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Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations

Systematic Biology(2024)10.1093/sysbio/syae019Source: DataRank Database

Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations is a research paper published in Systematic Biology (2024). On theSindex it has a DataRank of 0. It has been cited 8 times.

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Open Access8 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (15 grants)Impact (FWCI 1.48)OA: hybridTopics (61)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (10)

Andrew J. Holbrook ORCID,Jonathan E. Pekar ORCID,Itzue W. Caviedes-Solis ORCID,Frederick A. Matsen ORCID,Guy Baele ORCID

Live enrichment

PubMed:38712512 PMC:PMC11498053 OpenAlex:https://openalex.org/W4361303223

European Research Council

Grant: 725422-ReservoirDOCS

KU Leuven

Grant: C14/18/094

NIAID NIH HHS

Grant: K25 AI153816

NIAID NIH HHS

Grant: R01 AI162611

NLM NIH HHS

Grant: T15 LM011271

European Research Council

Grant: 725422

The evolutionary dynamics of pathogen emergence and establishment: from Reservoir Detection to Outbreak Control

National Institutes of Health

Grant: 5R01AI135992-02

Automation and Evaluation of Real-Time Transmission Network-Based HIV Prevention Services in New York City

National Institutes of Health

Grant: 5K25AI153816-04

Big Data Predictive Phylogenetics with Bayesian Learning

National Science Foundation

Grant: 2236854

CAREER: Data-Centric Evolutionary Contagion Models with Parallel and Quantum Parallel Computing

National Science Foundation

Grant: 2152774

Accelerating Bayesian Dimension Reduction for Dynamic Network Data with Many Observations

European Commission

Grant: 874850

MOnitoring Outbreak events for Disease surveillance in a data science context

National Institutes of Health

Grant: 2T15LM011271-11

San Diego Biomedical Informatics Education & Research (SABER)

National Institutes of Health

Grant: 5R01AI153044-04

Statistical innovation to integrate sequences and phenotypes for scalable phylodynamic inference

National Institutes of Health

Grant: 5R01AI162611-05

Fast and flexible Bayesian phylogenetics via modern machine learning

Howard Hughes Medical Institute

FWCI

1.48

Citation Percentile

0.8%

Citation Trend

2024

2025

2026

hybridLicense: cc-by

journalhttps://academic.oup.com/sysbio/advance-article-pdf/doi/10.1093/sysbio/syae019/57426601/syae019.pdf

publisherhttps://academic.oup.com/sysbio/advance-article-pdf/doi/10.1093/sysbio/syae019/57426601/syae019.pdf

publisherhttps://academic.oup.com/sysbio/advance-article-pdf/doi/10.1093/sysbio/syae019/57923096/syae019.pdf

publisherhttps://academic.oup.com/sysbio/article-pdf/73/3/562/60005102/syae019.pdf

journalhttps://doi.org/10.1093/sysbio/syae019

Fields of Study

Genomics and Phylogenetic StudiesEvolution and Paleontology StudiesGenetic diversity and population structure01 natural sciences0101 mathematics

MeSH Terms

Bayes TheoremMarkov ChainsPhylogenyModels, GeneticClassificationInfluenza A Virus, H3N2 SubtypeSARS-CoV-2

Keywords

Substitution (logic)BiologyPhylogeneticsScalabilityEvolutionary biologyStatistical physicsComputer sciencePhysicsGeneticsPhylogeographyBayesian inferenceHamiltonian Monte CarloSELECTIONFOS: Computer and information sciencesEvolutionEcology and Evolutionary BiologyStatistics - Computation3105 Genetics510Regular ManuscriptsGenetic0603 Evolutionary BiologyModelsInfluenza A VirusQuantitative Biology - Populations and Evolution3104 Evolutionary biologyPhylogenyComputation (stat.CO)0604 GeneticsScience & TechnologyEcologySEQUENCESModels, GeneticSARS-CoV-2Influenza A Virus, H3N2 Subtype3103 EcologyPopulations and Evolution (q-bio.PE)Bayes TheoremBiological SciencesClassificationMarkov Chains620TIMEInfectious DiseasesEmerging Infectious DiseasesFOS: Biological sciencesH3N2 SubtypeGeneric health relevanceLife Sciences & Biomedicine

Sustainable Development Goals

SDG 3: 3. Good health