Hui Shen

Also affiliated with Hubei University of Arts and Science, Xiangyang Central Hospital

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

28.3Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Cell(2018)10.1016/j.cell.2018.02.052

Top 2%

8.1DataRank

Top 2%3980 citations

Katherine A. Hoadley, Laila M. Poisson, Alexander J. Lazar, Andrew D. Cherniack, Albert J. Kovatich +866 more

Papers

Driven by 59 papers — median percentile 95. Top paper: “An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics”.

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Cell(2018)10.1016/j.cell.2018.02.052

Top 2%

8.1DataRank

Top 2%3980 citations

Katherine A. Hoadley, Laila M. Poisson, Alexander J. Lazar, Andrew D. Cherniack, Albert J. Kovatich +866 more

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

Cell(2018)10.1016/j.cell.2018.03.033

Top 3%

6.4DataRank

Top 3%447 citations

Matthew H. Bailey, Hoifung Poon, Vesteinn Thorsson, Antonio Colaprico, Andreas Bender +883 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

Cell Reports(2018)10.1016/j.celrep.2018.03.046

N/A

5.5DataRank · unranked

186 citations

Francisco Sanchez-Vega, Konnor C. La, Joshua Armenia, Walid K. Chatila, Augustin Luna +869 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Meta-Analysis of Genome-Wide Scans Provides Evidence for Sex- and Site-Specific Regulation of Bone Mass

Journal of Bone and Mineral Research(2007)10.1359/jbmr.060806

N/A

4.5DataRank · unranked

168 citations

Mandy Y Ng, Pak C. Sham, Elias Zintzaras, Saskia P. Hagenaars, Hong-Wen Deng +31 more

Phase II clinical trial of metformin as a cancer stem cell–targeting agent in ovarian cancer

JCI Insight(2020)10.1172/jci.insight.133247

N/A

3.2DataRank · unranked

193 citations

Daniel Chan, Jessica Shank, Kent A. Griffith, Huihui Fan, Robert Szulawski +17 more

Multiomics in primary and metastatic breast tumors from the AURORA US network finds microenvironment and epigenetic drivers of metastasis

Nature Cancer(2022)10.1038/s43018-022-00491-x

Top 9%

2.4DataRank

Top 9%114 citations

Toshinori Hinoue, Gregory Wheeler, Benjamin Kelly, Ana C. Garrido-Castro, Tomás Pascual +53 more

Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin

Cancer Cell(2023)10.1016/j.ccell.2023.07.013

N/A

1.8DataRank · unranked

107 citations

Rita Jui-Hsien Lu, Reyka G. Jayasinghe, Steven M. Foltz, Eduard Porta‐Pardo, Yifat Geffen +95 more

Integrated genomic analyses of ovarian carcinoma

Nature(2011)10.1038/nature10166

N/A

1.3DataRank · unranked

8094 citations

Debra Bell, Andrew Berchuck, Michael J. Birrer, Jeremy Chien, D. W. Cramer +268 more

Oncogenic Signaling Pathways in The Cancer Genome Atlas

Cell(2018)10.1016/j.cell.2018.03.035

N/A

1.2DataRank · unranked

3322 citations

Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor C. La +891 more

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Cell Reports(2021)10.1016/j.celrep.2021.108707

N/A

1.1DataRank · unranked

32 citations

Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago C. Silva +77 more

An autoencoder-based deep learning method for genotype imputation

Frontiers in Artificial Intelligence(2022)10.3389/frai.2022.1028978

N/A

0.827DataRank · unranked

21 citations

Jonathan Greenbaum, Joseph Luttrell, Weihua Zhou, Chong Wu, Zhe Luo +11 more

Cancer aneuploidies are shaped primarily by effects on tumour fitness

Nature(2023)10.1038/s41586-023-06266-3

N/A

0.702DataRank · unranked

107 citations

Shahab Sarmashghi, Nadja Zhakula-Kostadinova, Shu Zhang, Yohanna Georgis, Stephanie Hoyt +12 more

Molecular Features of Cancers Exhibiting Exceptional Responses to Treatment

Cancer Cell(2020)10.1016/j.ccell.2020.10.015

N/A

0.698DataRank · unranked

104 citations

Naoko Takebe, Toshinori Hinoue, Katherine A. Hoadley, Maria Cardenas, Alina M. Hamilton +41 more

Epigenomic Reprogramming toward Mesenchymal-Epithelial Transition in Ovarian-Cancer-Associated Mesenchymal Stem Cells Drives Metastasis

