Eliezer M. Van Allen

Also affiliated with Dana-Farber Cancer Institute, Whitehead Institute for Biomedical Research

MedicineComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.821Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Germ Cell Tumor Molecular Heterogeneity Revealed Through Analysis of Primary and Metastasis Pairs

JCO Precision Oncology(2020)10.1200/po.20.00166

Top 25%

0.821DataRank

Top 25%17 citations

Mark T.A. Donoghue, François Audenet, Nathan C. Wong, Eugene J. Pietzak, Craig M. Bielski +25 more

Papers

Driven by 119 papers — median percentile 0. Top paper: “Transcriptional mediators of treatment resistance in lethal prostate cancer”.

Transcriptional mediators of treatment resistance in lethal prostate cancer

Nature Medicine(2021)10.1038/s41591-021-01244-6

N/A

4.8DataRank · unranked

196 citations

Michael S. Cuoco, Jett Crowdis, Alice Bosma-Moody, Zhenwei Zhang, Kevin Bi +35 more

Evolution of delayed resistance to immunotherapy in a melanoma responder

Nature Medicine(2021)10.1038/s41591-021-01331-8

N/A

3.6DataRank · unranked

137 citations

Jia‐Ren Lin, Emily Robitschek, Gyulnara G. Kasumova, Alex Heyde, Alvin Shi +35 more

Subtype heterogeneity and epigenetic convergence in neuroendocrine prostate cancer

Nature Communications(2021)10.1038/s41467-021-26042-z

N/A

2.9DataRank · unranked

163 citations

Yingtian Xie, Alba Font‐Tello, Klothilda Lim, Sudeepa Syamala, Xintao Qiu +33 more

Evolution of myeloid-mediated immunotherapy resistance in prostate cancer

Nature(2024)10.1038/s41586-024-08290-3

N/A

2.2DataRank · unranked

154 citations

Zenghua Fan, Matthew Clark, Averey Lea, Diamond Luong, Ali Setayesh +12 more

The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance

Nature Genetics(2023)10.1038/s41588-023-01592-8

N/A

1.9DataRank · unranked

88 citations

Philippe Gui, Manasi K. Mayekar, Emily K. Law, Oriol Pich, Chris Bailey +80 more

Molecular correlates of response to eribulin and pembrolizumab in hormone receptor-positive metastatic breast cancer

Nature Communications(2021)10.1038/s41467-021-25769-z

N/A

1.8DataRank · unranked

48 citations

Jennifer L. Guerriero, Romualdo Barroso‐Sousa, Tianyu Li, Tess A. O’Meara, Anita Giobbie‐Hurder +24 more

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

Science(2016)10.1126/science.aad0501

N/A

1.3DataRank · unranked

5121 citations

Benjamin Izar, Sanjay M. Prakadan, Marc H. Wadsworth, Daniel Treacy, John J. Trombetta +39 more

Oncogenic Signaling Pathways in The Cancer Genome Atlas

Cell(2018)10.1016/j.cell.2018.03.035

N/A

1.2DataRank · unranked

3322 citations

Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor C. La +891 more

Phase Ib study of pembrolizumab in combination with trastuzumab emtansine for metastatic HER2-positive breast cancer

Journal for ImmunoTherapy of Cancer(2022)10.1136/jitc-2022-005119

N/A

1.2DataRank · unranked

39 citations

Tanya E. Keenan, Tianyu Li, Nabihah Tayob, Gerburg M. Wulf, Edward T. Richardson +10 more

Transcriptional mediators of treatment resistance in lethal prostate cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.19.998450

N/A

1.0DataRank · unranked

26 citations

Michael S. Cuoco, Jett Crowdis, Alice Bosma-Moody, Zhenwei Zhang, Kevin Bi +22 more

Gene Fusions Create Partner and Collateral Dependencies Essential to Cancer Cell Survival

Cancer Research(2021)10.1158/0008-5472.can-21-0791

N/A

1.0DataRank · unranked

27 citations

Bo Kyung A. Seong, Jett Crowdis, Jake R. Conway, Neekesh V. Dharia, Saif Alimohamed +17 more

Integrative molecular and clinical modeling of clinical outcomes to PD1 blockade in patients with metastatic melanoma

Nature Medicine(2019)10.1038/s41591-019-0654-5

N/A

1.0DataRank · unranked

829 citations

Bastian Schilling, Derek Liu, Antje Sucker, Elisabeth Livingstone, Livnat Jerby-Arnon +34 more

