Sridhar Hannenhalli

Also affiliated with National Cancer Institute, National Cancer Institute, Center for Cancer Research

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

11.2Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Sequence of the Human Genome

Science(2001)10.1126/science.1058040

Top 1%

11.2DataRank

Top 1%13680 citations

Mark D. Adams, Eugene W. Myers, Peter W. Li, Richard J. Mural, Granger G. Sutton +340 more

Papers

Driven by 48 papers — median percentile 95. Top paper: “The Sequence of the Human Genome”.

The Sequence of the Human Genome

Science(2001)10.1126/science.1058040

Top 1%

11.2DataRank

Top 1%13680 citations

Mark D. Adams, Eugene W. Myers, Peter W. Li, Richard J. Mural, Granger G. Sutton +340 more

Why Transcription Factor Binding Sites Are Ten Nucleotides Long

Genetics(2012)10.1534/genetics.112.143370

N/A

5.6DataRank · unranked

187 citations

Sridhar Hannenhalli, Joshua B Plotkin, Alexander J Stewart

Identification of transcription factor binding sites in the human genome sequence

Mammalian Genome(2002)10.1007/s00335-002-2175-6

Top 5%

4.6DataRank

Top 5%111 citations

Sridhar Hannenhalli, Samuel Levy

Predicting tissue-specific gene expression from whole blood transcriptome

Science Advances(2021)10.1126/sciadv.abd6991

N/A

2.6DataRank · unranked

92 citations

Kun Wang, Eytan Ruppin, Sridhar Hannenhalli, Mahashweta Basu

Ligand dependent gene regulation by transient ERα clustered enhancers

PLoS Genetics(2020)10.1371/journal.pgen.1008516

N/A

0.574DataRank · unranked

45 citations

Deepanshu Soota, Zubairul Islam, Sudeshna Majumdar, Rajat Mann, Sweety Meel +7 more

De novo human brain enhancers created by single nucleotide mutations

Research Square(2021)10.21203/rs.3.rs-765891/v1

N/A

0.292DataRank · unranked

6 citations

Sridhar Hannenhalli, Ivan Ovcharenko, Shan Li

Protocol for using single-cell sequencing to study the heterogeneity of NF1 nerve sheath tumors from clinical biospecimens

STAR Protocols(2023)10.1016/j.xpro.2023.102297

N/A

0.269DataRank · unranked

5 citations

Vishaka Gopalan, Neeraja Syed, Sridhar Hannenhalli, Jack F. Shern, Xiyuan Zhang

Cross-species identification of cancer-resistance associated genes uncovers their relevance to human cancer risk

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.19.444895

N/A

0.104DataRank · unranked

1 citations

Kuoyuan Cheng, Lamis Naddaf, Elad Sharon, Lipika R. Pal, Padma Sheila Rajagopal +7 more

Prioritizing and characterizing functionally relevant genes across human tissues

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009194

N/A

0DataRank · unranked

23 citations

Sarthak Sahoo, Arashdeep Singh, Sridhar Hannenhalli, Gowthami Somepalli

A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDAC

Cancer Research(2021)10.1158/0008-5472.can-21-0427

N/A

0DataRank · unranked

18 citations

Arashdeep Singh, Farid Rashidi Mehrabadi, Li Wang, Eytan Ruppin, H. Efsun Arda +2 more

A transcription-centric model of SNP-age interaction

PLoS Genetics(2021)10.1371/journal.pgen.1009427

N/A

0DataRank · unranked

9 citations

Mahashweta Basu, Justin Malin, Sridhar Hannenhalli, Kun Wang

Cross-species identification of PIP5K1-, splicing- and ubiquitin-related pathways as potential targets for RB1-deficient cells

PLoS Genetics(2021)10.1371/journal.pgen.1009354

N/A

0DataRank · unranked

8 citations

Arashdeep Singh, Sharon L. Hsieh, Yanhui Hu, Richard Binari, Christopher J. Lord +4 more

A transcriptionally distinct subpopulation of healthy acinar cells exhibit features of pancreatic progenitors and PDAC

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.04.425042

N/A

0DataRank · unranked

1 citations

Arashdeep Singh, Farid Rashidi, Li Wang, Eytan Ruppin, Efsun Arda +2 more

miRSCAPE - Inferring miRNA expression in single-cell clusters

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.29.454389

N/A

0DataRank · unranked

0 citations

Vishaka Gopalan, Sridhar Hannenhalli, Gülden Olgun

De novo human brain enhancers created by single nucleotide mutations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.04.451055

N/A

0DataRank · unranked

0 citations

Sridhar Hannenhalli, Ivan Ovcharenko, Shan Li

Single-cell sequencing reveals activation of core transcription factors in PRC2-deficient malignant peripheral nerve sheath tumor

Cell Reports(2022)10.1016/j.celrep.2022.111363

N/A

0DataRank · unranked

27 citations

Hannah E. Lou, Vishaka Gopalan, Zhihui Liu, Hilda Jafarah, Haiyan Lei +10 more

Immune cell gene expression signatures in diffuse glioma are associated with IDH mutation status, patient outcome and malignant cell state, and highlight the importance of specific cell subsets in glioma biology

