Nathan Salomonis

Cincinnati Children's Hospital Medical Center

Also affiliated with University of Cincinnati, University of Cincinnati Medical Center

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.7Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors

Nature Immunology(2024)10.1038/s41590-024-01782-4

Top 14%

1.5DataRank

Top 14%80 citations

Baobao Song, Maximillian J. Carlino, Guangyuan Li, Kyle Ferchen, Mi Chen +21 more

Papers

Driven by 58 papers — median percentile 29. Top paper: “Sex-associated differences in frequencies and prognostic impact of recurrent genetic alterations in adult acute myeloid leukemia (Alliance, AMLCG)”.

Sex-associated differences in frequencies and prognostic impact of recurrent genetic alterations in adult acute myeloid leukemia (Alliance, AMLCG)

Leukemia(2023)10.1038/s41375-023-02068-8

N/A

1.8DataRank · unranked

39 citations

Deedra Nicolet, Krzysztof Mrózek, Ayse S. Yilmaz, Jessica Kohlschmidt, Karilyn Larkin +35 more

Monocyte and bone marrow macrophage transcriptional phenotypes in systemic juvenile idiopathic arthritis reveal TRIM8 as a mediator of IFN-γ hyper-responsiveness and risk for macrophage activation syndrome

Annals of the Rheumatic Diseases(2020)10.1136/annrheumdis-2020-217470

N/A

1.6DataRank · unranked

50 citations

Alex Pickering, Thuy Do, Sanjeev Dhakal, Ndate Fall, Daniel Schnell +5 more

An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors

Nature Immunology(2024)10.1038/s41590-024-01782-4

Top 14%

1.5DataRank

Top 14%80 citations

Baobao Song, Maximillian J. Carlino, Guangyuan Li, Kyle Ferchen, Mi Chen +21 more

DeepImmuno: deep learning-empowered prediction and generation of immunogenic peptides for T-cell immunity

Briefings in Bioinformatics(2021)10.1093/bib/bbab160

N/A

0.757DataRank · unranked

155 citations

Balaji Iyer, V. B. Surya Prasath, Yizhao Ni, Nathan Salomonis, Guangyuan Li

MBNL1 regulates essential alternative RNA splicing patterns in MLL-rearranged leukemia

Nature Communications(2020)10.1038/s41467-020-15733-8

N/A

0.650DataRank · unranked

75 citations

Arun Gurunathan, Jason Clark, Matthew Burwinkel, Mark Wunderlich, Mikaela R. Berger +7 more

Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy

Science Translational Medicine(2024)10.1126/scitranslmed.ade2886

N/A

0.641DataRank · unranked

71 citations

Shweta Mahajan, Siyuan Ma, Erin D. Jeffery, Xuan Zhang, Anukana Bhattacharjee +8 more

Multiple Nf1 Schwann cell populations reprogram the plexiform neurofibroma tumor microenvironment

JCI Insight(2022)10.1172/jci.insight.154513

N/A

0.628DataRank · unranked

65 citations

Kwangmin Choi, Jianqiang Wu, Xiyuan Zhang, Melissa R. Perrino, Nathan Salomonis +3 more

Ontogeny and function of the circadian clock in intestinal organoids

The EMBO Journal(2021)10.15252/embj.2020106973

N/A

0.581DataRank · unranked

47 citations

Miri Park, Mari Kim, Toru Matsuura, Gang Wu, Danilo E. F. L. Flôres +15 more

Retinoid X receptor promotes hematopoietic stem cell fitness and quiescence and preserves hematopoietic homeostasis

Blood(2022)10.1182/blood.2022016832

N/A

0.489DataRank · unranked

25 citations

Jesús Porcuna, Ramesh C. Nayak, Ana Paredes, Haixia Niu, Vanessa Núñez +10 more

Slow cycling and durable Flt3+ progenitors contribute to hematopoiesis under native conditions

