Jason D. Buenrostro

Also affiliated with Harvard University, Harvard Stem Cell Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

11.5Author DataRank

Indexed papers

11in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 11 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A transcription factor atlas of directed differentiation

Cell(2023)10.1016/j.cell.2022.11.026

Top 6%

3.6DataRank

Top 6%232 citations

Sai Ma, Tristan Tay, Paul C. Kirchgatterer, Vanessa K. Verdine, Baolin Guo +14 more

Papers

Driven by 65 papers — median percentile 0. Top paper: “Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells”.

Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells

Nature(2020)10.1038/s41586-020-1935-3

N/A

7.5DataRank · unranked

295 citations

Sai Ma, Inbal Rachmin, Megan He, Pankaj Baral, Sekyu Choi +12 more

The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments

Nature Communications(2021)10.1038/s41467-021-22973-9

N/A

7.1DataRank · unranked

347 citations

Felix A. Radtke, Pierre Cunin, Giuseppina Stifano, Anaïs Levescot, Brinda Vijaykumar +85 more

Epigenetic memory of coronavirus infection in innate immune cells and their progenitors

Cell(2023)10.1016/j.cell.2023.07.019

N/A

6.0DataRank · unranked

280 citations

Arjun Ravishankar, Siddhartha Sharma, Christopher N. Parkhurst, Simon Grassmann, Claire Wingert +50 more

Corticosterone inhibits GAS6 to govern hair follicle stem-cell quiescence

Nature(2021)10.1038/s41586-021-03417-2

N/A

4.9DataRank · unranked

179 citations

Bing Zhang, Sai Ma, Meryem Gonzalez-Celeiro, Daniel Stein, Xin Jin +11 more

Chromatin potential identified by shared single cell profiling of RNA and chromatin

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.17.156943

N/A

4.7DataRank · unranked

125 citations

Bing Zhang, Zachary Chiang, Yan Hu, Jiarui Ding, Alison Brack +9 more

Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis

Cell Reports(2019)10.1016/j.celrep.2019.05.046

N/A

4.1DataRank · unranked

178 citations

Caleb A. Lareau, Erik L. Bao, Satish K. Nandakumar, Christoph Muus, Jacob C. Ulirsch +8 more

A transcription factor atlas of directed differentiation

Cell(2023)10.1016/j.cell.2022.11.026

Top 6%

3.6DataRank

Top 6%232 citations

Sai Ma, Tristan Tay, Paul C. Kirchgatterer, Vanessa K. Verdine, Baolin Guo +14 more

Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex

Cell(2022)10.1016/j.cell.2022.09.010

Top 6%

3.5DataRank

Top 6%238 citations

Amanda J. Kedaigle, Martina Pigoni, Bruna Paulsen, Xian Adiconis, Kwanho Kim +14 more

ImmGen at 15

Nature Immunology(2020)10.1038/s41590-020-0687-4

N/A

2.8DataRank · unranked

81 citations

Stephanie Vargas Aguilar, Oscar A. Aguilar, Rhys S. Allan, El Ad David Amir, Véronique Angeli +94 more

Inference and effects of barcode multiplets in droplet-based single-cell assays

Nature Communications(2020)10.1038/s41467-020-14667-5

N/A

2.1DataRank · unranked

76 citations

Sai Ma, Fabiana M. Duarte, Jason D. Buenrostro, Caleb A. Lareau

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.272831

Top 11%

1.9DataRank

Top 11%36 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +15 more

Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields

Molecular Cell(2020)10.1016/j.molcel.2020.07.003

N/A

1.6DataRank · unranked

65 citations

Assaf Amitai, Jason D. Buenrostro, Aditi Chakrabarti, Lingluo Chu, Anders S. Hansen +12 more

A microRNA expression and regulatory element activity atlas of the mouse immune system