Acta Neuropathologica Communications(2022)10.1186/s40478-022-01323-w

N/A

0DataRank · unranked

26 citations

Saleembhasha Asanigari, Hye‐Jung Chung, Karen Dazelle, Arashdeep Singh, Sridhar Hannenhalli +2 more

miRSCAPE - inferring miRNA expression from scRNA-seq data

iScience(2022)10.1016/j.isci.2022.104962

N/A

0DataRank · unranked

19 citations

Vishaka Gopalan, Sridhar Hannenhalli, Gülden Olgun

A Path-Based Analysis of Infected Cell Line and COVID-19 Patient Transcriptome Reveals Novel Potential Targets and Drugs Against SARS-CoV-2

Frontiers in Immunology(2022)10.3389/fimmu.2022.918817

N/A

0DataRank · unranked

16 citations

Narmada Sambaturu, Gülden Olgun, Sridhar Hannenhalli, Piyush Agrawal

Broad misappropriation of developmental splicing profile by cancer in multiple organs

Nature Communications(2022)10.1038/s41467-022-35322-1

N/A

0DataRank · unranked

11 citations

Arati Rajeevan, Vishaka Gopalan, Piyush Agrawal, Chi‐Ping Day, Sridhar Hannenhalli +1 more

A path-based analysis of infected cell line and COVID-19 patient transcriptome reveals novel potential targets and drugs against SARS-CoV-2

Research Square(2022)10.21203/rs.3.rs-1474136/v1

N/A

0DataRank · unranked

2 citations

Narmada Sambaturu, Gülden Olgun, Sridhar Hannenhalli, Piyush Agrawal

Transcription factors organize into functional groups on the linear genome and in 3D chromatin

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.06.487423

N/A

0DataRank · unranked

0 citations

Sridhar Hannenhalli, Leelavati Narlikar, Rahul Siddharthan, Rakesh Netha Vadnala

Dysregulated Spliceosome Activity Involves Increased Intron Retention Plus Upregulation and Phosphorylation of SF3B1 in Chronic Lymphocytic Leukemia

Research Square(2022)10.21203/rs.3.rs-1622375/v1

N/A

0DataRank · unranked

0 citations

Hiren Karathia, Deepak Kumar, Roberto Vera Alvarez, Paula A. Lengerke-Diaz, José Vicente Forero-Forero +15 more

De novo human brain enhancers created by single-nucleotide mutations

Science Advances(2023)10.1126/sciadv.add2911

N/A

0DataRank · unranked

36 citations

Sridhar Hannenhalli, Ivan Ovcharenko, Shan Li

Noncoding RNA circuitry in melanoma onset, plasticity, and therapeutic response

Pharmacology & Therapeutics(2023)10.1016/j.pharmthera.2023.108466

N/A

0DataRank · unranked

30 citations

Ioannis Grammatikakis, Arin Ghosh, Vishaka Gopalan, Gülden Olgun, Huaitian Liu +9 more

Towards a Synthesis of the Non-Genetic and Genetic Views of Cancer in Understanding Pancreatic Ductal Adenocarcinoma Initiation and Prevention

Cancers(2023)10.3390/cancers15072159

N/A

0DataRank · unranked

1 citations

Sridhar Hannenhalli, Vishaka Gopalan

Predicting tumor immune microenvironment and checkpoint therapy response of head & neck cancer patients from blood immune single-cell transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.17.524455

N/A

0DataRank · unranked

4 citations

Tiangen Chang, Fiorella Schischlik, Kun Wang, Sanju Sinha, Sridhar Hannenhalli +3 more

Predicting gene expression changes upon epigenomic drug treatment

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.20.549955

N/A

0DataRank · unranked

3 citations

Vishaka Gopalan, Sridhar Hannenhalli, Piyush Agrawal

Data from A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDAC

(2023)10.1158/0008-5472.c.6512943.v1

Top 100%

0DataRank

Top 100%0 citations

Arashdeep Singh, Farid Rashidi Mehrabadi, Li Wang, Eytan Ruppin, H. Efsun Arda +2 more

Network-based approach elucidates critical genes in BRCA subtypes and chemotherapy response in Triple Negative Breast Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.21.541618

N/A

0DataRank · unranked

0 citations

Navami Jain, Vishaka Gopalan, Annan Timon, Arashdeep Singh, Padma Sheila Rajagopal +2 more

Predicting gene expression changes upon epigenomic drug treatment

F1000Research(2023)10.12688/f1000research.140273.1

N/A

0DataRank · unranked

0 citations

Vishaka Gopalan, Sridhar Hannenhalli, Piyush Agrawal

Inferring Characteristics of the Tumor Immune Microenvironment of Patients with HNSCC from Single-Cell Transcriptomics of Peripheral Blood

Cancer Research Communications(2024)10.1158/2767-9764.crc-24-0092

N/A

0DataRank · unranked

10 citations

Tiangen Chang, Fiorella Schischlik, Kun Wang, Sanju Sinha, Sridhar Hannenhalli +3 more