The Journal of Experimental Medicine(2023)10.1084/jem.20231035

N/A

0.434DataRank · unranked

17 citations

Baobao Song, Vinothini Govindarajah, Samantha Good, Ashok Arasu, E. Broderick Hinton +8 more

Bile acids engage the SIPR-STAT3 signaling axis to modulate regulatory T cell responses in fibrosing cholangiopathies

Journal of Hepatology(2025)10.1016/j.jhep.2025.05.032

N/A

0.360DataRank · unranked

10 citations

Zi Yang, Immaculeta Osuji, Michelle S. M. A. Damen, Annika Yang vom Hofe, Manavi Singh +21 more

miR-876-3p is a tumor suppressor on 9p21 that is inactivated in melanoma and targets ERK

Journal of Translational Medicine(2024)10.1186/s12967-024-05527-7

N/A

0.292DataRank · unranked

6 citations

Imran Khan, Anukana Bhattacharjee, Juifang Fan, Robyn L. Jones, Anima Sharma +7 more

Ontogeny and function of the circadian clock in intestinal organoids

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.22.053223

N/A

0.208DataRank · unranked

3 citations

Miri Park, Toru Matsuura, Gang Wu, Danilo E. F. L. Flôres, Krithika R. Subramanian +14 more

CellDrift: Inferring Perturbation Responses in Temporally-Sampled Single Cell Data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.13.488194

Top 71%

0.136DataRank

Top 71%1 citations

Daniel Schnell, Guangyuan Li, Nathan Salomonis, V. B. Surya Prasath, Rhonda D. Szczesniak +2 more

After the Infection: A Survey of Pathogens and Non-communicable Human Disease

medRxiv(2023)10.1101/2023.09.14.23295428

Top 72%

0.111DataRank

Top 72%1 citations

Daniel Schnell, Sreeja Parameswaran, Kevin Ernst, Shannon K. O’Connor, Nathan Salomonis +5 more

Three-dimensional mapping identifies distinct vascular niches for myelopoiesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.02.014548

N/A

0.104DataRank · unranked

1 citations

Qingqing Wu, Courtney B. Johnson, André Olsson, Anastasiya Slaughter, Margot May +10 more

LAMP-5 is an essential inflammatory-signaling regulator and novel immunotherapy target for mixed lineage leukemia-rearranged acute leukemia

Haematologica(2021)10.3324/haematol.2020.257451

N/A

0DataRank · unranked

17 citations

Jason Clark, Matthew Burwinkel, Brenay Greenslade, Mark Wunderlich, Nathan Salomonis +6 more

Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data

STAR Protocols(2021)10.1016/j.xpro.2021.100989

N/A

0DataRank · unranked

8 citations

Michael Kotliar, Linara Gabitova-Cornell, Andrey Kartashov, Suraj Peri, Nathan Salomonis +3 more

Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primates

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.24.449766

N/A

0DataRank · unranked

3 citations

Shelby Steinmeyer, Paranthaman S. Kannan, Jerilyn K. Gray, Courtney M. Jackson, Shibabrata Mukherjee +28 more

Balance between protective and pathogenic immune responses to pneumonia in the neonatal lung enforced by gut microbiota

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.27.461705

N/A

0DataRank · unranked

0 citations

Shelby Steinmeyer, Madeline Bonfield, Timothy C. Wang, Jerilyn K. Gray, Ian Lewkowich +11 more

The balance between protective and pathogenic immune responses to pneumonia in the neonatal lung is enforced by gut microbiota

Science Translational Medicine(2022)10.1126/scitranslmed.abl3981

N/A

0DataRank · unranked

48 citations

Shelby Steinmeyer, Madeline Bonfield, Laura S. Peterson, Timothy Wang, Jerilyn K. Gray +12 more

Erythroblastic islands foster granulopoiesis in parallel to terminal erythropoiesis