Cell Reports(2020)10.1016/j.celrep.2020.108473

N/A

0.685DataRank · unranked

95 citations

Huda I. Atiya, Yeh Wang, Thomas R. Pisanic, Tza‐Huei Wang, Ie‐Ming Shih +10 more

The Somatic Mosaicism across Human Tissues Network

Nature(2025)10.1038/s41586-025-09096-7

N/A

0.672DataRank · unranked

43 citations

Ji Won Oh, Yujin Angelina Choi, Nam Seop Lim, Boxun Zhao, Adam Voshall +365 more

DNA Methylation Dynamics and Dysregulation Delineated by High-Throughput Profiling in the Mouse

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.24.485667

Top 30%

0.658DataRank

Top 30%17 citations

Toshinori Hinoue, Bret Barnes, Owen Mitchell, Waleed Iqbal, Sol Moe Lee +23 more

Immunological and molecular features of the tumor microenvironment of long-term survivors of ovarian cancer

Journal of Clinical Investigation(2024)10.1172/jci179501

N/A

0.620DataRank · unranked

19 citations

Phineas T. Hamilton, Minh Tung Phung, Katy Milne, Bronwyn Harris, Shelby Thornton +73 more

ACLY and ACSS2 link nutrient-dependent chromatin accessibility to CD8 T cell effector responses

The Journal of Experimental Medicine(2024)10.1084/jem.20231820

N/A

0.561DataRank · unranked

41 citations

McLane J. Watson, Brandon M. Oswald, Shixin Ma, Benjamin K. Johnson, Lisa M. DeCamp +23 more

Menopausal hormone therapy prior to the diagnosis of ovarian cancer is associated with improved survival

Gynecologic Oncology(2020)10.1016/j.ygyno.2020.06.481

N/A

0.510DataRank · unranked

29 citations

Siri Peterson, Alice W. Lee, Bhramar Mukherjee, Kelly M. Bakulski, Aliya Alimujiang +46 more

Transcriptome and DNA methylome analyses reveal underlying mechanisms for the racial disparity in uterine fibroids

JCI Insight(2022)10.1172/jci.insight.160274

N/A

0.464DataRank · unranked

21 citations

Joshua A. Grey, Tyler J. Carpenter, Zachary Madaj, Kin H. Lau, Scott A. Givan +6 more

Efficient profiling of total RNA in single cells with STORM-seq

10.1101/2022.03.14.484332

N/A

0.434DataRank · unranked

17 citations

Mary F. Majewski, H. Josh Jang, Rebecca A. Siwicki, Marc Wegener, Ayush Semwal +17 more

Analytical protocol to identify local ancestry-associated molecular features in cancer

STAR Protocols(2021)10.1016/j.xpro.2021.100766

N/A

0.400DataRank · unranked

9 citations

Seunghun Han, Liangtao Zheng, Jeffrey S. Damrauer, Anab Kemal, Ashton C. Berger +35 more

Aged and BRCA -Mutated Stromal Cells Drive Epithelial Cell Transformation

Cancer Discovery(2025)10.1158/2159-8290.cd-24-0805

N/A

0.345DataRank · unranked

9 citations

Taylor Orellana, Grace Gorecki, Leonard Frisbie, Roja Baruwal, Swathi Suresh +18 more

omicsMIC: a comprehensive benchmarking platform for robust comparison of imputation methods in mass spectrometry-based omics data

NAR Genomics and Bioinformatics(2024)10.1093/nargab/lqae071

N/A

0.292DataRank · unranked

6 citations

Jiadong Ji, Kuan‐Jui Su, Chuan Qiu, Qing Tian, Lan‐Juan Zhao +5 more

Epigenetic reprogramming towards mesenchymal-epithelial transition in ovarian cancer-associated mesenchymal stem cells drives metastasis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.25.964197

N/A

0.269DataRank · unranked

5 citations

Huda I. Atiya, Yeh Wang, Thomas R. Pisanic, Tza‐Huei Wang, Ie−Ming Shih +6 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

Analysis of germline-driven ancestry-associated gene expression in cancers

STAR Protocols(2022)10.1016/j.xpro.2022.101586

N/A

0.165DataRank · unranked

2 citations

Rosalyn W. Sayaman, Donglei Hu, Scott Huntsman, Ashton C. Berger, Seunghun Han +37 more

Multiplatform Analysis of Primary and Metastatic Breast Tumors from the AURORA US Network identifies microenvironment and epigenetics drivers of metastasis

