Marc A. Suchard

United States Department of Veterans Affairs

Also affiliated with University of California, Los Angeles

MathematicsMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

16.4Author DataRank

Indexed papers

15in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 15 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study

Nature Communications(2020)10.1038/s41467-020-18849-z

Top 7%

3.3DataRank

Top 7%107 citations

Seng Chan You, Anthony G. Sena, Kristin Kostka, Hamed Abedtash, Maria Tereza Fernandes Abrahão +64 more

Papers

Driven by 174 papers — median percentile 75. Top paper: “Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations”.

Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations

Nature Methods(2023)10.1038/s41592-023-01769-3

N/A

12.1DataRank · unranked

381 citations

Alaa Abdel Latif, Julia L. Mullen, Manar Alkuzweny, Emory Hufbauer, Ginger Tsueng +20 more

Safety of hydroxychloroquine, alone and in combination with azithromycin, in light of rapid wide-spread use for COVID-19: a multinational, network cohort and self-controlled case series study

medRxiv(2020)10.1101/2020.04.08.20054551

N/A

6.4DataRank · unranked

133 citations

James Weaver, Kristin Kostka, Talita Duarte‐Salles, Maria Tereza Fernandes Abrahão, Heba Alghoul +56 more

Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study

Nature Communications(2020)10.1038/s41467-020-18849-z

Top 7%

3.3DataRank

Top 7%107 citations

Seng Chan You, Anthony G. Sena, Kristin Kostka, Hamed Abedtash, Maria Tereza Fernandes Abrahão +64 more

Deep phenotyping of 34,128 patients hospitalised with COVID-19 and a comparison with 81,596 influenza patients in America, Europe and Asia: an international network study

medRxiv(2020)10.1101/2020.04.22.20074336

Top 9%

2.5DataRank

Top 9%48 citations

Seng Chan You, Anthony G. Sena, Kristin Kostka, Hamed Abedtash, Maria Tereza Fernandes Abrahão +64 more

Use of repurposed and adjuvant drugs in hospital patients with covid-19: multinational network cohort study

BMJ(2021)10.1136/bmj.n1038

Top 10%

2.2DataRank

Top 10%71 citations

Anthony G. Sena, Lana Yin Hui Lai, Waheed‐Ul‐Rahman Ahmed, Heba Alghoul, Osaid Alser +38 more

Farmed fur animals harbour viruses with zoonotic spillover potential

Nature(2024)10.1038/s41586-024-07901-3

N/A

2.0DataRank · unranked

89 citations

Wenbo Wan, Yu Kang, Philippe Lemey, John H.‐O. Pettersson, Yuhai Bi +15 more

Thirty-Day Outcomes of Children and Adolescents With COVID-19: An International Experience

PEDIATRICS(2021)10.1542/peds.2020-042929

Top 11%

1.9DataRank

Top 11%49 citations

David Vizcaya, Andrea Pistillo, Paula Casajust, Anthony G. Sena, Lana Yin Hui Lai +37 more

Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI

Yearbook of Medical Informatics(2021)10.1055/s-0041-1726481

Top 14%

1.5DataRank

Top 14%46 citations

Martijn J. Schuemie, David Madigan, Patrick Ryan, Marc A. Suchard, George Hripcsak

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Systematic Biology(2018)10.1093/sysbio/syy032

N/A

1.4DataRank · unranked

11020 citations

Alexei J. Drummond, Dong Xie, Guy Baele, Marc A. Suchard, Andrew Rambaut

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

Molecular Biology and Evolution(2012)10.1093/molbev/mss075

N/A

1.4DataRank · unranked

10366 citations

Marc A. Suchard, Dong Xie, Andrew Rambaut, Alexei J. Drummond

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

PLoS Computational Biology(2014)10.1371/journal.pcbi.1003537

N/A

1.3DataRank · unranked

6924 citations

Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh-Hsi Wu, Dong Xie +5 more

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Science(2023)10.1126/science.adg6605

N/A

1.3DataRank · unranked

70 citations

John T. McCrone, Ben Lambert, Sumali Bajaj, Rhys Inward, Paolo Bosetti +35 more

Risk of depression, suicide and psychosis with hydroxychloroquine treatment for rheumatoid arthritis: a multinational network cohort study

Lara D. Veeken(2020)10.1093/rheumatology/keaa771

N/A

1.1DataRank · unranked

47 citations

James Weaver, Kristin Kostka, Talita Duarte‐Salles, Maria Tereza Fernandes Abrahão, Heba Alghoul +43 more

Contextualising adverse events of special interest to characterise the baseline incidence rates in 24 million patients with COVID-19 across 26 databases: a multinational retrospective cohort study

eClinicalMedicine(2023)10.1016/j.eclinm.2023.101932

N/A

1.1DataRank · unranked

27 citations

Azza Shoaibi, Lana Yin Hui Lai, Clair Blacketer, Thamir Alshammari, Rupa Makadia +73 more

Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST

Systematic Biology(2020)10.1093/sysbio/syaa037

N/A

1.0DataRank · unranked

21 citations

Mandev S. Gill, Paul Bastide, Philippe Lemey, Marc A. Suchard, Guy Baele

COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives

Trends in Molecular Medicine(2020)10.1016/j.molmed.2020.02.008

N/A

0.987DataRank · unranked

720 citations

Wan-Ting He, Lifang Wang, Alexander Lai, Xiang Ji, Xiaofeng Zhai +7 more

BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference

Nature Methods(2025)10.1038/s41592-025-02751-x

N/A

0.960DataRank · unranked

72 citations

Xiang Ji, Gabriel W. Hassler, John T. McCrone, Yucai Shao, Zhenyu Zhang +6 more

Unraveling COVID-19: A Large-Scale Characterization of 4.5 Million COVID-19 Cases Using CHARYBDIS

Clinical Epidemiology(2022)10.2147/clep.s323292

Top 22%

0.935DataRank

Top 22%26 citations

Talita Duarte‐Salles, Albert Prats‐Uribe, Anthony G. Sena, Andrea Pistillo, Sara Khalid +70 more

Large-scale evidence generation and evaluation across a network of databases for type 2 diabetes mellitus (LEGEND-T2DM): a protocol for a series of multinational, real-world comparative cardiovascular effectiveness and safety studies

BMJ Open(2022)10.1136/bmjopen-2021-057977

Top 22%

0.918DataRank

Top 22%40 citations

Martijn J. Schuemie, Yuan Lu, Anna Ostropolets, Ruijun Chen, George Hripcsak +4 more

