MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer is a dataset published in Nucleic Acids Research (2023). On theSindex it has a DataRank of 0.548, placing it in the top 35.5% of the data-sharing corpus. It has been cited 20 times, with 10 citing works in its 1-hop citation network. Its calibrated FAIR score is 42/100.
Ranks in the top 36% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“This database, available at https://majiq.biociphers.org/majiqlopedia/ , includes a user-friendly interface that provides graphical representations of junction usage quantification for each junction across all tissue or cancer types.”
The URL provided is a web address, not a registered persistent identifier.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“This database, available at https://majiq.biociphers.org/majiqlopedia/ , includes a user-friendly interface that provides graphical representations of junction usage quantification for each junction across all tissue or cancer types.”
The named host is a project website, not a recognised data repository.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“This database, available at https://majiq.biociphers.org/majiqlopedia/ , includes a user-friendly interface that provides graphical representations of junction usage quantification for each junction across all tissue or cancer types.”
The dataset URL appears only in the body text, not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The data underlying MAJIQlopedia is publicly available, with restricted access in some cases, from the sources listed in Supplementary Tables S2 and S3.”— not found in the paper; verdict downgraded
The statement points to supplementary tables rather than a repository record. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“From 7654 normal and 11 059 cancer samples (Figure 2A and Supplementary Figure 1 ), we report 210 394 splicing variations totalling 486 175 alternatively used splice junctions in normal tissues and 155 226 splicing variations totalling 338 317 alternatively used splice junctions in cancer.”
The dataset content is described in running prose without an itemised inventory. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“This database, available at https://majiq.biociphers.org/majiqlopedia/ , includes a user-friendly interface that provides graphical representations of junction usage quantification for each junction across all tissue or cancer types.”
The text states the data is freely available at a URL with no precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The data underlying MAJIQlopedia is publicly available, with restricted access in some cases, from the sources listed in Supplementary Tables S2 and S3.”— not found in the paper; verdict downgraded
The text includes the label 'publicly available' for the data. [downgraded to 'partial' — no verifiable quote from the paper]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“The data underlying MAJIQlopedia is publicly available, with restricted access in some cases, from the sources listed in Supplementary Tables S2 and S3.”— not found in the paper; verdict downgraded
The MAJIQlopedia data is publicly available with no named gatekeeper for its own data; the statement refers to underlying sources.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence states when the data become available or how long they persist.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is named for the MAJIQlopedia data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier for an external resource (e.g., accession, DOI) is given in the text.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is stated for the MAJIQlopedia data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code locator is provided for the study's own code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Next Generation of Scientists Award from the Cancer Research Society [990633 to M.Q.V.]; U01 and R01 grants from National Institutes of Health [CA232563 to A.T.T., K.W.L. and Y.B.; LM013437 to Y.B.].”
Award numbers are given for the funding sources.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Sequencing adapters were trimmed with TrimGalore (v0.6.6) ( 35 ). Reads were aligned with STAR (v2.5.2a) ( 36 ) against the hg38 human genome assembly ( 37 ). Mapped reads were sorted and indexed using samtools (v1.11) ( 38 ). Gene expression quantification was carried out using Salmon (v0.14.0) ( 39 ) in quasi-mapping mode using an index generated with Ensembl GRCh38 transcriptome release 94. Splice junctions were quantified using MAJIQ (v2.2) ( 21 ).”
The text names specific tools and versions used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, codebook) is mentioned as accompanying the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.457
From this paper's citation signal
Citation Network Contribution
0.0916
From 5 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 10 citers.
Cancer Research Society
Grant: 990633
National Institutes of Health
Grant: CA232563
National Institutes of Health
Grant: LM013437
NCI NIH HHS
Grant: U01 CA232563
NLM NIH HHS
Grant: R01 LM013437
NIGMS NIH HHS
Grant: R35 GM118048
National Institutes of Health
Grant: 5R01LM013437-04
Methods for improving clinical diagnostic by detection, prediction, interpretation and prioritization of aberrant transcriptome variations
National Institutes of Health
Grant: 3U01CA232563-01S2
Cassette exons in neoplastic pro-B-cells: implications for immunotherapy
Fields of Study
MeSH Terms
Keywords