Tumor and immune reprogramming during immunotherapy in advanced renal cell carcinoma

Cancer Cell(2021)10.1016/j.ccell.2021.02.015

N/A

0.964DataRank · unranked

617 citations

Meng Xiao He, Ziad Bakouny, Abhay Kanodia, Sara Napolitano, Jingyi Wu +26 more

Germ Cell Tumor Molecular Heterogeneity Revealed Through Analysis of Primary and Metastasis Pairs

JCO Precision Oncology(2020)10.1200/po.20.00166

Top 25%

0.821DataRank

Top 25%17 citations

Mark T.A. Donoghue, François Audenet, Nathan C. Wong, Eugene J. Pietzak, Craig M. Bielski +25 more

Intrinsic Immunogenicity of Small Cell Lung Carcinoma Revealed by Its Cellular Plasticity

Cancer Discovery(2021)10.1158/2159-8290.cd-20-0913

N/A

0.809DataRank · unranked

219 citations

Erik H. Knelson, Jacquelyn O. Wolff, Amir Vajdi, Maria Saigí, Marco Campisi +38 more

Integrative molecular characterization of sarcomatoid and rhabdoid renal cell carcinoma

Nature Communications(2021)10.1038/s41467-021-21068-9

N/A

0.770DataRank · unranked

169 citations

David A. Braun, Sachet A. Shukla, Wenting Pan, Xīn Gào, Yue Hou +48 more

CTLA4 blockade abrogates KEAP1/STK11-related resistance to PD-(L)1 inhibitors

Nature(2024)10.1038/s41586-024-07943-7

N/A

0.769DataRank · unranked

168 citations

Haniel A. Araújo, Minh Truong, Yu Qian, Xin Sun, Ana Galán‐Cobo +95 more

Concurrent TP53 Mutations Facilitate Resistance Evolution in EGFR-Mutant Lung Adenocarcinoma

Journal of Thoracic Oncology(2022)10.1016/j.jtho.2022.02.011

N/A

0.764DataRank · unranked

162 citations

Emily S. Chambers, Tom Nguyen, Alexis Coolidge, Christine Lydon, Xiuning Le +6 more

Integrative clinical and molecular characterization of translocation renal cell carcinoma

Cell Reports(2022)10.1016/j.celrep.2021.110190

N/A

0.717DataRank · unranked

118 citations

Ananthan Sadagopan, Praful Ravi, Nebiyou Y. Metaferia, Jiao Li, Shatha AbuHammad +35 more

Mammalian SWI/SNF Complex Genomic Alterations and Immune Checkpoint Blockade in Solid Tumors

Cancer Immunology Research(2020)10.1158/2326-6066.cir-19-0866

N/A

0.657DataRank · unranked

79 citations

Amin H. Nassar, Wanling Xie, Ziad Bakouny, Jacob E. Berchuck, David A. Braun +27 more

Transcriptional profiling of primary prostate tumor in metastatic hormone-sensitive prostate cancer and association with clinical outcomes: correlative analysis of the E3805 CHAARTED trial

Annals of Oncology(2021)10.1016/j.annonc.2021.06.003

N/A

0.654DataRank · unranked

77 citations

Hsin-Chieh Huang, V. Wang, Yu‐Hui Chen, Felix Y. Feng, Robert B. Den +11 more

Germline Features Associated with Immune Infiltration in Solid Tumors

Cell Reports(2020)10.1016/j.celrep.2020.02.039

N/A

0.652DataRank · unranked

76 citations

Meng Xiao He, Matthew A. Reyna, Alexander Gusev, Saud H. AlDubayan, Eliezer M. Van Allen +2 more

Evaluation of predictive biomarkers for nivolumab in patients (pts) with metastatic clear cell renal cell carcinoma (mccRCC) from the CheckMate-025 (CM-025) trial.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.5023

N/A

0.599DataRank · unranked

12 citations

Opeyemi A. Jegede, Miriam Sant’Angelo, Sonia Moreno, David A. Braun, Megan Wind‐Rotolo +15 more

Clinical Efficacy and Molecular Response Correlates of the WEE1 Inhibitor Adavosertib Combined with Cisplatin in Patients with Metastatic Triple-Negative Breast Cancer

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-20-3089

N/A

0.596DataRank · unranked

52 citations

Tianyu Li, Tuulia Vallius, Jennifer L. Guerriero, Nabihah Tayob, Bose Kochupurakkal +17 more

Integrating molecular profiles into clinical frameworks through the Molecular Oncology Almanac to prospectively guide precision oncology