The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic

Science(2022)10.1126/science.abp8715

N/A

0.913DataRank · unranked

439 citations

Joshua I. Levy, Lorena M. Malpica Serrano, Alexander Crits‐Christoph, Jonathan E. Pekar, Stephen A. Goldstein +13 more

Characteristics and outcomes of patients with COVID-19 with and without prevalent hypertension: a multinational cohort study

BMJ Open(2021)10.1136/bmjopen-2021-057632

Top 25%

0.809DataRank

Top 25%15 citations

Andrea Pistillo, Sergio Fernández‐Bertolín, Martina Recalde, Elena Roel, Diana Puente +33 more

Implementation of the COVID-19 Vulnerability Index Across an International Network of Health Care Data Sets: Collaborative External Validation Study

JMIR Medical Informatics(2021)10.2196/21547

N/A

0.796DataRank · unranked

26 citations

Chungsoo Kim, Ross D. Williams, Aniek F. Markus, Cynthia Yang, Talita Duarte‐Salles +32 more

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

Nature Communications(2020)10.1038/s41467-020-18877-9

N/A

0.784DataRank · unranked

185 citations

Samuel L. Hong, Verity Hill, Guy Baele, Chiara Poletto, Vittoria Colizza +8 more

Baseline phenotype and 30-day outcomes of people tested for COVID-19: an international network cohort including >3.32 million people tested with real-time PCR and >219,000 tested positive for SARS-CoV-2 in South Korea, Spain and the United States

medRxiv(2020)10.1101/2020.10.25.20218875

N/A

0.776DataRank · unranked

11 citations

Lana Yin Hui Lai, Anthony G. Sena, David Vizcaya, Lisa M. Schilling, Vojtech Huser +48 more

Risk of hydroxychloroquine alone and in combination with azithromycin in the treatment of rheumatoid arthritis: a multinational, retrospective study

The Lancet Rheumatology(2020)10.1016/s2665-9913(20)30276-9

N/A

0.756DataRank · unranked

153 citations

James Weaver, Kristin Kostka, Talita Duarte‐Salles, Maria Tereza Fernandes Abrahão, Heba Alghoul +57 more

Gradients Do Grow on Trees: A Linear-TimeO(N)-Dimensional Gradient for Statistical Phylogenetics

Molecular Biology and Evolution(2020)10.1093/molbev/msaa130

N/A

0.736DataRank · unranked

43 citations

Zhenyu Zhang, Andrew J. Holbrook, Akihiko Nishimura, Guy Baele, Andrew Rambaut +3 more

Renin–angiotensin system blockers and susceptibility to COVID-19: an international, open science, cohort analysis

The Lancet Digital Health(2020)10.1016/s2589-7500(20)30289-2

N/A

0.731DataRank · unranked

130 citations

Mitchell M. Conover, Seng Chan You, Nicole Pratt, Kristin Kostka, Talita Duarte‐Salles +28 more

Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

medRxiv(2021)10.1101/2021.02.06.21251159

N/A

0.701DataRank · unranked

106 citations

Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T. Cirulli, Kelly M. Schiabor Barrett +48 more

Multinational patterns of second line antihyperglycaemic drug initiation across cardiovascular risk groups: federated pharmacoepidemiological evaluation in LEGEND-T2DM

BMJ Medicine(2023)10.1136/bmjmed-2023-000651

Top 29%

0.692DataRank

Top 29%28 citations

Lovedeep Singh Dhingra, Arya Aminorroaya, Kelly Li, Jin Zhou, Faaizah Arshad +42 more

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2007295117

N/A

0.665DataRank · unranked

83 citations

Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour +31 more

Assessing the role of live poultry trade in community-structured transmission of avian influenza in China

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1906954117

N/A

0.637DataRank · unranked

69 citations

Xiang Zhao, Philippe Lemey, Marc A. Suchard, Yuhai Bi, Weifeng Shi +7 more

Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic

Nature Communications(2022)10.1038/s41467-022-29614-9

N/A

0.626DataRank · unranked

64 citations

Bram Vrancken, Matthias Budt, Ariane Düx, Sébastian Lequime, Şengül Boral +21 more

Data Integration in Bayesian Phylogenetics

Annual Review of Statistics and Its Application(2022)10.1146/annurev-statistics-033021-112532

N/A

0.625DataRank · unranked

18 citations

Andrew F. Magee, Zhenyu Zhang, Guy Baele, Philippe Lemey, Xiang Ji +3 more

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008837

N/A

0.624DataRank · unranked

63 citations

Di Xiong, Lu Zhang, Joseph A. Zoller, John Shamshoian, Phillip Sundin +5 more

Serially Combining Epidemiological Designs Does Not Improve Overall Signal Detection in Vaccine Safety Surveillance

Drug Safety(2023)10.1007/s40264-023-01324-1

N/A

0.606DataRank · unranked

6 citations

Martijn J. Schuemie, Fan Bu, Evan Minty, Thamir M. Alshammari, Lana Yin Hui Lai +8 more

COVID-19 in patients with autoimmune diseases: characteristics and outcomes in a multinational network of cohorts across three countries

Lara D. Veeken(2021)10.1093/rheumatology/keab250

N/A

0.598DataRank · unranked

53 citations

Anthony G. Sena, Albert Prats‐Uribe, Seng Chan You, Waheed‐Ul‐Rahman Ahmed, Kristin Kostka +41 more

Characteristics and Outcomes of Over 300,000 Patients with COVID-19 and History of Cancer in the United States and Spain

Cancer Epidemiology Biomarkers & Prevention(2021)10.1158/1055-9965.epi-21-0266

Top 34%

0.576DataRank

Top 34%10 citations

Andrea Pistillo, Martina Recalde, Anthony G. Sena, Sergio Fernández‐Bertolín, María Aragón +48 more

Comparative Effectiveness of Second-Line Antihyperglycemic Agents for Cardiovascular Outcomes

Journal of the American College of Cardiology(2024)10.1016/j.jacc.2024.05.069

N/A

0.557DataRank · unranked

40 citations

Arya Aminorroaya, Lovedeep Singh Dhingra, Phyllis Thangaraj, Aline Pedroso Camargos, Fan Bu +49 more

SPREAD 4: online visualisation of pathogen phylogeographic reconstructions

Virus Evolution(2022)10.1093/ve/veac088

N/A

0.546DataRank · unranked

37 citations

Filip Bielejec, Juan Monetta, Simon Dellicour, Andrew Rambaut, Marc A. Suchard +3 more

