Soha Hassoun

Biochemistry, Genetics and Molecular BiologyComputer ScienceEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 14 papers. Top paper: “Learning graph representations of biochemical networks and its application to enzymatic link prediction”.

Learning graph representations of biochemical networks and its application to enzymatic link prediction

Bioinformatics(2020)10.1093/bioinformatics/btaa881

N/A

0DataRank · unranked

12 citations

Liping Liu, Soha Hassoun, Julie Jiang

Enzyme promiscuity prediction using hierarchy-informed multi-label classification

Bioinformatics(2021)10.1093/bioinformatics/btab054

N/A

0DataRank · unranked

35 citations

Michael C. Hughes, Soha Hassoun, Gian Marco Visani

Analysis of metabolic network disruption in engineered microbial hosts due to enzyme promiscuity

Metabolic Engineering Communications(2021)10.1016/j.mec.2021.e00170

N/A

0DataRank · unranked

19 citations

Sara A. Amin, Trevor B. Nicks, Venkatesh Endalur Gopinarayanan, Nikhil U. Nair, Soha Hassoun +1 more

Recent advances in mass spectrometry-based computational metabolomics

Current Opinion in Chemical Biology(2023)10.1016/j.cbpa.2023.102288

N/A

0DataRank · unranked

65 citations

Justin J. J. van der Hooft, Haley Chatelaine, Corey D. Broeckling, Nicola Zamboni, Soha Hassoun +2 more

Using graph neural networks for site-of-metabolism prediction and its applications to ranking promiscuous enzymatic products

Bioinformatics(2023)10.1093/bioinformatics/btad089

N/A

0DataRank · unranked

28 citations

Liping Liu, Soha Hassoun, Vladimir Porokhin

CSI: Contrastive data Stratification for Interaction prediction and its application to compound–protein interaction prediction

Bioinformatics(2023)10.1093/bioinformatics/btad456

N/A

0DataRank · unranked

7 citations

Dilip Krishnan, Soha Hassoun, Apurva Kalia

On Separate Normalization in Self-supervised Transformers

arXiv (Cornell University)(2023)10.48550/arxiv.2309.12931

N/A

0DataRank · unranked

1 citations

Yinkai Wang, Yuanqi Du, Soha Hassoun, Liping Liu, Chen, Xiaohui

An Ensemble Spectral Prediction (ESP) model for metabolite annotation

Bioinformatics(2024)10.1093/bioinformatics/btae490

N/A

0DataRank · unranked

14 citations

Yan Zhou Chen, Apurva Kalia, Hao Zhu, Liping Liu, Soha Hassoun +1 more

Molecular structure discovery for untargeted metabolomics using biotransformation rules and global molecular networking

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.04.578795

N/A

0DataRank · unranked

0 citations

Wout Bittremieux, Soha Hassoun, Margaret R. Martin

Computational Analysis of the Gut Microbiota-Mediated Drug Metabolism

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.20.629788

N/A

0DataRank · unranked

0 citations

Alberto Naveira Montalvo, Soha Hassoun, Sammie Chum

Evaluation of search-enabled pretrained Large Language Models on retrieval tasks for the PubChem database

Bioinformatics Advances(2024)10.1093/bioadv/vbaf064

N/A

0DataRank · unranked

0 citations

Soha Hassoun, Ash Sze

JESTR: Joint Embedding Space Technique for Ranking candidate molecules for the annotation of untargeted metabolomics data

Bioinformatics(2025)10.1093/bioinformatics/btaf354

N/A

0DataRank · unranked

6 citations

Yan Zhou Chen, Dilip Krishnan, Soha Hassoun, Apurva Kalia

Computational analysis of the gut microbiota-mediated drug metabolism

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.03.016

N/A

0DataRank · unranked

5 citations

Alberto Naveira Montalvo, Soha Hassoun, Sammie Chum

MADGEN: Mass-Spec attends to De Novo Molecular generation

arXiv (Cornell University)(2025)10.48550/arxiv.2501.01950

N/A

0DataRank · unranked

3 citations

Chen, Xiaohui, Liping Liu, Soha Hassoun, Yinkai Wang