Nature Immunology(2021)10.1038/s41590-021-00944-y

Top 15%

1.4DataRank

Top 15%38 citations

Aleksandra Wroblewska, Maxime Dhainaut, Hideyuki Yoshida, Jonathan M. Shaffer, Anela Bektesevic +91 more

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

Nature Methods(2013)10.1038/nmeth.2688

N/A

1.3DataRank · unranked

6962 citations

Jeff Goldy, Lisa C. Zaba, Howard Y. Chang, William J. Greenleaf, Jason D. Buenrostro

Structural and functional properties of mSWI/SNF chromatin remodeling complexes revealed through single-cell perturbation screens

Molecular Cell(2023)10.1016/j.molcel.2023.03.013

N/A

1.2DataRank · unranked

47 citations

Oana Ursu, Alexander P. Wu, Evan B. Winter, Michael S. Cuoco, Sai Ma +7 more

Deciphering the impact of genomic variation on function

Nature(2024)10.1038/s41586-024-07510-0

N/A

1.1DataRank · unranked

89 citations

Jesse M. Engreitz, Heather A. Lawson, Harinder Singh, Lea M. Starita, Gary C. Hon +95 more

Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex

Nature Neuroscience(2022)10.1038/s41593-022-01123-4

N/A

1.1DataRank · unranked

48 citations

Sai Ma, Juliana Brown, Kwanho Kim, Vanessa Murek, Lucia Trastulla +8 more

Systematic benchmarking of single-cell ATAC-sequencing protocols

Nature Biotechnology(2023)10.1038/s41587-023-01881-x

N/A

1.1DataRank · unranked

52 citations

Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens +42 more

Functional Inference of Gene Regulation using Single-Cell Multi-Omics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.453784

N/A

1.1DataRank · unranked

21 citations

Fabiana M. Duarte, Yan Hu, Sai Ma, Jennifer Chew, Caleb A. Lareau +6 more

Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

Cell(2020)10.1016/j.cell.2020.09.056

N/A

1.1DataRank · unranked

1182 citations

Bing Zhang, Lindsay M. LaFave, Andrew S. Earl, Zachary Chiang, Yan Hu +11 more

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

Nature Methods(2021)10.1038/s41592-021-01264-7

N/A

1.0DataRank · unranked

856 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +17 more

Single-cell multiomics atlas of organoid development uncovers longitudinal molecular programs of cellular diversification of the human cerebral cortex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.17.484798

Top 20%

1.0DataRank

Top 20%22 citations

Amanda J. Kedaigle, Martina Pigoni, Bruna Paulsen, Xian Adiconis, Kwanho Kim +14 more

Multiscale footprints reveal the organization of cis-regulatory elements

Nature(2025)10.1038/s41586-024-08443-4

N/A

0.928DataRank · unranked

52 citations

Max A. Horlbeck, Ruochi Zhang, Sai Ma, Rojesh Shrestha, Vinay K. Kartha +17 more

Induction and transcriptional regulation of the co-inhibitory gene module in T cells

Nature(2018)10.1038/s41586-018-0206-z

N/A

0.918DataRank · unranked

453 citations

Asaf Madi, Takaaki Kondo, Huiyuan Zhang, Nandini Acharya, Meromit Singer +17 more

Epigenetic Memory of COVID-19 in Innate Immune Cells and Their Progenitors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.09.479588

N/A

0.867DataRank · unranked

17 citations

Arjun Ravishankar, Siddhartha Sharma, Christopher N. Parkhurst, Djamel Nehar-Belaid, Sai Ma +31 more

BACH2 regulates diversification of regulatory and proinflammatory chromatin states in TH17 cells

Nature Immunology(2024)10.1038/s41590-024-01901-1

N/A

0.863DataRank · unranked

40 citations

Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian +16 more

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

Nature Biotechnology(2020)10.1038/s41587-020-0645-6

N/A

0.860DataRank · unranked

307 citations

Leif S. Ludwig, Christoph Muus, Satyen H. Gohil, Tongtong Zhao, Zachary Chiang +15 more