Baseline characteristics, management, and outcomes of 55,270 children and adolescents diagnosed with COVID-19 and 1,952,693 with influenza in France, Germany, Spain, South Korea and the United States: an international network cohort study

medRxiv(2020)10.1101/2020.10.29.20222083

N/A

0.529DataRank · unranked

33 citations

David Vizcaya, Andrea Pistillo, Paula Casajust, Anthony G. Sena, Lana Yin Hui Lai +37 more

Objective study validity diagnostics: a framework requiring pre-specified, empirical verification to increase trust in the reliability of real-world evidence

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocae317

N/A

0.513DataRank · unranked

14 citations

Patrick Ryan, Yong Chen, Marc A. Suchard, George Hripcsak, Martijn J. Schuemie +1 more

Estimating effective population size changes from preferentially sampled genetic sequences

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007774

N/A

0.505DataRank · unranked

28 citations

Luiz Max Carvalho, Marc A. Suchard, Gytis Dudas, Vladimir N. Minin, Michael D. Karcher

Renin-angiotensin system blockers and susceptibility to COVID-19: a multinational open science cohort study

medRxiv(2020)10.1101/2020.06.11.20125849

N/A

0.500DataRank · unranked

27 citations

Mitchell M. Conover, Seng Chan You, Nicole Pratt, Kristin Kostka, Talita Duarte‐Salles +28 more

Macroevolutionary dynamics of climatic niche space

Proceedings of the Royal Society B Biological Sciences(2022)10.1098/rspb.2022.0091

N/A

0.479DataRank · unranked

12 citations

Marc A. Suchard, Walter Jetz, Ignacio Quintero

Principled, practical, flexible, fast: A new approach to phylogenetic factor analysis

Methods in Ecology and Evolution(2022)10.1111/2041-210x.13920

N/A

0.470DataRank · unranked

22 citations

Brigida Gallone, Leandro Arístide, William L. Allen, Max R. Tolkoff, Andrew J. Holbrook +4 more

Similar Risk of Kidney Failure among Patients with Blinding Diseases Who Receive Ranibizumab, Aflibercept, and Bevacizumab

Ophthalmology Retina(2024)10.1016/j.oret.2024.03.014

N/A

0.434DataRank · unranked

17 citations

Akihiko Nishimura, Mary G. Bowring, Erik Westlund, Diep Tran, Jia Hwei Ng +32 more

Risk of Thyroid Tumors With GLP-1 Receptor Agonists: A Retrospective Cohort Study

Diabetes Care(2025)10.2337/dc25-0154

N/A

0.434DataRank · unranked

17 citations

Fan Bu, Benjamin Viernes, Scott L. DuVall, Michael E. Matheny, Katherine Simon +26 more

A scalable surrogate L0 sparse regression method for generalized linear models with applications to large scale data

Journal of Statistical Planning and Inference(2020)10.1016/j.jspi.2020.12.001

N/A

0.406DataRank · unranked

14 citations

Xiaoling Peng, Eric S. Kawaguchi, Marc A. Suchard, Gang Li, Ning Li

Massive Parallelization of Massive Sample-Size Survival Analysis

Journal of Computational and Graphical Statistics(2023)10.1080/10618600.2023.2213279

N/A

0.390DataRank · unranked

5 citations

Martijn J. Schuemie, Xiang Ji, Marc A. Suchard, Jianxiao Yang

Persistence on Novel Cardioprotective Antihyperglycemic Therapies in the United States

The American Journal of Cardiology(2023)10.1016/j.amjcard.2023.03.002

N/A

0.385DataRank · unranked

12 citations

Callahan Clark, Arya Aminorroaya, Lian Chen, Mengni Liu, Abraham Reddy +8 more

Characteristics and outcomes of COVID-19 patients with COPD from the United States, South Korea, and Europe

Wellcome Open Research(2022)10.12688/wellcomeopenres.17403.1

Top 48%

0.370DataRank

Top 48%5 citations

Katia Verhamme, Anna Ostropolets, Kristin Kostka, Talita Duarte-Sales, Daniel Prieto‐Alhambra +19 more

Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations

Systematic Biology(2024)10.1093/sysbio/syae019

N/A

0.345DataRank · unranked

9 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Frederick A. Matsen, Guy Baele +5 more

Characteristics and outcomes of COVID-19 patients with COPD from the United States, South Korea, and Europe

Wellcome Open Research(2023)10.12688/wellcomeopenres.17403.3

Top 51%

0.343DataRank

Top 51%4 citations

Katia Verhamme, Anna Ostropolets, Kristin Kostka, Talita Duarte-Sales, Daniel Prieto‐Alhambra +19 more

Standardized patient profile review using large language models for case adjudication in observational research

npj Digital Medicine(2025)10.1038/s41746-025-01433-4

N/A

0.330DataRank · unranked

8 citations

Anna Ostropolets, Aleh Zhuk, Uladzislau Korsik, Seung In Seo, Marc A. Suchard +3 more

Assessing Covariate Balance With Small Sample Sizes

Statistics in Medicine(2025)10.1002/sim.70212

N/A

0.312DataRank · unranked

7 citations

Linying Zhang, Yong Chen, Kelly Li, Marc A. Suchard, Patrick Ryan +2 more

Risk of aortic aneurysm or dissection following use of fluoroquinolones: a retrospective multinational network cohort study

EClinicalMedicine(2025)10.1016/j.eclinm.2025.103096

N/A

0.292DataRank · unranked

6 citations

Jung Ho Kim, Evan Minty, Jung Ah Lee, Daniel R. Morales, Rohan Khera +22 more

Assessing Covariate Balance with Small Sample Sizes

medRxiv(2024)10.1101/2024.04.23.24306230

N/A

0.292DataRank · unranked

6 citations

Linying Zhang, Yong Chen, Kelly Li, Marc A. Suchard, Patrick Ryan +2 more

International importance and spread of SARS-CoV-2 variants Alpha, Delta, and Omicron BA.1 into Spain

Communications Medicine(2025)10.1038/s43856-025-00912-9

N/A

0.241DataRank · unranked

4 citations

Samuel L. Hong, Nena Bollen, Simon Dellicour, Guy Baele, Marc A. Suchard +3 more

Bias, precision and timeliness of historical (background) rate comparison methods for vaccine safety monitoring: an empirical multi-database analysis

medRxiv(2021)10.1101/2021.07.10.21258463

N/A

0.241DataRank · unranked

4 citations

Lana Yin Hui Lai, Anna Ostropolets, Faaizah Arshad, Eng Hooi Tan, Paula Casajust +11 more

