Samuel Sledzieski

Also affiliated with Flatiron Institute, Massachusetts Institute of Technology

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 14 papers. Top paper: “Contrastive learning in protein language space predicts interactions between drugs and protein targets”.

Contrastive learning in protein language space predicts interactions between drugs and protein targets

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2220778120

N/A

4.5DataRank · unranked

191 citations

Samuel Sledzieski, Bryan D. Bryson, Lenore Cowen, Bonnie Berger, Rohit Singh

Democratizing protein language models with parameter-efficient fine-tuning

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2405840121

N/A

0.663DataRank · unranked

82 citations

Meghana Kshirsagar, Minkyung Baek, Rahul Dodhia, Juan Lavista Ferres, Bonnie Berger +1 more

Single-cell mosaicism analysis reveals cell-type-specific somatic mutational burden in Alzheimer’s Dementia

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.21.489103

N/A

0.341DataRank · unranked

6 citations

Carles B. Adsera, Yongjin P. Park, Hansruedi Mathys, Samuel Sledzieski, Zhuyu Peng +4 more

Phylogenetic reconciliation reveals extensive ancestral recombination in Sarbecoviruses and the SARS-CoV-2 lineage

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.12.456131

N/A

0.208DataRank · unranked

3 citations

Samuel Sledzieski, Bonnie Berger, Yi-Chieh Wu, Mukul S. Bansal, Sumaira Zaman

Topsy-Turvy: integrating a global view into sequence-based PPI prediction

Bioinformatics(2022)10.1093/bioinformatics/btac258

N/A

0DataRank · unranked

94 citations

Kapil Devkota, Samuel Sledzieski, Bonnie Berger, Lenore Cowen, Rohit Singh

Adapting protein language models for rapid DTI prediction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.03.515084

N/A

0DataRank · unranked

12 citations

Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

Contrasting drugs from decoys

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.03.515086

N/A

0DataRank · unranked

1 citations

Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

Sequence-based prediction of protein-protein interactions: a structure-aware interpretable deep learning model

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.22.427866

N/A

0DataRank · unranked

30 citations

Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

TT3D: Leveraging precomputed protein 3D sequence models to predict protein–protein interactions

Bioinformatics(2023)10.1093/bioinformatics/btad663

N/A

0DataRank · unranked

32 citations

Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

Transfer of knowledge from model organisms to evolutionarily distant non-model organisms: The coral Pocillopora damicornis membrane signaling receptome

PLoS ONE(2023)10.1371/journal.pone.0270965

N/A

0DataRank · unranked

10 citations

Nathanael Brenner, Samuel Sledzieski, Monsurat Olaosebikan, Liza M. Roger, Matthew Lynn-Goin +10 more

Democratizing Protein Language Models with Parameter-Efficient Fine-Tuning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.566187

N/A

0DataRank · unranked

15 citations

Meghana Kshirsagar, Minkyung Baek, Bonnie Berger, Rahul Dodhia, Juan Lavista Ferres +1 more

D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions

Cell Systems(2021)10.1016/j.cels.2021.08.010

N/A

0DataRank · unranked

209 citations

Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

Rapid and accurate prediction of protein homo-oligomer symmetry with Seq2Symm

Research Square(2024)10.21203/rs.3.rs-4215086/v1

N/A

0DataRank · unranked

6 citations

Artur Meller, Ian R. Humphreys, Samuel Sledzieski, Yixi Xu, Rahul Dodhia +7 more

Memory-efficient, accelerated protein interaction inference with blocked, multi-GPU D-SCRIPT

Bioinformatics(2025)10.1093/bioinformatics/btaf564

N/A

0DataRank · unranked

0 citations

Samuel Sledzieski, Lenore Cowen, Bonnie Berger, Daniel E. Schäffer