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

Cancer Cell(2020)10.1016/j.ccell.2020.06.006

N/A

0.820DataRank · unranked

236 citations

Vinay K. Kartha, Sai Ma, Kevin Meli, Isabella Del Priore, Caleb A. Lareau +13 more

In situ genome sequencing resolves DNA sequence and structure in intact biological samples

Science(2021)10.1126/science.aay3446

N/A

0.805DataRank · unranked

213 citations

Zachary Chiang, Paul Reginato, Sarah Mangiameli, Evan Murray, Chun‐Chen Yao +9 more

scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.19.613754

N/A

0.758DataRank · unranked

20 citations

Laura D. Martens, Alexander Karollus, Trevor Manz, Jason D. Buenrostro, Fabian Joachim Theis +2 more

Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung

Cancer Discovery(2021)10.1158/2159-8290.cd-21-0248

N/A

0.714DataRank · unranked

116 citations

Sai Ma, Lindsay M. LaFave, Arjun Bhutkar, Manyuan Liu, Lydia P. DeAngelo +18 more

Positional influence on cellular transcriptional identity revealed through spatially segmented single-cell transcriptomics

Cell Systems(2023)10.1016/j.cels.2023.05.003

N/A

0.711DataRank · unranked

16 citations

Aleksandra M. Michalowski, Michele Ceribelli, Joachim De Jonghe, Maria Vias, Deanna Riley +12 more

The Somatic Mosaicism across Human Tissues Network

Nature(2025)10.1038/s41586-025-09096-7

N/A

0.672DataRank · unranked

43 citations

Ji Won Oh, Yujin Angelina Choi, Nam Seop Lim, Boxun Zhao, Adam Voshall +365 more

PHF6 regulates phenotypic plasticity through chromatin organization within lineage-specific genes

Genes & Development(2017)10.1101/gad.295857.117

N/A

0.617DataRank · unranked

60 citations

Jordan M.E. Bartlebaugh, Yunpeng Liu, Arjun J. Bhutkar, Abraham S. Weintraub, Jason D. Buenrostro +9 more

A transcription factor atlas of directed differentiation

Cell(2024)10.1016/j.cell.2024.04.038

N/A

0.567DataRank · unranked

14 citations

Sai Ma, Tristan Tay, Paul C. Kirchgatterer, Vanessa K. Verdine, Baolin Guo +14 more

Degradation of IKZF1 prevents epigenetic progression of T cell exhaustion in an antigen-specific assay

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101804

N/A

0.500DataRank · unranked

12 citations

Gayathri Bommakanti, Elizabeth Jaensch, Aparna Gorthi, Iswarya Karapa Reddy, Yan Hu +11 more

The chromatin landscape of Th17 cells reveals mechanisms of diversification of regulatory and pro-inflammatory states

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.26.482041

N/A

0.489DataRank · unranked

12 citations

Alexandra Schnell, Maryann Zhao, Linglin Huang, Yu Hou, Elena Christian +13 more

Cell of origin epigenetic priming determines susceptibility to Tet2 mutation

Nature Communications(2024)10.1038/s41467-024-48508-6

N/A

0.488DataRank · unranked

13 citations

Vinay K. Kartha, Fabiana M. Duarte, Trine Kristiansen, Christina Mayerhofer, Rojesh Shrestha +7 more

scooby: modeling multimodal genomic profiles from DNA sequence at single-cell resolution

Nature Methods(2025)10.1038/s41592-025-02854-5

N/A

0.416DataRank · unranked

14 citations

Laura D. Martens, Alexander Karollus, Trevor Manz, Jason D. Buenrostro, Fabian Joachim Theis +2 more

Early transcriptional effects of inflammatory cytokines reveal highly redundant cytokine networks

