Joshua Z. Levin

Broad Institute

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

10.3Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Single-cell transcriptomic profiling of the aging mouse brain

Nature Neuroscience(2019)10.1038/s41593-019-0491-3

Top 4%

5.6DataRank

Top 4%791 citations

Scott L. Lipnick, Brendan T. Innes, Sean K. Simmons, Xian Adiconis, Danielle Dionne +13 more

Papers

Driven by 41 papers — median percentile 87. Top paper: “Single-cell transcriptomic profiling of the aging mouse brain”.

Single-cell transcriptomic profiling of the aging mouse brain

Nature Neuroscience(2019)10.1038/s41593-019-0491-3

Top 4%

5.6DataRank

Top 4%791 citations

Scott L. Lipnick, Brendan T. Innes, Sean K. Simmons, Xian Adiconis, Danielle Dionne +13 more

Comprehensive comparative analysis of 5′-end RNA-sequencing methods

Nature Methods(2018)10.1038/s41592-018-0014-2

N/A

4.3DataRank · unranked

141 citations

Adam L. Haber, Sean K. Simmons, Pradeep Natarajan, Zhe Ji, Michele A. Busby +8 more

Distinct subnetworks of the thalamic reticular nucleus

Nature(2020)10.1038/s41586-020-2504-5

N/A

4.1DataRank · unranked

217 citations

Violeta G. López-Huerta, Xian Adiconis, Kirsten Levandowski, Soonwook Choi, Sean K. Simmons +25 more

Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex

Cell(2022)10.1016/j.cell.2022.09.010

Top 6%

3.5DataRank

Top 6%238 citations

Amanda J. Kedaigle, Martina Pigoni, Bruna Paulsen, Xian Adiconis, Kwanho Kim +14 more

Brain Chimeroids reveal individual susceptibility to neurotoxic triggers

Nature(2024)10.1038/s41586-024-07578-8

N/A

2.5DataRank · unranked

90 citations

Irene Faravelli, Tyler Faits, Sophia Andreadis, Sebastiano Trattaro, Xian Adiconis +10 more

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Nature Biotechnology(2011)10.1038/nbt.1883

N/A

1.5DataRank · unranked

22458 citations

Brian J. Haas, Moran Yassour, Joshua Z. Levin, Ido Amit, Xian Adiconis +19 more

Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex

Nature Neuroscience(2022)10.1038/s41593-022-01123-4

N/A

1.1DataRank · unranked

48 citations

Sai Ma, Juliana Brown, Kwanho Kim, Vanessa Murek, Lucia Trastulla +8 more

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

Nature(2013)10.1038/nature12172

N/A

1.1DataRank · unranked

1301 citations

Rahul Satija, Xian Adiconis, Rona S. Gertner, Jellert T. Gaublomme, Raktima Raychowdhury +14 more

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

Nature Biotechnology(2010)10.1038/nbt.1633

N/A

1.1DataRank · unranked

1265 citations

Manuel Garber, Joshua Z. Levin, Julie Donaghey, James Robinson, Xian Adiconis +9 more

Individual brain organoids reproducibly form cell diversity of the human cerebral cortex

Nature(2019)10.1038/s41586-019-1289-x

N/A

1.1DataRank · unranked

1105 citations

Amanda J. Kedaigle, Sean K. Simmons, Allison Nash, Marina Rocha, Giorgia Quadrato +8 more

Single-cell multiomics atlas of organoid development uncovers longitudinal molecular programs of cellular diversification of the human cerebral cortex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.17.484798

Top 20%

1.0DataRank

Top 20%22 citations

Amanda J. Kedaigle, Martina Pigoni, Bruna Paulsen, Xian Adiconis, Kwanho Kim +14 more

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

Genome Research(2011)10.1101/gr.133009.111

N/A

1.0DataRank · unranked

814 citations

Eivind Valen, Alireza Heravi-Moussavi, Manuel Garber, Nadine L. Vastenhouw, Joshua Z. Levin +8 more

Comprehensive comparative analysis of strand-specific RNA sequencing methods

Nature Methods(2010)10.1038/nmeth.1491

N/A

0.996DataRank · unranked

765 citations

Moran Yassour, Xian Adiconis, Irene Newsham, Nir Friedman, Andreas Gnirke +3 more