Blood(2022)10.1182/blood.2022015724

N/A

0DataRank · unranked

41 citations

Katie Seu, Julien Papoin, David E. Muench, Diamantis G. Konstantinidis, André Olsson +11 more

Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primates

Science Translational Medicine(2022)10.1126/scitranslmed.abl8574

N/A

0DataRank · unranked

27 citations

Shelby Steinmeyer, Paranthaman S. Kannan, Jerilyn K. Gray, Courtney M. Jackson, Shibabrata Mukherjee +28 more

CellDrift: inferring perturbation responses in temporally sampled single-cell data

Briefings in Bioinformatics(2022)10.1093/bib/bbac324

N/A

0DataRank · unranked

11 citations

Daniel Schnell, Guangyuan Li, Nathan Salomonis, V. B. Surya Prasath, Rhonda D. Szczesniak +2 more

A potent myeloid response is rapidly activated in the lungs of premature Rhesus macaques exposed to intra-uterine inflammation

Mucosal Immunology(2022)10.1038/s41385-022-00495-x

N/A

0DataRank · unranked

7 citations

Martin Demmert, Shibabrata Mukherjee, Travis Isaacs, R.C.A. Thompson, Chase Chastain +13 more

Fetal maturation revealed by amniotic fluid cell-free transcriptome in rhesus macaques

JCI Insight(2022)10.1172/jci.insight.162101

N/A

0DataRank · unranked

3 citations

Daniel Schnell, Kenneth Eaton, Kashish Chetal, Paranthaman S. Kannan, Lisa A. Miller +6 more

BAFF and APRIL counterregulate susceptibility to inflammation-induced preterm birth

Cell Reports(2023)10.1016/j.celrep.2023.112352

N/A

0DataRank · unranked

13 citations

Maria E. Moreno‐Fernandez, Traci E. Stankiewicz, Jennifer L. Wayland, Adrienne N. Wilburn, Benjamin Weinhaus +9 more

Population-level single-cell genomics reveals conserved gene programs in systemic juvenile idiopathic arthritis

Journal of Clinical Investigation(2023)10.1172/jci166741

N/A

0DataRank · unranked

11 citations

Kairavee Thakkar, Sanjeev Dhakal, Elizabeth Baker, Kashish Chetal, Daniel Schnell +5 more

Repression of TRIM13 by chromatin assembly factor CHAF1B is critical for AML development

Blood Advances(2023)10.1182/bloodadvances.2022009438

N/A

0DataRank · unranked

10 citations

Chiharu Ishikawa, Xiaoqin Zhu, Sean Walulik, Timothy Nixon, Jessica K. Jordan +8 more

ThPOK is a critical multifaceted regulator of myeloid lineage development

Nature Immunology(2023)10.1038/s41590-023-01549-3

N/A

0DataRank · unranked

10 citations

André Olsson, Kyle Ferchen, Elizaveta K. Titerina, Kashish Chetal, Émmanuelle Nicolas +8 more

Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart

Nature Communications(2023)10.1038/s41467-023-41184-y

N/A

0DataRank · unranked

8 citations

Enrico D’Aniello, Padmapriyadarshini Ravisankar, Kairavee Thakkar, Ronald J. Vagnozzi, Hee‐Woong Lim +3 more

pyInfinityFlow: optimized imputation and analysis of high-dimensional flow cytometry data for millions of cells

Bioinformatics(2023)10.1093/bioinformatics/btad287

N/A

0DataRank · unranked

2 citations

Nathan Salomonis, H. Leighton Grimes, Kyle Ferchen

Quantifying tumor specificity using Bayesian probabilistic modeling for drug target discovery and prioritization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.03.530994

N/A

0DataRank · unranked

3 citations

Anukana Bhattacharjee, Nathan Salomonis, Guangyuan Li

Obesity Uncovers the Presence of Inflammatory Lung Macrophage Subsets With an Adipose Tissue Transcriptomic Signature in Influenza Virus Infection