The Journal of Experimental Medicine(2025)10.1084/jem.20241207

N/A

0.406DataRank · unranked

14 citations

Liang Yang, Jonathan J. Kotzin, Dughan Ahimovic, Michael J. Bale, Peter A. Nigrović +83 more

Invigorating discovery and clinical translation of aging biomarkers

Nature Aging(2025)10.1038/s43587-025-00838-w

N/A

0.330DataRank · unranked

6 citations

Chiara Herzog, Kejun Ying, Alan Tomusiak, Jessica Kasamoto, Raghav Sehgal +41 more

Coupling CRISPR scanning with targeted chromatin accessibility profiling using a double-stranded DNA deaminase

Nature Methods(2025)10.1038/s41592-025-02811-2

N/A

0.293DataRank · unranked

4 citations

Simon P. Shen, Hu Yan, Hui Si Kwok, Allison P. Siegenfeld, Ceejay Lee +8 more

Adrenergic signaling coordinates distant and local responses to amputation in axolotl

Cell(2025)10.1016/j.cell.2025.09.025

N/A

0.269DataRank · unranked

5 citations

Tim Froitzheim, Steven J. Blair, Siddhartha G. Jena, Hani D. Singer, Julia C. Paoli +33 more

775 Hyperactivation of sympathetic nerves drives melanocyte stem cell depletion

Journal of Investigative Dermatology(2020)10.1016/j.jid.2020.03.789

N/A

0.186DataRank · unranked

2 citations

I. Rachman, M. He, S. Choi, W.A. Gonçalves, Y. Shwartz +21 more

Author Correction: Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

Nature Biotechnology(2023)10.1038/s41587-023-01942-1

N/A

0.179DataRank · unranked

2 citations

Leif S. Ludwig, Christoph Muus, Satyen H. Gohil, Tongtong Zhao, Zachary Chiang +15 more

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

Cancer Cell(2025)10.1016/j.ccell.2025.02.025

N/A

0.165DataRank · unranked

2 citations

Vinay K. Kartha, Sai Ma, Kevin Meli, Isabella Del Priore, Santiago Naranjo +13 more

Temporally-Divergent Regulatory Mechanisms Govern Neuronal Development and Diversification in the Neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.23.263434

N/A

0.107DataRank · unranked

1 citations

Sai Ma, Juliana Brown, Kwanho Kim, Vanessa Murek, Lucia Trastulla +8 more

Engineered histones reshape chromatin in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.10.674980

N/A

0.104DataRank · unranked

1 citations

Surya Nagaraja, Andrew Earl, Amalia Rose Driller-Colangelo, Michael A. Quezada, Ena Oreskovic +5 more

Data from Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung

(2023)10.1158/2159-8290.c.6549551

N/A

0DataRank · unranked

0 citations

Sai Ma, Lindsay M. LaFave, Arjun J. Bhutkar, Manyuan Liu, Lydia P. DeAngelo +18 more

RNA-seq (cell line) Supplementary Data from Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung

INDIGO (University of Illinois at Chicago)(2023)10.1158/2159-8290.22541090.v1

Top 100%

0DataRank

Top 100%0 citations

Sai Ma, Lindsay M. LaFave, Arjun J. Bhutkar, Manyuan Liu, Lydia P. DeAngelo +18 more

Photoselective sequencing: microscopically-guided genomic measurements with subcellular resolution

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.12.507600

N/A

0DataRank · unranked

1 citations

Haiqi Chen, Andrew Earl, Julie A. Dobkin, Daniel Lesman, Jason D. Buenrostro +2 more

Data from Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung

(2023)10.1158/2159-8290.c.6549551.v1

N/A

0DataRank · unranked

0 citations

Sai Ma, Lindsay M. LaFave, Arjun J. Bhutkar, Manyuan Liu, Lydia P. DeAngelo +18 more