Comparative analysis of RNA sequencing methods for degraded or low-input samples

Nature Methods(2013)10.1038/nmeth.2483

N/A

0.946DataRank · unranked

549 citations

Diego Borges-Rivera, Rahul Satija, David S. DeLuca, Michele A. Busby, Aaron M. Berlin +11 more

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

Nature Biotechnology(2020)10.1038/s41587-020-0469-4

N/A

0.940DataRank · unranked

526 citations

Atefeh Lafzi, Catia Moutinho, Christoph Ziegenhain, Davis J. McCarthy, Adrián Álvarez-Varela +40 more

Comparative Functional Genomics of the Fission Yeasts

Science(2011)10.1126/science.1203357

N/A

0.940DataRank · unranked

524 citations

Zehua Chen, Moran Yassour, Brian J. Haas, Naomi Habib, Ilan Wapinski +64 more

Autism genes converge on asynchronous development of shared neuron classes

Nature(2022)10.1038/s41586-021-04358-6

N/A

0.918DataRank · unranked

454 citations

Silvia Velasco, Amanda J. Kedaigle, Martina Pigoni, Giorgia Quadrato, Anthony J. Deo +23 more

Fetal brain response to maternal inflammation requires microglia

Development(2024)10.1242/dev.202252

N/A

0.898DataRank · unranked

37 citations

Nuria Domıńguez-Iturza, Jeffrey A. Stogsdill, Tyler Faits, Kwanho Kim, Joshua Z. Levin +2 more

Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods

Nature Biotechnology(2020)10.1038/s41587-020-0534-z

N/A

0.875DataRank · unranked

16 citations

Xian Adiconis, Sean K. Simmons, Monika S. Kowalczyk, Cynthia C. Hession, Nemanja Despot Marjanovic +17 more

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes

Science(2020)10.1126/science.aaz6063

N/A

0.865DataRank · unranked

319 citations

Sean K. Simmons, Amy Guo, Ashwin S. Shetty, Michelle Ko, Vahbiz Jokhi +12 more

The evolution, evolvability and engineering of gene regulatory DNA

Nature(2022)10.1038/s41586-022-04506-6

N/A

0.854DataRank · unranked

295 citations

Carl G. de Boer, Jennifer Molinet, Moran Yassour, Lin Fan, Xian Adiconis +6 more

Human brain organoids reveal accelerated development of cortical neuron classes as a shared feature of autism risk genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.10.376509

N/A

0.840DataRank · unranked

20 citations

Silvia Velasco, Amanda J. Kedaigle, Martina Pigoni, Giorgia Quadrato, Xian Adiconis +16 more

Development and evaluation of RNA-seq methods

Genome Biology(2010)10.1186/gb-2010-11-s1-p26

N/A

0.833DataRank · unranked

9 citations

Xian Adiconis, Moran Yassour, Dawn Thompson, Mitchell Guttman, Lin Fan +7 more

Cell-type specific defects inPTEN-mutant cortical organoids converge on abnormal circuit activity

Human Molecular Genetics(2023)10.1093/hmg/ddad107

N/A

0.709DataRank · unranked

24 citations

Ana Uzquiano, Bruna Paulsen, Amanda J. Kedaigle, Sung Min Yang, Panagiotis Symvoulidis +15 more

Single cell RNA-seq by mostly-natural sequencing by synthesis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.29.493705

N/A

0.399DataRank · unranked

1 citations

Gila Lithwick-Yanai, Xian Adiconis, Florian Oberstrass, Nika Iremadze, Kathryn Geiger-Schuller +11 more

Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.27.477911

N/A

0.381DataRank · unranked

6 citations

Kristina M. Holton, Richard M. Giadone, Ceren Ozek, Monika Saxena, Samara Santiago +14 more

Author Correction: Comprehensive comparative analysis of 5′-end RNA-sequencing methods

Nature Methods(2018)10.1038/s41592-018-0237-2

N/A

0.352DataRank · unranked

5 citations

Adam L. Haber, Sean K. Simmons, Pradeep Natarajan, Zhe Ji, Michele A. Busby +8 more

A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis -regulatory DNA sequences

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.17.430503

N/A

0.307DataRank · unranked

4 citations

Carl G. de Boer, Moran Yassour, Jennifer Molinet, Lin Fan, Xian Adiconis +6 more

Multi-donor human cortical Chimeroids reveal individual susceptibility to neurotoxic triggers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.05.558331