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae535

N/A

0DataRank · unranked

9 citations

Cassidy J Ulanowicz, Michelle S. M. A. Damen, John Eom, Keisuke Sawada, Hak‐Jae Chung +9 more

Quantifying tumor specificity using Bayesian probabilistic modeling for drug and immunotherapeutic target discovery

Cell Reports Methods(2024)10.1016/j.crmeth.2024.100900

N/A

0DataRank · unranked

3 citations

Daniel Schnell, Anukana Bhattacharjee, Mark Yarmarkovich, Nathan Salomonis, Guangyuan Li

Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.12.584681

N/A

0DataRank · unranked

11 citations

Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal +29 more

Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms

Molecular Cell(2025)10.1016/j.molcel.2025.03.004

N/A

0DataRank · unranked

35 citations

Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal +33 more

Single-cell transcriptional landscape of liver transplant rejection reveals tissue persistence of clonally expanded, treatment-resistant T cells

American Journal of Transplantation(2025)10.1016/j.ajt.2025.08.004

N/A

0DataRank · unranked

7 citations

Erica A. K. DePasquale, Gousia Begum, Krishna M. Roskin, Michael Kotliar, Artem Barski +6 more

A survey of pathogenic involvement in non-communicable human diseases

Communications Medicine(2025)10.1038/s43856-025-00956-x

N/A

0DataRank · unranked

6 citations

Dan Schnell, Sreeja Parameswaran, Kevin Ernst, Shannon K. O’Connor, Nathan Salomonis +5 more

DEK promotes mammary hyperplasia and is associated with H3K27me3 epigenetic modifications

Life Science Alliance(2025)10.26508/lsa.202503230

N/A

0DataRank · unranked

6 citations

Ashley Leck, Taylor E. Lange, Katherine Wilcher, Miranda S. Shephard, Aditi Paranjpe +6 more

Combinatorial therapy regimens targeting preclinical models of melanoma resistant to immune checkpoint blockade

Journal of Clinical Investigation(2025)10.1172/jci185220

N/A

0DataRank · unranked

0 citations

Aida Rodriguez-Brotons, Anukana Bhattacharjee, Vladimir Bezrookove, Altaf A. Dar, David de Semir +15 more

Asymmetrically Segregated Mitochondria Provide Cellular Memory of Hematopoietic Stem Cell Replicative History and Drive HSC Attrition

Cell stem cell(2020)10.1016/j.stem.2020.01.016

N/A

0DataRank · unranked

214 citations

Jingyi He, James Bartram, José Javier, Juying Xu, Ellen Fjellman +10 more

Bone Marrow Adipokine Mediates Hematopoietic Regeneration and Stem Cell Fitness

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.28.672647

N/A

0DataRank · unranked

0 citations

Angelo D’Alessandro, Abhishek K. Singh, Yi Zheng, John Manis, Li Chai +12 more

Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers

Nature Communications(2020)10.1038/s41467-020-20063-w

N/A

0DataRank · unranked

408 citations

Casey O. Swoboda, Chengyi Sun, Kashish Chetal, Xiaoting Chen, Matthew T. Weirauch +3 more

Mouse models of neutropenia reveal progenitor-stage-specific defects

Nature(2020)10.1038/s41586-020-2227-7

N/A

0DataRank · unranked

115 citations

André Olsson, Kyle Ferchen, Giang Pham, Rachel A. Serafin, Somchai Chutipongtanate +17 more

Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF

Bioinformatics(2020)10.1093/bioinformatics/btaa201

N/A

0DataRank · unranked

66 citations

Kashish Chetal, Daniel Schnell, Gowtham Atluri, Nathan Salomonis, Meenakshi Venkatasubramanian

Pbx4 limits heart size and fosters arch artery formation by partitioning second heart field progenitors and restricting proliferation

