35 citations

Matteo Pellegrini, Katelyn M. Gordon, Zoe R. Donaldson, Kelsey J. Harbert

Dynamic changes in chromatin accessibility, altered adipogenic gene expression, and total versus de novo fatty acid synthesis in subcutaneous adipose stem cells of normal-weight polycystic ovary syndrome (PCOS) women during adipogenesis: evidence of cellular programming

Clinical Epigenetics(2020)10.1186/s13148-020-00970-x

N/A

0DataRank · unranked

34 citations

Smriti Sanchita, Catherine T. Pham, Brett A. Davis, Mariam Okhovat, Xiangming Ding +11 more

Matteo Pellegrini

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