Nature Cancer(2021)10.1038/s43018-021-00243-3

N/A

0.574DataRank · unranked

45 citations

Nathanael D. Moore, Nicholas Moore, Eric Kofman, Saud H. AlDubayan, Alexander T. M. Cheung +14 more

Author Correction: Integrative molecular and clinical modeling of clinical outcomes to PD1 blockade in patients with metastatic melanoma

Nature Medicine(2020)10.1038/s41591-020-0975-4

N/A

0.564DataRank · unranked

12 citations

Bastian Schilling, Derek Liu, Antje Sucker, Elisabeth Livingstone, Livnat Jerby-Arnon +34 more

Genomic attributes of homology-directed DNA repair deficiency in metastatic prostate cancer

JCI Insight(2021)10.1172/jci.insight.152789

N/A

0.542DataRank · unranked

36 citations

Sayan Dasgupta, Payel Chatterjee, Ilsa M. Coleman, Gavin Ha, Lisa S. Ang +17 more

Intertumoral lineage diversity and immunosuppressive transcriptional programs in well-differentiated gastroenteropancreatic neuroendocrine tumors

Science Advances(2023)10.1126/sciadv.add9668

N/A

0.533DataRank · unranked

34 citations

Todd W. Dowrey, Carlos Villacorta Martin, Kevin Bi, Breanna Titchen, Shreya Johri +30 more

RAF1 amplification drives a subset of bladder tumors and confers sensitivity to MAPK-directed therapeutics

Journal of Clinical Investigation(2021)10.1172/jci147849

N/A

0.533DataRank · unranked

34 citations

Amruta S. Samant, Amin H. Nassar, Jonathan So, Elizabeth P. Garcia, Catherine R. Curran +13 more

Genomic mediators of acquired resistance to immunotherapy in metastatic melanoma

Cancer Cell(2025)10.1016/j.ccell.2025.01.009

N/A

0.524DataRank · unranked

32 citations

Mouadh Benamar, Jihye Park, Haley E. Sax, Giacomo Oliveira, Alice Bosma-Moody +10 more

Molecular markers of metastatic disease in KRAS-mutant lung adenocarcinoma

Annals of Oncology(2023)10.1016/j.annonc.2023.04.514

N/A

0.510DataRank · unranked

29 citations

Christine Lydon, Emily S. Chambers, Lynette M. Sholl, Mizuki Nishino, Ferdinandos Skoulidis +8 more

Ten challenges and opportunities in computational immuno-oncology

Journal for ImmunoTherapy of Cancer(2024)10.1136/jitc-2024-009721

N/A

0.471DataRank · unranked

11 citations

Alan D. Hutson, Mohammadhadi Khorrami, Vanessa D. Jönsson, Spencer R. Rosario, Jill S. Barnholtz‐Sloan +21 more

A phase 2 study of berzosertib (M6620) in combination with carboplatin compared with docetaxel in combination with carboplatin in metastatic castration-resistant prostate cancer.

Journal of Clinical Oncology(2021)10.1200/jco.2021.39.15_suppl.5034

N/A

0.461DataRank · unranked

8 citations

Wanling Xie, Edmund Folefac, Daniel Lee, Mamta Parikh, David J. Einstein +12 more

A patient-driven clinicogenomic partnership for metastatic prostate cancer

Cell Genomics(2022)10.1016/j.xgen.2022.100169

N/A

0.460DataRank · unranked

10 citations

Sara Balch, Lauren Sterlin, Beena Thomas, Sabrina Y. Camp, Michael Dunphy +27 more

Targeted cancer therapy induces APOBEC fuelling the evolution of drug resistance

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.18.423280

N/A

0.449DataRank · unranked

19 citations

Deborah R. Caswell, Natalie I. Vokes, Emily K. Law, Wei Wu, William Hill +43 more

Molecular features of exceptional response to neoadjuvant anti-androgen therapy in high-risk localized prostate cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.20.440657

N/A

0.349DataRank · unranked

7 citations

Alexander T. M. Cheung, Jett Crowdis, Jake R. Conway, Sabrina Y. Camp, Stephanie A. Wankowicz +15 more

Integration of Genomic Sequencing Drives Therapeutic Targeting of PDGFRA in T-Cell Acute Lymphoblastic Leukemia/Lymphoblastic Lymphoma

Clinical Cancer Research(2023)10.1158/1078-0432.ccr-22-2562

N/A

0.346DataRank · unranked

6 citations

Boris Dimitrov, Beth Apsel Winger, Angélica Sandoval‐Pérez, Amith Vikram Rangarajan, Nicole Ocasio-Martinez +35 more

