Kristen W. Lynch

Also affiliated with University of Pennsylvania, Philadelphia University

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.548Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer

Nucleic Acids Research(2023)10.1093/nar/gkad1043

Top 36%

0.548DataRank

Top 36%20 citations

San Jewell, Kristen W. Lynch, Andrei Thomas‐Tikhonenko, Yoseph Barash, Mathieu Quesnel-Vallières

Papers

Driven by 31 papers — median percentile 64. Top paper: “Viral-induced alternative splicing of host genes promotes influenza replication”.

Viral-induced alternative splicing of host genes promotes influenza replication

eLife(2020)10.7554/elife.55500

N/A

2.1DataRank · unranked

76 citations

Mark Dittmar, Michael J. Mallory, Prasanna Bhat, Max Ferretti, Beatriz M. A. Fontoura +3 more

Cryptic MHC-E epitope from influenza elicits a potent cytolytic T cell response

Nature Immunology(2023)10.1038/s41590-023-01644-5

N/A

0.769DataRank · unranked

28 citations

Nikita Maheshwari, Bridget E. Begg, Annalisa Nicastri, Emma Hedgepeth, Hiromi Muramatsu +8 more

MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer

Nucleic Acids Research(2023)10.1093/nar/gkad1043

Top 36%

0.548DataRank

Top 36%20 citations

San Jewell, Kristen W. Lynch, Andrei Thomas‐Tikhonenko, Yoseph Barash, Mathieu Quesnel-Vallières

Viral-Induced Alternative Splicing of Host Genes Promotes Influenza Replication

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.122044

N/A

0DataRank · unranked

2 citations

Mark Dittmar, Michael J. Mallory, Prasanna Bhat, Max Ferretti, Beatriz M. A. Fontoura +3 more

Pharmacological activation of STING blocks SARS-CoV-2 infection

Science Immunology(2021)10.1126/sciimmunol.abi9007

N/A

0DataRank · unranked

193 citations

Max Ferretti, Baoling Ying, Hélène C. Descamps, Emily M. Lee, Mark Dittmar +15 more

Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

Blood Cancer Discovery(2021)10.1158/2643-3230.bcd-21-0087

N/A

0DataRank · unranked

63 citations

Elisabeth Gillespie, Ammar S. Naqvi, Katharina E. Hayer, Zhiwei Ang, Manuel Torres-Diz +17 more

PRMT5 Promotes Symmetric Dimethylation of RNA Processing Proteins and Modulates Activated T Cell Alternative Splicing and Ca2+/NFAT Signaling

ImmunoHorizons(2021)10.4049/immunohorizons.2100076

N/A

0DataRank · unranked

14 citations

Kelsi O West, Shridhar Sanghvi, George Laliotis, Laura M. Agosto, Kristen W. Lynch +5 more

Identifying common transcriptome signatures of cancer by interpreting deep learning models

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.11.467790

N/A

0DataRank · unranked

3 citations

Mathieu Quesnel-Vallières, Andrei Thomas‐Tikhonenko, Kristen W. Lynch, Yoseph Barash, Anupama Jha

PRMT5 promotes symmetric dimethylation of RNA processing proteins and modulates activated T cell alternative splicing and Ca 2+ /NFAT signaling

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.24.457384

N/A

0DataRank · unranked

0 citations

Kelsi O West, Shridhar Sanghvi, George Laliotis, Laura M. Agosto, Kristen W. Lynch +5 more

RNase L activation in the cytoplasm induces aberrant processing of mRNAs in the nucleus

PLoS Pathogens(2022)10.1371/journal.ppat.1010930

N/A

0DataRank · unranked

46 citations

Nina Ripin, Max Ferretti, Laura A. St Clair, Emma R. Worden-Sapper, Fernando Salgado +5 more

Identifying common transcriptome signatures of cancer by interpreting deep learning models

Genome biology(2022)10.1186/s13059-022-02681-3

N/A

0DataRank · unranked

38 citations

Mathieu Quesnel-Vallières, David Wang, Andrei Thomas‐Tikhonenko, Kristen W. Lynch, Yoseph Barash +1 more

Nuclear speckle integrity and function require TAO2 kinase

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2206046119

N/A

0DataRank · unranked

14 citations

Matthew A. Esparza, Ishmael Dehghan, Vasilisa Aksenova, Ke Zhang, Kimberly Batten +12 more

The lncRNA ALPHA specifically targets chikungunya virus to control infection

Molecular Cell(2022)10.1016/j.molcel.2022.08.030

N/A

0DataRank · unranked

21 citations

Max Ferretti, Mark Dittmar, Julian Stoute, Megan C. Sullivan, Kanupriya Whig +8 more

The global Protein-RNA interaction map of ESRP1 defines a post-transcriptional program that is essential for epithelial cell function

iScience(2022)10.1016/j.isci.2022.105205

N/A

0DataRank · unranked

14 citations

Jae Yeon Hwang, Mathieu Quesnel-Vallières, Matthew J. Sears, Yuequin Yang, Peter Stoilov +5 more

RNase L-mediated RNA decay alters 3’ end formation and splicing of host mRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.28.478180

N/A

0DataRank · unranked

4 citations

Nina Ripin, Max Ferretti, Laura A. St Clair, Emma R. Worden-Sapper, Sara L. Sawyer +4 more