N/A

0.302DataRank · unranked

5 citations

Irene Faravelli, Tyler Faits, Sophia Andreadis, Sebastiano Trattaro, Rahel Kästli +8 more

Meta-analysis of the brain transcriptomes of multiple genetic mouse models of schizophrenia highlights dysregulation in striatum and thalamus

Translational Psychiatry(2025)10.1038/s41398-025-03563-5

Top 63%

0.218DataRank

Top 63%3 citations

Sean K. Simmons, Ajay Nadig, Zohreh Farsi, Wei-Chao Huang, Sameer Aryal +10 more

Erratum: Corrigendum: Comparative analysis of RNA sequencing methods for degraded or low-input samples

Nature Methods(2014)10.1038/nmeth0214-210e

N/A

0.212DataRank · unranked

2 citations

Diego Borges-Rivera, Rahul Satija, David S. DeLuca, Michele A. Busby, Aaron M. Berlin +11 more

Cell-type specific developmental defects in PTEN -mutant cortical organoids converge on abnormal circuit activity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.15.516664

N/A

0.115DataRank · unranked

1 citations

Ana Uzquiano, Bruna Paulsen, Amanda J. Kedaigle, Sung Min Yang, Panagiotis Symvoulidis +14 more

Temporally-Divergent Regulatory Mechanisms Govern Neuronal Development and Diversification in the Neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.23.263434

N/A

0.107DataRank · unranked

1 citations

Sai Ma, Juliana Brown, Kwanho Kim, Vanessa Murek, Lucia Trastulla +8 more

Methods to generate single-nucleus RNA-seq libraries from lung cancer samples v1

(2025)10.17504/protocols.io.36wgqpk9yvk5/v1

N/A

0DataRank · unranked

0 citations

Sean K. Simmons, Nathan Haywood, Xian Adiconis, Joshua Z. Levin, Jixiang Zhang

Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity

Genome biology(2021)10.1186/s13059-021-02301-6

N/A

0DataRank · unranked

17 citations

Walaa Oweis, Malka Nissim‐Rafinia, Moria Maman, Shahar Simon, Cynthia C. Hession +13 more

Human-specific enrichment of schizophrenia risk-genes in callosal neurons of the developing neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.10.459747

N/A

0DataRank · unranked

5 citations

Vanessa Murek, Kwanho Kim, Hsu-Hsin Chen, Sara Mancinelli, Paul Oyler +10 more

Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing

Nature Biotechnology(2022)10.1038/s41587-022-01452-6

N/A

0DataRank · unranked

53 citations

Gila Lithwick‐Yanai, Xian Adiconis, Florian C. Oberstrass, Nika Iremadze, Kathryn Geiger-Schuller +9 more

Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types

Nature Aging(2023)10.1038/s43587-023-00373-6

N/A

0DataRank · unranked

71 citations

Kristina M. Holton, Richard M. Giadone, Ceren Ozek, Monika Saxena, Samara Santiago +15 more

Lupus autoantibodies initiate a maladaptive equilibrium sustained by HMGB1:RAGE signaling and reversed by LAIR-1:C1q signaling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.01.538935

N/A

0DataRank · unranked

1 citations

Mark Mizrachi, Sean K. Simmons, Bahtiyar Toz, Jeffrey Wingard, Nazila Tehrani +7 more

Massively parallel in vivo Perturb-seq reveals cell-type-specific transcriptional networks in cortical development

Cell(2024)10.1016/j.cell.2024.04.050

N/A

0DataRank · unranked

69 citations

Boli Wu, Yuejia Liu, Sean K. Simmons, Kwanho Kim, Grace S. Clarke +19 more

Lupus autoantibodies initiate neuroinflammation sustained by continuous HMGB1:RAGE signaling and reversed by increased LAIR-1 expression

Nature Immunology(2024)10.1038/s41590-024-01772-6

N/A

0DataRank · unranked

35 citations

Mark Mizrachi, Sean K. Simmons, Bahtiyar Toz, Czeslawa Kowal, Jeffrey Wingard +9 more

Joshua Z. Levin

Indexed papers

Top data-sharing exemplar

Papers