Comparative Effectiveness of Second-line Antihyperglycemic Agents for Cardiovascular Outcomes: A Large-scale, Multinational, Federated Analysis of the LEGEND-T2DM Study

medRxiv(2024)10.1101/2024.02.05.24302354

N/A

0.241DataRank · unranked

4 citations

Arya Aminorroaya, Lovedeep Singh Dhingra, Phyllis Thangaraj, Aline Pedroso Camargos, Fan Bu +49 more

Dispersal history of SARS‐CoV‐2 in Galicia, Spain

Journal of Medical Virology(2024)10.1002/jmv.29773

N/A

0.241DataRank · unranked

4 citations

Nuria Estévez‐Gómez, Loretta De Chiara, Pilar Alvariño, Pedro Miguel Juiz-González, Isabel Torres‐Beceiro +46 more

Unlocking efficiency in real-world collaborative studies: a multi-site international study with one-shot lossless GLMM algorithm

npj Digital Medicine(2025)10.1038/s41746-025-01846-1

N/A

0.241DataRank · unranked

4 citations

Jenna Reps, Chongliang Luo, Yiwen Lu, Lu Li, Juan Manuel Ramírez‐Anguita +20 more

Multinational Patterns of Second-line Anti-hyperglycemic Drug Initiation Across Cardiovascular Risk Groups: A Federated Pharmacoepidemiologic Evaluation in LEGEND-T2DM

medRxiv(2022)10.1101/2022.12.27.22283968

Top 65%

0.208DataRank

Top 65%3 citations

Lovedeep Singh Dhingra, Arya Aminorroaya, Kelly Li, Jin Zhou, Faaizah Arshad +42 more

Characteristics and outcomes of COVID-19 patients with COPD from the United States, South Korea, and Europe

Wellcome Open Research(2022)10.12688/wellcomeopenres.17403.2

Top 65%

0.193DataRank

Top 65%2 citations

Katia Verhamme, Anna Ostropolets, Kristin Kostka, Talita Duarte-Sales, Daniel Prieto‐Alhambra +19 more

Alpha-1 blockers and susceptibility to COVID-19 in benign prostate hyperplasia patients : an international cohort study

medRxiv(2021)10.1101/2021.03.18.21253778

N/A

0.179DataRank · unranked

2 citations

Junqing Xie, Kristin Kostka, Talita Duarte‐Salles, Sergio Fernández‐Bertolín, María Aragón +21 more

Comparative Safety of Second-Line Antihyperglycemic Agents in Older Adults with Type 2 Diabetes: A Multinational Real-World Evidence From LEGEND-T2DM

medRxiv(2025)10.1101/2025.05.08.25327248

N/A

0.165DataRank · unranked

2 citations

Fan Bu, Clair Blacketer, Anna Ostropolets, Talita Duarte‐Salles, Benjamin Viernes +29 more

Risk of depression, suicidal ideation, suicide and psychosis with hydroxychloroquine treatment for rheumatoid arthritis: a multi-national network cohort study

medRxiv(2020)10.1101/2020.07.17.20156059

N/A

0.165DataRank · unranked

2 citations

James Weaver, Kristin Kostka, Talita Duarte‐Salles, Maria Tereza Fernandes Abrahão, Heba Alghoul +43 more

Combining cox regressions across a heterogeneous distributed research network facing small and zero counts

Statistical Methods in Medical Research(2021)10.1177/09622802211060518

N/A

0.165DataRank · unranked

2 citations

Yong Chen, David Madigan, Marc A. Suchard, Martijn J. Schuemie

Variational Bayesian Phylogenetic Inference with Semi-implicit Branch Length Distributions

arXiv (Cornell University)(2024)10.48550/arxiv.2408.05058

N/A

0.104DataRank · unranked

1 citations

Frederick A. Matsen, Marc A. Suchard, Cheng Zhang, Tianyu Xie

From viral evolution to spatial contagion: a biologically modulated Hawkes model

Bioinformatics(2022)10.1093/bioinformatics/btac027

N/A

0.104DataRank · unranked

1 citations

Xiang Ji, Marc A. Suchard, Andrew J. Holbrook

Relaxed Random Walks at Scale

Systematic Biology(2020)10.1093/sysbio/syaa056

N/A

0.104DataRank · unranked

1 citations

Xiang Ji, Zhenyu Zhang, Philippe Lemey, Marc A. Suchard, Alexander A. Fisher

Zoonotic infections by avian influenza virus: changing global epidemiology, investigation, and control

The Lancet Infectious Diseases(2024)10.1016/s1473-3099(24)00234-2

N/A

0DataRank · unranked

62 citations

Lifang Wang, Bowen Sun, Wenbo Wan, Xiang Ji, Guy Baele +14 more

Health-Analytics Data to Evidence Suite (HADES): Open-Source Software for Observational Research

Studies in health technology and informatics(2024)10.3233/shti231108

N/A

0DataRank · unranked

25 citations

Jenna Reps, Adam Black, Frank DeFalco, Lee Evans, Egill A. Friðgeirsson +11 more

How fast are viruses spreading in the wild?

PLoS Biology(2024)10.1371/journal.pbio.3002914

N/A

0DataRank · unranked

22 citations

Paul Bastide, Pauline Rocu, Denis Fargette, Olivier J. Hardy, Marc A. Suchard +3 more

Toward optimal disease surveillance with graph-based active learning

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2412424121

N/A

0DataRank · unranked

7 citations

Mengyan Zhang, Prathyush Sambaturu, Simon Busch‐Moreno, Marc A. Suchard, Oliver Pybus +4 more

Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011640

N/A

0DataRank · unranked

5 citations

Andrew F. Magee, Tetyana I. Vasylyeva, Marc A. Suchard, Yucai Shao

Many-core algorithms for high-dimensional gradients on phylogenetic trees

Bioinformatics(2024)10.1093/bioinformatics/btae030

N/A

0DataRank · unranked

8 citations

Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen +2 more

On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2318989121

N/A

0DataRank · unranked

6 citations

Nathan Glatt-Holtz, Andrew J. Holbrook, Andrew F. Magee, Marc A. Suchard, Gustavo Didier

Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation

PNAS Nexus(2024)10.1093/pnasnexus/pgae561

N/A

0DataRank · unranked

4 citations

Emanuele Gustani‐Buss, Trevor Bedford, Marc A. Suchard, Nídia S. Trovão, Andrew Rambaut +4 more

Phylogenetic Tree Instability After Taxon Addition: Empirical Frequency, Predictability, and Consequences For Online Inference