Alternative Splicing of Apoptosis Genes Promotes Human T Cell Survival

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.17.496561

N/A

0DataRank · unranked

1 citations

Caleb M. Radens, Max Ferretti, Matthew R. Gazzara, Kristen W. Lynch, Davia Blake

Cryptic MHC-E epitope from influenza elicits a potent cytolytic T cell response

Research Square(2022)10.21203/rs.3.rs-2105807/v1

N/A

0DataRank · unranked

1 citations

Nikita Maheshwari, Bridget Begg, Annalisa Nicastri, Hiromi Muramatsu, Norbert Pardi +7 more

Influenza virus mRNAs encode determinants for nuclear export via the cellular TREX-2 complex

Nature Communications(2023)10.1038/s41467-023-37911-0

N/A

0DataRank · unranked

32 citations

Vasilisa Aksenova, Matthew R. Gazzara, Emily A. Rex, Sadaf Aslam, Christina Haddad +14 more

Structural basis for high-order complex of SARNP and DDX39B to facilitate mRNP assembly

Cell Reports(2023)10.1016/j.celrep.2023.112988

N/A

0DataRank · unranked

29 citations

Shengyan Gao, Ke Zhang, Prasanna Bhat, Bradley P. Clarke, Kimberly Batten +10 more

Alternative splicing of HDAC7 regulates its interaction with 14-3-3 proteins to alter histone marks and target gene expression

Cell Reports(2023)10.1016/j.celrep.2023.112273

N/A

0DataRank · unranked

13 citations

Michael J. Mallory, Max Ferretti, Davia Blake, Keegan S. Krick, Matthew R. Gazzara +3 more

A Bayesian model for unsupervised detection of RNA splicing based subtypes in cancers

Nature Communications(2023)10.1038/s41467-022-35369-0

N/A

0DataRank · unranked

9 citations

Mathieu Quesnel-Vallières, San Jewell, Moein Elzubeir, Kristen W. Lynch, Andrei Thomas‐Tikhonenko +2 more

A mitochondrial surveillance mechanism activated by SRSF2 mutations in hematologic malignancies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.25.546449

N/A

0DataRank · unranked

1 citations

Sudhish A. Devadiga, Robert F. Stanley, Ryan Morrow, Kevin A. Janssen, Mathieu Quesnel-Vallières +11 more

A mitochondrial surveillance mechanism activated by SRSF2 mutations in hematologic malignancies

Journal of Clinical Investigation(2024)10.1172/jci175619

N/A

0DataRank · unranked

19 citations

Sudhish A. Devadiga, Robert F. Stanley, Ryan Morrow, Kevin A. Janssen, Mathieu Quesnel-Vallières +11 more

Machine learning-optimized targeted detection of alternative splicing

Nucleic Acids Research(2024)10.1093/nar/gkae1260

N/A

0DataRank · unranked

3 citations

Nathaniel Islas, San Jewell, Di Wu, Anupama Jha, Caleb M. Radens +5 more

Machine learning-optimized targeted detection of alternative splicing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.20.614162

N/A

0DataRank · unranked

5 citations

Nathaniel Islas, San Jewell, Anupama Jha, Caleb M. Radens, Jeffrey A. Pleiss +4 more

eLife Assessment: C. elegans Dicer acts with the RIG-I-like helicase DRH-1 and RDE-4 to cleave dsRNA

(2024)10.7554/elife.93979.1.sa2

N/A

0DataRank · unranked

0 citations

Kristen W. Lynch

Alternatively spliced isoforms of IRF7 differentially regulate interferon expression to tune response to viral infection

Cell Reports(2025)10.1016/j.celrep.2025.116166

N/A

0DataRank · unranked

6 citations

Max Ferretti, Olivia Howard, Swechha M. Pokharel, R.M. McCracken, Simon Boudreault +5 more

Integrative analysis of RNA binding proteins identifies DDX55 as a novel regulator of 3’UTR isoform diversity

Genome biology(2025)10.1186/s13059-025-03852-8

N/A

0DataRank · unranked

1 citations

Timothy Cater, Michael J. Mallory, Yoseph Barash, Kristen W. Lynch, Matthew R. Gazzara

Integrative analysis of RNA binding proteins identifies DDX55 as a novel regulator of 3’UTR isoform diversity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.06.652471

N/A

0DataRank · unranked

0 citations

Timothy Cater, Michael J. Mallory, Yoseph Barash, Kristen W. Lynch, Matthew R. Gazzara

Reciprocal regulation of hnRNP C and CELF2 through translation and transcription tunes splicing activity in T cells

Nucleic Acids Research(2020)10.1093/nar/gkaa295

N/A

0DataRank · unranked

25 citations

Sean P. McClory, Rakesh Chatrikhi, Matthew R. Gazzara, Robert Jordan Ontiveros, Kristen W. Lynch +1 more

Alternative splicing redefines landscape of commonly mutated genes in acute myeloid leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.21.107557

N/A

0DataRank · unranked

4 citations

Michael J. Mallory, Mathieu Quesnel-Vallières, D. Schultz, Martin Carroll, Yoseph Barash +3 more

Kristen W. Lynch

Indexed papers

Top data-sharing exemplar

Papers