Research Square(2022)10.21203/rs.3.rs-1221704/v1

N/A

0.165DataRank · unranked

2 citations

Susana García‐Recio, Toshinori Hinoue4, Gregory Wheeler, Benjamin Kelly, Ana C. Garrido-Castro +49 more

Impact of BRCA mutations, age, surgical indication, and hormone status on the molecular phenotype of the human Fallopian tube

Nature Communications(2025)10.1038/s41467-025-58145-2

Top 70%

0.165DataRank

Top 70%2 citations

Svetlana Djirackor, Dalia K. Omran, Euihye Jung, Natalie Shih, Ritu Roy +15 more

Compartmap enables inference of higher-order chromatin structure in individual cells from scRNA-seq and scATAC-seq

bioRxiv (Cold Spring Harbor Laboratory)10.1101/2021.05.17.444465

N/A

0.126DataRank · unranked

1 citations

Jean-Philippe Fortin, Kasper D. Hansen, Hui Shen, Timothy J. Triche, Benjamin K. Johnson

Clinical Epigenetics and Epigenomics

Translational Bioinformatics(2016)10.1007/978-94-017-7543-4_10

N/A

0.111DataRank · unranked

1 citations

Fangtang Yu, Hong-Wen Deng, Hui Shen, Chuan Qiu

Multi-platform framework for mapping somatic retrotransposition in human tissues

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.07.680917

N/A

0.104DataRank · unranked

1 citations

Mingyun Bae, Jinhao Wang, Boxun Zhao, Khue Nguyen, Shayna Mallett +30 more

Comprehensive evaluation of the Infinium human MethylationEPIC v2 BeadChip

Epigenetics Communications(2023)10.1186/s43682-023-00021-5

N/A

0DataRank · unranked

86 citations

Sol Moe Lee, David Goldberg, Nathan J. Spix, Toshinori Hinoue, Hongtao Li +8 more

Epigenetic dosage identifies two major and functionally distinct β cell subtypes

Cell Metabolism(2023)10.1016/j.cmet.2023.03.008

N/A

0DataRank · unranked

56 citations

Luca Fagnocchi, Vanessa Wegert, Stefanos Apostle, Brooke Grimaldi, Tim Gruber +15 more

A Phase II Trial of Guadecitabine plus Atezolizumab in Metastatic Urothelial Carcinoma Progressing after Initial Immune Checkpoint Inhibitor Therapy

Clinical Cancer Research(2023)10.1158/1078-0432.ccr-22-3642

N/A

0DataRank · unranked

38 citations

Galen Hostetter, Alexander W. Macfarlane, Zachary Madaj, Eric A. Ross, Toshinori Hinoue +22 more

Cell State of Origin Impacts Development of Distinct Endometriosis-Related Ovarian Carcinoma Histotypes

Cancer Research(2023)10.1158/0008-5472.can-23-1362

N/A

0DataRank · unranked

28 citations

Huihui Fan, Karolin Heinze, Benjamin K. Johnson, Anna Leonova, Janine Senz +7 more

Statistical Significance of Clustering with Multidimensional Scaling

Journal of Computational and Graphical Statistics(2023)10.1080/10618600.2023.2219708

N/A

0DataRank · unranked

10 citations

Shankar Bhamidi, Yufeng Liu, Hui Shen

Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing

Bioinformatics(2023)10.1093/bioinformatics/btad729

N/A

0DataRank · unranked

6 citations

Wanding Zhou, Benjamin K. Johnson, Hui Shen, Jacob Morrison

Consistency of Lloyd's Algorithm Under Perturbations

arXiv (Cornell University)(2023)10.48550/arxiv.2309.00578

N/A

0DataRank · unranked

0 citations

Hui Shen, Shankar Bhamidi, Yufeng Liu, Vladas Pipiras, Dhruv Patel

BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies

Nucleic Acids Research(2024)10.1093/nar/gkae097

N/A

0DataRank · unranked

44 citations

Benjamin K. Johnson, Jacob Morrison, Ian Beddows, James Eapen, Efrat Katsman +8 more

Comprehensive molecular characterization of gastric adenocarcinoma

DSpace@MIT (Massachusetts Institute of Technology)(2020)10.17615/eyft-ty56

N/A

0DataRank · unranked

0 citations

Amaro Taylor‐Weiner, Andy Chu, Carrie Sougnez, Nils Weinhold, Sheila M. Reynolds +27 more

The Exceptional Responders Initiative: Feasibility of a National Cancer Institute Pilot Study

JNCI Journal of the National Cancer Institute(2020)10.1093/jnci/djaa061

N/A

0DataRank · unranked

33 citations

Lou Staudt, Naoko Takebe, David A. Wheeler, Linghua Wang, Maria Cardenas +34 more