Systematic Biology(2024)10.1093/sysbio/syae059

N/A

0DataRank · unranked

1 citations

Mary Barker, Marc A. Suchard, Frederick A. Matsen, Lena Collienne

Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature

BMC Infectious Diseases(2024)10.1186/s12879-024-09967-w

N/A

0DataRank · unranked

2 citations

Johan Van Weyenbergh, Samuel L. Hong, Lize Cuypers, Áine O’Toole, Gytis Dudas +37 more

Comparative safety and effectiveness of angiotensin converting enzyme inhibitors and thiazides and thiazide‐like diuretics under strict monotherapy

Journal of Clinical Hypertension(2024)10.1111/jch.14793

N/A

0DataRank · unranked

2 citations

Fan Bu, Martijn J. Schuemie, Marc A. Suchard, George Hripcsak, Tara V. Anand

Zigzag Path Connects Two Monte Carlo Samplers: Hamiltonian Counterpart to a Piecewise Deterministic Markov Process

Journal of the American Statistical Association(2024)10.1080/01621459.2024.2395587

N/A

0DataRank · unranked

1 citations

Zhenyu Zhang, Marc A. Suchard, Akihiko Nishimura

How fast are viruses spreading in the wild?

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.10.588821

N/A

0DataRank · unranked

6 citations

Paul Bastide, Pauline Rocu, Denis Fargette, Olivier J. Hardy, Marc A. Suchard +3 more

Dispersal history of SARS-CoV-2 in Galicia, Spain

medRxiv(2024)10.1101/2024.02.27.24303385

N/A

0DataRank · unranked

1 citations

Nuria Estévez‐Gómez, Loretta De Chiara, Pilar Alvariño, Pedro Miguel Juiz-González, Isabel Torres‐Beceiro +46 more

Evaluating the impact of instrumental variables in propensity score models using synthetic and negative control experiments

arXiv (Cornell University)(2024)10.48550/arxiv.2403.14563

N/A

0DataRank · unranked

0 citations

Nicole Pratt, Laura Hester, George Hripcsak, Martijn J. Schuemie, Marc A. Suchard +1 more

Torchtree: flexible phylogenetic model development and inference using PyTorch

arXiv (Cornell University)(2024)10.48550/arxiv.2406.18044

N/A

0DataRank · unranked

0 citations

Matthew Macaulay, Christiaan Swanepoel, Xiang Ji, Marc A. Suchard, Frederick A. Matsen +1 more

Scaling Hawkes processes to one million COVID-19 cases

arXiv (Cornell University)(2024)10.48550/arxiv.2407.11349

N/A

0DataRank · unranked

0 citations

Marc A. Suchard, Andrew J. Holbrook, Seokbum Ko

Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation

arXiv (Cornell University)(2024)10.48550/arxiv.2412.06042

N/A

0DataRank · unranked

0 citations

Guy Baele, Marc A. Suchard, Philippe Lemey, Mandev S. Gill

Artificial intelligence for modelling infectious disease epidemics

Nature(2025)10.1038/s41586-024-08564-w

N/A

0DataRank · unranked

133 citations

Joseph L.-H. Tsui, Serina Chang, Spyros Lytras, Mark P. Khurana, Samantha Vanderslott +36 more

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

Cell(2025)10.1016/j.cell.2025.03.035

N/A

0DataRank · unranked

24 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Yu Wang +14 more

HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X

Bioinformatics(2025)10.1093/bioinformatics/btaf488

N/A

0DataRank · unranked

14 citations

Luiz Max Carvalho, Marius Brusselmans, Gytis Dudas, Xiang Ji, John T. McCrone +4 more

Recent advances in the inference of deep viral evolutionary history

Journal of Virology(2025)10.1128/jvi.00292-25

N/A

0DataRank · unranked

6 citations

Marc A. Suchard, Edward C. Holmes, Philippe Lemey, Jonathon C. O. Mifsud

Computational Phenomapping of Randomized Clinical Trial Participants to Enable Assessment of Their Real-World Representativeness and Personalized Inference

Circulation Cardiovascular Quality and Outcomes(2025)10.1161/circoutcomes.124.011306

N/A

0DataRank · unranked

3 citations

Evangelos K. Oikonomou, Lovedeep Singh Dhingra, Arya Aminorroaya, Rahul Jayaram, Marc A. Suchard +2 more

Diel activity correlates with colour pattern morphology of heterobranch sea slugs

Journal of Animal Ecology(2025)10.1111/1365-2656.70036

N/A

0DataRank · unranked

4 citations

Gabriel W. Hassler, Simon P. Blomberg, Nerida G. Wilson, Marc A. Suchard, Karen L. Cheney +1 more

Finding high posterior density phylogenies by systematically extending a directed acyclic graph

Algorithms for Molecular Biology(2025)10.1186/s13015-025-00273-x

N/A

0DataRank · unranked

2 citations

David H Rich, Matthew Macaulay, Michael D. Karcher, Tanvi Ganapathy, Shosuke Kiami +5 more

torchtree : Flexible Phylogenetic Model Development and Inference Using PyTorch

Systematic Biology(2025)10.1093/sysbio/syaf047

N/A

0DataRank · unranked

1 citations

Matthew Macaulay, Christiaan Swanepoel, Xiang Ji, Marc A. Suchard, Frederick A. Matsen +1 more

Biological causes and impacts of rugged tree landscapes in phylodynamic inference

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.10.657742

N/A

0DataRank · unranked

4 citations

Marius Brusselmans, Luiz Mariano Carvalho, Marc A. Suchard, Guy Baele, Frederick A. Matsen +1 more

Evidence of latency reshapes our understanding of Ebola virus reservoir dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.17.683141

N/A

0DataRank · unranked

3 citations

Guy Baele, Ifeanyi F. Omah, Eddy Kinganda-Lusamaki, Joseph A. Brew, Luiz Max Carvalho +6 more

The Structure of Deviations From Maximum Parsimony for Densely-Sampled Data and Applications for Clade Support Estimation

IEEE Transactions on Computational Biology and Bioinformatics(2025)10.1109/tcbbio.2025.3595782

N/A

0DataRank · unranked

0 citations

Will Dumm, Mary Barker, Ognian Milanov, Claris Winston, David H Rich +3 more

Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation

Molecular Biology and Evolution(2025)10.1093/molbev/msaf199

N/A

0DataRank · unranked

0 citations

Guy Baele, Marc A. Suchard, Philippe Lemey, Mandev S. Gill

Transfer-learning on federated observational healthcare data for prediction models using Bayesian sparse logistic regression with informed priors