Network-based approach elucidates critical genes in BRCA subtypes and chemotherapy response in triple negative breast cancer

iScience(2024)10.1016/j.isci.2024.109752

N/A

0DataRank · unranked

9 citations

Navami Jain, Vishaka Gopalan, Annan Timon, Arashdeep Singh, Padma Sheila Rajagopal +2 more

Characterizing the pan-cancer role of exosomal miRNAs in metastasis across cancers

Computational and Structural Biotechnology Journal(2024)10.1016/j.csbj.2024.12.025

N/A

0DataRank · unranked

7 citations

Gülden Olgun, Arashdeep Singh, Vishaka Gopalan, Sridhar Hannenhalli, Piyush Agrawal

Aberrant spliceosome activity via elevated intron retention and upregulation and phosphorylation of SF3B1 in chronic lymphocytic leukemia

Molecular Therapy — Nucleic Acids(2024)10.1016/j.omtn.2024.102202

N/A

0DataRank · unranked

3 citations

Hiren Karathia, Deepak Kumar, Roberto Vera Alvarez, Jose Vicente Forero-Forero, Eider Moreno +15 more

Protocol for identifying key genes using network-based approach as an alternative to differential expression analysis

STAR Protocols(2024)10.1016/j.xpro.2024.103472

N/A

0DataRank · unranked

1 citations

Sridhar Hannenhalli, Piyush Agrawal

Notch1 sets the molecular clock for T cell development

Research Square(2024)10.21203/rs.3.rs-4966211/v1

N/A

0DataRank · unranked

0 citations

Mladen Mitrovic, Grozdan Cvijetic, Shanta Murthy, Robert Ivánek, David Schreiner +7 more

Non-coding genetic variants underlying higher prostate cancer risk in men of African ancestry

Research Square(2024)10.21203/rs.3.rs-5485172/v1

N/A

0DataRank · unranked

0 citations

Shan Li, Kaniz Fatema, Sundarraj Nidharshan, Arashdeep Singh, Padma Sheila Rajagopal +3 more

Resistance signatures manifested in early drug response across cancer types and species

Cancer Drug Resistance(2025)10.20517/cdr.2025.112

N/A

0DataRank · unranked

1 citations

Allison V. Mitchell, Priya Mondal, Vishaka Datta, Arashdeep Singh, Michael M. Gottesman +2 more

Non-coding genetic variants underlying higher prostate cancer risk in men of African ancestry

Nature Communications(2025)10.1038/s41467-025-64631-4

N/A

0DataRank · unranked

0 citations

Kaniz Fatema, Nidharshan Sundarraj, Arashdeep Singh, Padma Sheila Rajagopal, Dimple Notani +3 more

Resistance Signatures Manifested in Early Drug Response in Cancer and Across Species

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.05.602281

N/A

0DataRank · unranked

0 citations

Allison V. Mitchell, Priya Mondal, Vishaka Gopalan, Arashdeep Singh, Gottesman Michael +2 more

Modeling regulatory motifs

Bioinformatics for Biologists(2011)10.1017/cbo9780511984570.009

N/A

0DataRank · unranked

0 citations

Sridhar Hannenhalli

An Integrated Epigenomic and Transcriptomic Map of Mouse and Human αβ T Cell Development

Immunity(2020)10.1016/j.immuni.2020.10.024

N/A

0DataRank · unranked

79 citations

Vishaka Gopalan, Thomas Ciucci, Allison Ruchinskas, Zachary Rae, Manon Lagarde +9 more

PathExt: a general framework for path-based mining of omics-integrated biological networks

Bioinformatics(2020)10.1093/bioinformatics/btaa941

N/A

0DataRank · unranked

21 citations

Vaidehi Pusadkar, Sridhar Hannenhalli, Nagasuma Chandra, Narmada Sambaturu

PathExt: a general framework for path-based mining of omics-integrated biological networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.21.913418

N/A

0DataRank · unranked

2 citations

Vaidehi Pusadkar, Sridhar Hannenhalli, Nagasuma Chandra, Narmada Sambaturu

Whole exome precision oncology targeting synthetic lethal vulnerabilities across the tumor transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.16.951699

N/A

0DataRank · unranked

1 citations

Nishanth Ulhas Nair, Lesley M. Chapman, Sanju Sinha, Kun Wang, Houngui Cha +10 more

Genetically engineered myeloid cells rebalance the core immune suppression program in metastasis

Cell(2021)10.1016/j.cell.2021.02.048

N/A

0DataRank · unranked

203 citations

Daniel W. Beury, Vishaka Gopalan, Arielle K. Tycko, Haiying Qin, Miranda E. Clements +14 more

Synthetic lethality-mediated precision oncology via the tumor transcriptome

Cell(2021)10.1016/j.cell.2021.03.030

N/A

0DataRank · unranked

159 citations

Nishanth Ulhas Nair, Gal Dinstag, Lesley M. Chapman, Youngmin Chung, Kun Wang +18 more

Sridhar Hannenhalli

Indexed papers

Top data-sharing exemplar

Papers