Development(2020)10.1242/dev.185652

N/A

0DataRank · unranked

15 citations

Kelsey Linstrum, Padmapriyadarshini Ravisankar, Kashish Chetal, Nathan Salomonis, Joshua S. Waxman +1 more

FOXO activity adaptation safeguards the hematopoietic stem cell compartment in hyperglycemia

Blood Advances(2020)10.1182/bloodadvances.2020001826

N/A

0DataRank · unranked

10 citations

Jung-Mi Lee, Michael Solomon, Bryan Goddard, Ramesh C. Nayak, Kalpana Nattamai +5 more

Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.14.041400

N/A

0DataRank · unranked

31 citations

Casey O. Swoboda, Chengyi Sun, Kashish Chetal, Xiaoting Chen, Matthew T. Weirauch +3 more

DeepImmuno: Deep learning-empowered prediction and generation of immunogenic peptides for T cell immunity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.24.424262

N/A

0DataRank · unranked

14 citations

Balaji Iyer, V. B. Surya Prasath, Yizhao Ni, Nathan Salomonis, Guangyuan Li

PKM2-dependent metabolic skewing of hepatic Th17 cells regulates pathogenesis of non-alcoholic fatty liver disease

Cell Metabolism(2021)10.1016/j.cmet.2021.04.018

N/A

0DataRank · unranked

141 citations

Daniel A. Giles, Jarren R. Oates, Calvin C. Chan, Michelle S. M. A. Damen, Jessica Doll +16 more

In situ mapping identifies distinct vascular niches for myelopoiesis

Nature(2021)10.1038/s41586-021-03201-2

N/A

0DataRank · unranked

119 citations

Qingqing Wu, Courtney B. Johnson, Giang Pham, Jeremy M. Kinder, André Olsson +14 more

Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies

Nature Communications(2021)10.1038/s41467-021-26623-y

N/A

0DataRank · unranked

69 citations

Yuichiro Miyaoka, Alessandro Bertero, Steven M. Blue, Matthew Spindler, Kenneth K. B. Tan +17 more

Short-term exposure to intermittent hypoxia leads to changes in gene expression seen in chronic pulmonary disease

eLife(2021)10.7554/elife.63003

N/A

0DataRank · unranked

46 citations

Yin Yeng Lee, Evelyn M. Gulla, Andrew Potter, Joseph A. Kitzmiller, Marc D. Ruben +6 more

IFN-γ is essential for alveolar macrophage–driven pulmonary inflammation in macrophage activation syndrome

JCI Insight(2021)10.1172/jci.insight.147593

N/A

0DataRank · unranked

36 citations

Nathan Salomonis, Maggie Henderlight, Christopher Woods, Kairavee Thakkar, Alexei A. Grom +5 more

Progenitor translatome changes coordinated by Tsc1 increase perception of Wnt signals to end nephrogenesis

Nature Communications(2021)10.1038/s41467-021-26626-9

N/A

0DataRank · unranked

25 citations

Eric W. Brunskill, Praneet Chaturvedi, Nathan Salomonis, Raphael Kopan, Alison E. Jarmas

The Rhesus Macaque Serves As a Model for Human Lateral Branch Nephrogenesis

Journal of the American Society of Nephrology(2021)10.1681/asn.2020101459

N/A

0DataRank · unranked

19 citations

Lyan Alkhudairy, Andrew Potter, S. Steven Potter, Kashish Chetal, Kairavee Thakkar +3 more

GM-CSF Programs Hematopoietic Stem and Progenitor Cells During Candida albicans Vaccination for Protection Against Reinfection

Frontiers in Immunology(2021)10.3389/fimmu.2021.790309

N/A

0DataRank · unranked

19 citations

Paula Guerrero, Antonio Jordán‐Pla, Ana Erades, Nathan Salomonis, H. Leighton Grimes +3 more

Nathan Salomonis

Indexed papers

Top data-sharing exemplar

Papers