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocaf146

N/A

0DataRank · unranked

0 citations

Jenna Reps, Akihiko Nishimura, Martijn J. Schuemie, Marc A. Suchard, K. Li

Nonparametric Modeling of Continuous-Time Markov Chains

arXiv (Cornell University)(2025)10.48550/arxiv.2511.03954

N/A

0DataRank · unranked

0 citations

Xiang Ji, Marc A. Suchard, Monti, Filippo

RNA virus genomes from centuries- to millennia-old Adélie penguin mummies

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.17.693957

N/A

0DataRank · unranked

0 citations

Chris Lauber, Katharina J. Hoff, Jennifer Klunk, Madeline Tapson, Emilio Mármol‐Sánchez +5 more

Genomic Epidemiology, Evolution, and Transmission Dynamics of Porcine Deltacoronavirus

Molecular Biology and Evolution(2020)10.1093/molbev/msaa117

N/A

0DataRank · unranked

180 citations

Xiang Ji, Wei He, Simon Dellicour, Shilei Wang, Gairu Li +13 more

Measles virus and rinderpest virus divergence dated to the sixth century BCE

Science(2020)10.1126/science.aba9411

N/A

0DataRank · unranked

171 citations

Sébastian Lequime, Livia Victoria Patrono, Bram Vrancken, Şengül Boral, Jan F. Gogarten +16 more

The emergence of SARS-CoV-2 in Europe and North America

Science(2020)10.1126/science.abc8169

N/A

0DataRank · unranked

429 citations

Jonathan E. Pekar, Brendan B. Larsen, Martha I. Nelson, Verity Hill, Jeffrey B. Joy +5 more

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

Nature Communications(2020)10.1038/s41467-020-19122-z

N/A

0DataRank · unranked

128 citations

Sébastian Lequime, Bram Vrancken, Mandev S. Gill, Paul Bastide, Karthik Gangavarapu +12 more

Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework

Wellcome Open Research(2020)10.12688/wellcomeopenres.15770.1

N/A

0DataRank · unranked

32 citations

Mandev S. Gill, Philippe Lemey, Marc A. Suchard, Guy Baele

Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND)

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa103

N/A

0DataRank · unranked

51 citations

Patrick Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz +4 more

Pseudo-likelihood based logistic regression for estimating COVID-19 infection and case fatality rates by gender, race, and age in California

Epidemics(2020)10.1016/j.epidem.2020.100418

N/A

0DataRank · unranked

18 citations

Lu Zhang, Gregory L. Watson, Phillip Sundin, Teresa Bufford, Joseph A. Zoller +4 more

Scalable Algorithms for Large Competing Risks Data

Journal of Computational and Graphical Statistics(2020)10.1080/10618600.2020.1841650

N/A

0DataRank · unranked

12 citations

Jenny I. Shen, Marc A. Suchard, Gang Li, Eric S. Kawaguchi

Determinants of dengue virus dispersal in the Americas

Virus Evolution(2020)10.1093/ve/veaa074

N/A

0DataRank · unranked

12 citations

Nikita Sahadeo, Philippe Lemey, Albert J. Auguste, Marc A. Suchard, Andrew Rambaut +2 more

Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa124

N/A

0DataRank · unranked

34 citations

Patrick Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz +4 more

Massive Parallelization Boosts Big Bayesian Multidimensional Scaling

Journal of Computational and Graphical Statistics(2020)10.1080/10618600.2020.1754226

N/A

0DataRank · unranked

2 citations

Philippe Lemey, Guy Baele, Simon Dellicour, Dirk Brockmann, Andrew Rambaut +2 more

Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction

Molecular Biology and Evolution(2020)10.1093/molbev/msaa047

N/A

0DataRank · unranked

1 citations

Philippe Lemey, Marc A. Suchard, Andrew Rambaut, Guy Baele, Mandev S. Gill

Snapshot of the evolution and mutation patterns of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.04.187435

N/A

0DataRank · unranked

26 citations

Jiumeng Sun, Wanting He, Xiang Ji, Qi Gao, Xiaofeng Zhai +7 more

Implementation of the COVID-19 Vulnerability Index Across an International Network of Health Care Data Sets: Collaborative External Validation Study (Preprint)

(2020)10.2196/preprints.21547

N/A

0DataRank · unranked

0 citations

Chungsoo Kim, Ross D. Williams, Aniek F. Markus, Cynthia Yang, Talita Duarte‐Salles +32 more

Untangling introductions and persistence in COVID-19 resurgence in Europe

Nature(2021)10.1038/s41586-021-03754-2

N/A

0DataRank · unranked

213 citations

Nick Ruktanonchai, Samuel L. Hong, Vittoria Colizza, Chiara Poletto, Frederik Van den Broeck +12 more

Ebola Virus Transmission Initiated by Relapse of Systemic Ebola Virus Disease

New England Journal of Medicine(2021)10.1056/nejmoa2024670

N/A

0DataRank · unranked

105 citations

Catherine Pratt, Mbusa Mutafali-Ruffin, Matthias Pauthner, Faustin N. Bile, Antoine Nkuba-Ndaye +45 more

Relax, Keep Walking — A Practical Guide to Continuous Phylogeographic Inference with BEAST

Molecular Biology and Evolution(2021)10.1093/molbev/msab031

N/A

0DataRank · unranked

69 citations

Mandev S. Gill, Nuno R. Faria, Andrew Rambaut, Oliver Pybus, Marc A. Suchard +2 more

Emergence of an early SARS-CoV-2 epidemic in the United States

Cell(2021)10.1016/j.cell.2021.07.030

N/A

0DataRank · unranked

52 citations

Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose +47 more

A phenomapping-derived tool to personalize the selection of anatomical vs. functional testing in evaluating chest pain (ASSIST)

European Heart Journal(2021)10.1093/eurheartj/ehab223

N/A

0DataRank · unranked

45 citations

David van Dijk, Helen Parise, Marc A. Suchard, James A. de Lemos, Charalambos Antoniades +4 more

Bayesian Phylogeographic Analysis Incorporating Predictors and Individual Travel Histories in BEAST

Current Protocols(2021)10.1002/cpz1.98

N/A

0DataRank · unranked

27 citations

Philippe Lemey, Marc A. Suchard, Guy Baele, Samuel L. Hong

Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models

The Annals of Applied Statistics(2021)10.1214/20-aoas1394

N/A

0DataRank · unranked

22 citations

Akihiko Nishimura, Paul Bastide, Xiang Ji, Rebecca Payne, Philip Goulder +3 more

Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil

medRxiv(2021)10.1101/2021.02.26.21252554

N/A

0DataRank · unranked

206 citations

Thomas A. Mellan, Charles Whittaker, Ingra Morales Claro, Darlan da Silva Cândido, Swapnil Mishra +65 more