Heritable transcriptional defects from aberrations of nuclear architecture

Nature(2023)10.1038/s41586-023-06157-7

N/A

0DataRank · unranked

87 citations

Nikos A. Mynhier, Shiwei Liu, Gregory J. Brunette, Ema Stokasimov, Etai Jacob +7 more

SHARE-seq V1 v1

(2020)10.17504/protocols.io.bmbik2ke

N/A

0DataRank · unranked

0 citations

Prisca Liberali, Jason D. Buenrostro, Sai Ma

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5850231

Top 100%

0DataRank

Top 100%0 citations

Christopher Flerin, Paula Soler, Albert Rafels, Gert Hulselmans, Valerie Christiaens +25 more

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5850232

Top 100%

0DataRank

Top 100%0 citations

Christopher Flerin, Paula Soler, Albert Rafels, Gert Hulselmans, Valerie Christiaens +25 more

Protocol for single-cell ATAC sequencing using combinatorial indexing in mouse lung adenocarcinoma

STAR Protocols(2021)10.1016/j.xpro.2021.100583

N/A

0DataRank · unranked

19 citations

Sai Ma, Jonathan Strecker, Tyler Jacks, Lindsay M. LaFave, Jason D. Buenrostro +1 more

Deep learning-based enhancement of epigenomics data with AtacWorks

Nature Communications(2021)10.1038/s41467-021-21765-5

N/A

0DataRank · unranked

59 citations

Zachary Chiang, Nikolai Yakovenko, Fabiana M. Duarte, Johnny Israeli, Jason D. Buenrostro +1 more

CUT&RUN Supplementary Data from Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung

(2023)10.1158/2159-8290.22541093

Top 100%

0DataRank

Top 100%0 citations

Sai Ma, Lindsay M. LaFave, Arjun J. Bhutkar, Manyuan Liu, Lydia P. DeAngelo +18 more

Spatial genomics enables multi-modal study of clonal heterogeneity in tissues

Nature(2021)10.1038/s41586-021-04217-4

N/A

0DataRank · unranked

276 citations

Zachary Chiang, Julia W. Morriss, Lindsay M. LaFave, Evan Murray, Isabella Del Priore +10 more

Bulk ATAC-seq Supplementary Data from Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung

(2023)10.1158/2159-8290.22541096

Top 100%

0DataRank

Top 100%0 citations

Sai Ma, Lindsay M. LaFave, Arjun J. Bhutkar, Manyuan Liu, Lydia P. DeAngelo +18 more

Sustained Activation of AMPK Enhances Differentiation of Human iPSC-Derived Cardiomyocytes via Sirtuin Activation

Stem Cell Reports(2020)10.1016/j.stemcr.2020.06.012

N/A

0DataRank · unranked

28 citations

Jessica C. Garbern, Sai Ma, Rebecca Sereda, Jeffrey Conde, Guido Krähenbühl +5 more

HBO1 functions as an epigenetic barrier to hepatocyte plasticity and reprogramming during liver injury

Cell stem cell(2025)10.1016/j.stem.2025.04.010

N/A

0DataRank · unranked

4 citations

Andrew Earl, Sai Ma, Karel P. Alcedo, Jacquelyn O. Russell, Fabiana M. Duarte +11 more

CUT&RUN Supplementary Data from Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung

INDIGO (University of Illinois at Chicago)(2023)10.1158/2159-8290.22541093.v1

Top 100%

0DataRank

Top 100%0 citations

Sai Ma, Lindsay M. LaFave, Arjun J. Bhutkar, Manyuan Liu, Lydia P. DeAngelo +18 more

Supplementary Figures S1-S7 from Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung

INDIGO (University of Illinois at Chicago)(2023)10.1158/2159-8290.22541081.v1

N/A

0DataRank · unranked

0 citations

Sai Ma, Lindsay M. LaFave, Arjun J. Bhutkar, Manyuan Liu, Lydia P. DeAngelo +18 more

Jason D. Buenrostro

Indexed papers

Top data-sharing exemplar

Papers