Multi-scale variational autoencoder for imputation of missing values in untargeted metabolomics using whole-genome sequencing data

Computers in Biology and Medicine(2024)10.1016/j.compbiomed.2024.108813

N/A

0DataRank · unranked

9 citations

Kuan-Jui Su, Chong Wu, Xuewei Cao, Qiuying Sha, Wu Li +11 more

Sguq: Staged Graph Convolution Neural Network for Alzheimer's Disease Diagnosis Using Multi-Omics Data

SSRN Electronic Journal(2024)10.2139/ssrn.5007474

N/A

0DataRank · unranked

3 citations

Yixin Xie, Jeffrey D. Deng, Hui Shen, Hong‐Wen Deng, Weihua Zhou +2 more

Multi-View Integrative Approach For Imputing Short-Chain Fatty Acids and Identifying Key factors predicting Blood SCFA

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.25.614767

N/A

0DataRank · unranked

2 citations

Bo Tian, Chuan Qiu, Kuan-Jui Su, Lindong Jiang, Chen Zhao +15 more

ResSAT: Enhancing Spatial Transcriptomics Prediction from H&E- Stained Histology Images with Interactive Spot Transformer

Research Square(2024)10.21203/rs.3.rs-4707959/v1

N/A

0DataRank · unranked

1 citations

Yue Zhao, Hui Shen, Zhengming Ding, Hong-Wen Deng, Anqi Liu

Multiomics in primary and metastatic breast tumors from the AURORA US network finds microenvironment and epigenetic drivers of metastasis

UNC Libraries(2024)10.17615/m9ck-zv98

N/A

0DataRank · unranked

0 citations

Jonathan C. Silverstein, AURORA US Network, Melina E Sanders, P.W. Laird, C.M. Perou +53 more

High-coverage allele-resolved single-cell DNA methylation profiling by scDEEP-mC reveals cell lineage, X-inactivation state, and replication dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.01.616139

N/A

0DataRank · unranked

0 citations

Walid Abi Habib, Zhouwei Zhang, Emily Eugster, Hsiao-yun Milliron, David Sokol +11 more

High-coverage allele-resolved single-cell DNA methylation profiling reveals cell lineage, X-inactivation state, and replication dynamics

Nature Communications(2025)10.1038/s41467-025-61589-1

N/A

0DataRank · unranked

7 citations

Walid Abi Habib, Zhouwei Zhang, Emily Eugster, Hsiao-yun Milliron, David Sokol +11 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

Tranquillyzer: A Flexible Neural Network Framework for Structural Annotation and Demultiplexing of Long-Read Transcriptomes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.25.666829

N/A

0DataRank · unranked

1 citations

Jacob Morrison, Ian Beddows, Theron Palmer, Mary Rhodes, H. Josh Jang +3 more

Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods

STAR Protocols(2025)10.1016/j.xpro.2025.103681

N/A

0DataRank · unranked

0 citations

Victor H Apolonio, Vinicius S Chagas, Christopher K. Wong, Jordan Lee, Christina Yau +61 more

Cell division drives DNA methylation loss in late-replicating domains in primary human cells

Nature Communications(2022)10.1038/s41467-022-34268-8

N/A

0DataRank · unranked

86 citations

Paula A. Nolte, Hui Shen, Peter W. Laird, Jamie L. Endicott

Synthbar: A Lightweight Tool for Adding Synthetic Barcodes to Sequencing Reads

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.30.657070

N/A

0DataRank · unranked

0 citations

Benjamin K. Johnson, Hui Shen, Jacob Morrison

Cell division drives DNA methylation loss in late-replicating domains in primary human cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.14.485664

N/A

0DataRank · unranked

4 citations

Paula A. Nolte, Hui Shen, Peter W. Laird, Jamie L. Endicott

Evaluation of whole-genome DNA methylation sequencing library preparation protocols

Epigenetics & Chromatin(2021)10.1186/s13072-021-00401-y

N/A

0DataRank · unranked

96 citations

Julie Koeman, Benjamin K. Johnson, Kelly K. Foy, Ian Beddows, Wanding Zhou +6 more

Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

UNC Libraries(2020)10.17615/s3ab-0w32

N/A

0DataRank · unranked

0 citations

Gordon B. Mills, Nilsa C. Ramirez, Andrew J. Mungall, Hailei Zhang, Nikolaus Schultz +95 more

Hui Shen

Indexed papers

Top data-sharing exemplar

Papers