Global disparities in SARS-CoV-2 genomic surveillance

medRxiv(2021)10.1101/2021.08.21.21262393

N/A

0DataRank · unranked

124 citations

Elizaveta Semenova, Gytis Dudas, Gabriel W. Hassler, Chaney C. Kalinich, Moritz U. G. Kraemer +43 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

medRxiv(2021)10.1101/2021.12.14.21267606

N/A

0DataRank · unranked

17 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more

Emergence of an early SARS-CoV-2 epidemic in the United States

medRxiv(2021)10.1101/2021.02.05.21251235

N/A

0DataRank · unranked

10 citations

Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose +47 more

Predicting the evolution of Lassa Virus endemic area and population at risk over the next decades

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.22.461380

N/A

0DataRank · unranked

8 citations

Liana E. Kafetzopoulou, Wim Thiery, Gytis Dudas, Sophie Gryseels, Anjali Kotamarthi +20 more

Archival influenza virus genomes from Europe reveal genomic and phenotypic variability during the 1918 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.14.444134

N/A

0DataRank · unranked

7 citations

Bram Vrancken, Matthias Budt, Ariane Düx, Sébastian Lequime, Şengül Boral +22 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Research Square(2021)10.21203/rs.3.rs-1159614/v1

N/A

0DataRank · unranked

5 citations

John T. McCrone, Verity Hill, Sumali Bajaj, Rosario Evans-Pena, Ben Lambert +35 more

Scalable Bayesian inference for self-excitatory stochastic processes applied to big American gunfire data

Statistics and Computing(2021)10.1007/s11222-020-09980-4

N/A

0DataRank · unranked

0 citations

Charles Loeffler, Seth Flaxman, Marc A. Suchard, Andrew J. Holbrook

Characteristics and outcomes of 118,155 COVID-19 individuals with a history of cancer in the United States and Spain

medRxiv(2021)10.1101/2021.01.12.21249672

Top 100%

0DataRank

Top 100%0 citations

Andrea Pistillo, Martina Recalde, Anthony G. Sena, Sergio Fernández‐Bertolín, María Aragón +48 more

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

Science(2022)10.1126/science.abp8337

N/A

0DataRank · unranked

251 citations

Andrew F. Magee, Edyth Parker, Niema Moshiri, Katherine Izhikevich, Jennifer L. Havens +24 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Nature(2022)10.1038/s41586-022-05200-3

N/A

0DataRank · unranked

143 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more

Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades

Nature Communications(2022)10.1038/s41467-022-33112-3

N/A

0DataRank · unranked

94 citations

Liana E. Kafetzopoulou, Wim Thiery, Gytis Dudas, Sophie Gryseels, Anjali Kotamarthi +22 more

Individualising intensive systolic blood pressure reduction in hypertension using computational trial phenomaps and machine learning: a post-hoc analysis of randomised clinical trials

The Lancet Digital Health(2022)10.1016/s2589-7500(22)00170-4

N/A

0DataRank · unranked

68 citations

Erica S. Spatz, Marc A. Suchard, Rohan Khera, Evangelos Oikonomou

Early Genomic Surveillance and Phylogeographic Analysis of Getah Virus, a Reemerging Arbovirus, in Livestock in China

Journal of Virology(2022)10.1128/jvi.01091-22

N/A

0DataRank · unranked

39 citations

Simon Dellicour, Ziqing Yan, Michael Veit, Mandev S. Gill, Wanting He +6 more

Mathematical models to study the biology of pathogens and the infectious diseases they cause

iScience(2022)10.1016/j.isci.2022.104079

N/A

0DataRank · unranked

22 citations

Jonathan M. Monk, Saugat Poudel, Charles J. Norsigian, Anand V. Sastry, Chen Liao +15 more

Prior-Preconditioned Conjugate Gradient Method for Accelerated Gibbs Sampling in “Large n , Large p ” Bayesian Sparse Regression

Journal of the American Statistical Association(2022)10.1080/01621459.2022.2057859

N/A

0DataRank · unranked

21 citations

Marc A. Suchard, Akihiko Nishimura

Accommodating sampling location uncertainty in continuous phylogeography

Virus Evolution(2022)10.1093/ve/veac041

N/A

0DataRank · unranked

15 citations

Philippe Lemey, Marc A. Suchard, Marius Gilbert, Guy Baele, Simon Dellicour

The phylodynamics of SARS-CoV-2 during 2020 in Finland

Communications Medicine(2022)10.1038/s43856-022-00130-7

N/A

0DataRank · unranked

14 citations

Ravi Kant, Frederik Van den Broeck, Maija T. Suvanto, Hussein Alburkat, Jenni Virtanen +22 more

Regional connectivity drove bidirectional transmission of SARS-CoV-2 in the Middle East during travel restrictions

Nature Communications(2022)10.1038/s41467-022-32536-1

N/A

0DataRank · unranked

13 citations

Catelyn Anderson, Mark Zeller, Ahmad Tibi, Jennifer L. Havens, Geneviève Laroche +25 more

Shrinkage with Shrunken Shoulders: Gibbs Sampling Shrinkage Model Posteriors with Guaranteed Convergence Rates

Bayesian Analysis(2022)10.1214/22-ba1308

N/A

0DataRank · unranked

8 citations

Marc A. Suchard, Akihiko Nishimura

Patterns of Medication Use and Prescription Fills for Cardioprotective Anti-Hyperglycemic Agents in the United States

medRxiv(2022)10.1101/2022.01.31.22270187

N/A

0DataRank · unranked

4 citations

Callahan Clark, Lian Chen, Mengni Liu, Abraham Reddy, Samuel Amodeo +7 more

Regional connectivity drove bidirectional transmission of SARS-CoV-2 in the Middle East during travel restrictions

medRxiv(2022)10.1101/2022.01.27.22269922

N/A

0DataRank · unranked

3 citations

Catelyn Anderson, Mark Zeller, Ahmad Tibi, Jennifer L. Havens, Geneviève Laroche +25 more

Best of intent, worst of both worlds: why sequentially combining epidemiological designs does not improve signal detection in vaccine safety surveillance

medRxiv(2022)10.1101/2022.02.18.22271183

N/A

0DataRank · unranked

0 citations

Martijn J. Schuemie, Evan Minty, Thamir M. Alshammari, Lana Yin Hui Lai, Talita Duarte‐Salles +7 more

Computational Statistics and Data Science in the Twenty-first Century

arXiv (Cornell University)(2022)10.48550/arxiv.2204.05530

N/A

0DataRank · unranked

0 citations

Akihiko Nishimura, Xiang Ji, Marc A. Suchard, Andrew J. Holbrook

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

Science(2023)10.1126/science.adg8116

N/A

0DataRank · unranked

204 citations

Richard A. Neher, Nnaemeka Ndodo, Vítor Borges, Ben Gannon, João Paulo Gomes +16 more

Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer

Nature Communications(2023)10.1038/s41467-023-40706-y

N/A

0DataRank · unranked

69 citations

Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey +24 more

An explainable machine learning-based phenomapping strategy for adaptive predictive enrichment in randomized clinical trials

npj Digital Medicine(2023)10.1038/s41746-023-00963-z

N/A

0DataRank · unranked

42 citations

Phyllis Thangaraj, Deepak L. Bhatt, Joseph S. Ross, Lawrence H. Young, Harlan M. Krumholz +3 more

Newly identified lineages of porcine hemagglutinating encephalomyelitis virus exhibit respiratory phenotype

Virus Evolution(2023)10.1093/ve/vead051

N/A

0DataRank · unranked

18 citations

Dongyan Li, Guy Baele, Jin Zhao, Zhiwen Jiang, Xiang Ji +7 more

Ranitidine Use and Incident Cancer in a Multinational Cohort

JAMA Network Open(2023)10.1001/jamanetworkopen.2023.33495

N/A

0DataRank · unranked

18 citations

Seung In Seo, Thomas Falconer, Chen Yanover, Talita Duarte‐Salles, Sarah Seager +18 more

Shrinkage-based Random Local Clocks with Scalable Inference

Molecular Biology and Evolution(2023)10.1093/molbev/msad242

N/A

0DataRank · unranked

15 citations

Xiang Ji, Akihiko Nishimura, Guy Baele, Philippe Lemey, Marc A. Suchard +1 more

Scalable Bayesian Divergence Time Estimation With Ratio Transformations

Systematic Biology(2023)10.1093/sysbio/syad039

N/A

0DataRank · unranked

12 citations

Alexander A. Fisher, Shuo Su, Jeffrey L. Thorne, Barney Potter, Philippe Lemey +3 more

A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm

Algorithms for Molecular Biology(2023)10.1186/s13015-023-00235-1

N/A

0DataRank · unranked

8 citations

Hassan Nasif, Chris Jennings-Shaffer, David H Rich, Anna Kooperberg, Mathieu Fourment +4 more

Bayesian safety surveillance with adaptive bias correction

Statistics in Medicine(2023)10.1002/sim.9968

N/A

0DataRank · unranked

7 citations

Martijn J. Schuemie, Akihiko Nishimura, Louisa H. Smith, Kristin Kostka, Thomas Falconer +5 more

Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation

Genome Biology and Evolution(2023)10.1093/gbe/evad099

N/A

0DataRank · unranked

7 citations

Christiaan Swanepoel, Jared Galloway, Xiang Ji, Karthik Gangavarapu, Marc A. Suchard +2 more

Accelerating Bayesian inference of dependency between mixed-type biological traits

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011419

N/A

0DataRank · unranked

6 citations

Akihiko Nishimura, Nídia S. Trovão, Joshua L. Cherry, Andrew J. Holbrook, Xiang Ji +3 more

Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes

Journal of Biomedical Informatics(2023)10.1016/j.jbi.2023.104476

N/A

0DataRank · unranked

3 citations

Martijn J. Schuemie, Marc A. Suchard, Patrick Ryan, George Hripcsak, Charles A. Rohde +2 more

Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer

Research Square(2023)10.21203/rs.3.rs-2574993/v1

N/A

0DataRank · unranked

19 citations

Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey +24 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.13.557637

N/A

0DataRank · unranked

13 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +17 more

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548617

N/A

0DataRank · unranked

12 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Jennifer L. Havens +11 more

An explainable machine learning-based phenomapping strategy for adaptive predictive enrichment in randomized controlled trials

medRxiv(2023)10.1101/2023.06.18.23291542

N/A

0DataRank · unranked

3 citations

Phyllis Thangaraj, Deepak L. Bhatt, Joseph S. Ross, Lawrence H. Young, Harlan M. Krumholz +3 more

Many-core algorithms for high-dimensional gradients on phylogenetic trees

arXiv (Cornell University)(2023)10.48550/arxiv.2303.04390

N/A

0DataRank · unranked

0 citations

Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen +2 more

Random-effects substitution models for phylogenetics via scalable gradient approximations

arXiv (Cornell University)(2023)10.48550/arxiv.2303.13642

N/A

0DataRank · unranked

0 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Fredrick A. Matsen, Guy Baele +5 more

Bayesian Safety Surveillance with Adaptive Bias Correction

arXiv (Cornell University)(2023)10.48550/arxiv.2305.12034

N/A

0DataRank · unranked

0 citations

Martijn J. Schuemie, Akihiko Nishimura, Louisa H. Smith, Kristin Kostka, Thomas Falconer +5 more

Quantitative bias analysis for outcome phenotype error correction in comparative effect estimation: an empirical and synthetic evaluation

arXiv (Cornell University)(2023)10.48550/arxiv.2305.15524

N/A

0DataRank · unranked

0 citations

Patrick Ryan, Victoria Y. Strauss, Marc A. Suchard, Joel N. Swerdel, Daniel Prieto‐Alhambra +1 more

Efficient GPU-accelerated fitting of observational health-scaled stratified and time-varying Cox models

arXiv (Cornell University)(2023)10.48550/arxiv.2310.16238

N/A

0DataRank · unranked

0 citations

Martijn J. Schuemie, Marc A. Suchard, Jianxiao Yang

Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.31.564882

N/A

0DataRank · unranked

0 citations

Andrew F. Magee, Tetyana I. Vasylyeva, Marc A. Suchard, Yucai Shao

Quantum Speedups for Multiproposal MCMC

arXiv (Cornell University)(2023)10.48550/arxiv.2312.01402

N/A

0DataRank · unranked

0 citations

Kuo-Chin Chen, Philippe Lemey, Marc A. Suchard, Andrew J. Holbrook, Min-Hsiu Hsieh +1 more

COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses

Science(2024)10.1126/science.adq3003

N/A

0DataRank · unranked

101 citations

Joseph L.-H. Tsui, Bernardo Gutiérrez, Simón Busch Moreno, Louis du Plessis, Xiaowei Deng +8 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

Cell(2024)10.1016/j.cell.2024.08.010

N/A

0DataRank · unranked

89 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +18 more

Marc A. Suchard

Indexed papers

Top data-sharing exemplar

Papers