Integrative Analysis of Germline Rare Variants in Clear and Non–clear Cell Renal Cell Carcinoma

European Urology Open Science(2024)10.1016/j.euros.2024.02.006

N/A

0.345DataRank · unranked

9 citations

Sabrina Y. Camp, Hoyin Chu, Ryan L. Collins, Riaz Gillani, Jihye Park +11 more

Tumor and immune reprogramming during immunotherapy in advanced renal cell carcinoma

Cancer Cell(2025)10.1016/j.ccell.2025.05.009

N/A

0.330DataRank · unranked

8 citations

Meng Xiao He, Ziad Bakouny, Abhay Kanodia, Sara Napolitano, Jingyi Wu +25 more

Urine Biopsy as Dynamic Biomarker to Enhance Clinical Staging of Bladder Cancer in Radical Cystectomy Candidates

JCO Precision Oncology(2024)10.1200/po.23.00362

N/A

0.262DataRank · unranked

3 citations

Henkel Valentine, David Liu, Michael J. Slifker, Costas D. Lallas, Edouard J. Trabulsi +24 more

Intertumoral lineage diversity and immunosuppressive transcriptional programs in well-differentiated gastroenteropancreatic neuroendocrine tumors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.08.515538

N/A

0.243DataRank · unranked

3 citations

Todd W. Dowrey, Carlos Villacorta Martin, Kevin Bi, Breanna Titchen, Shreya Johri +27 more

Somatic structural variants drive distinct modes of oncogenesis in melanoma

Journal of Clinical Investigation(2024)10.1172/jci177270

N/A

0.208DataRank · unranked

3 citations

Riaz Gillani, Jett Crowdis, Brendan Reardon, Jihye Park, Seunghun Han +5 more

Single-cell RNA-sequencing and -imaging of melanoma ecosystems reveals sources of resistance to immune checkpoint blockade.

Journal of Clinical Oncology(2018)10.1200/jco.2018.36.15_suppl.3074

N/A

0.208DataRank · unranked

1 citations

Livnat Jerby-Arnon, Asaf Rotem, Parin Shah, David Liu, Gao Zhang +13 more

Mutational footprint of platinum chemotherapy in a secondary thyroid cancer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.14.484002

N/A

0.191DataRank · unranked

2 citations

Θεοδώρα Παππά, Jake R. Conway, Jett Crowdis, Brendan Reardon, Felix Dietlein +16 more

Landscape and impact of germline pathogenic variants (PVs) in metastatic hormone sensitive prostate cancer (mHSPC): Ancillary study of E3805 CHAARTED.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.16_suppl.5082

N/A

0.165DataRank · unranked

2 citations

Tyler M Chinsky, M Cristian Vergara, Emily Grist, Gerhardt Attard, Eliezer M. Van Allen +3 more

Immunogenomic characterization of advanced clear cell renal cell carcinoma treated with PD-1 blockade.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.5010

N/A

0.165DataRank · unranked

2 citations

Yue Hou, Ziad Bakouny, Miriam Ficial, Miriam Sant’Angelo, Petra Ross‐Macdonald +15 more

Immune Spatial Organization Predicts Metastasis Risk in Aggressive Localized Prostate Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.15.654324

N/A

0.104DataRank · unranked

1 citations

Anwar Abdelnaser, Jeremiah A. Wala, Alexander J Haas, Alfred A. Barney, Eddy Saad +12 more

Association between molecular subtype membership or hypoxia-associated gene expression signatures and clinical outcomes in the CALGB 90601 (Alliance) phase 3 clinical trial of gemcitabine and cisplatin (GC) plus bevacizumab (B) or placebo (P).

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.4562

N/A

0.104DataRank · unranked

1 citations

Woonyoung Choi, Susan Halabi, Bin Luo, Hikmat Al‐Ahmadie, Jonathan E. Rosenberg +12 more

Phylogenetic analysis of longitudinal melanoma samples to reveal convergent evolution and markers of immunotherapy resistance.

Journal of Clinical Oncology(2018)10.1200/jco.2018.36.15_suppl.9581

N/A

0.104DataRank · unranked

1 citations

Gao Zhang, Alvin Shi, Benjamin Izar, Alexander Heyde, Gyulnara G. Kasumova +14 more

Mechanisms of Resistance to Oncogenic KRAS Inhibition in Pancreatic Cancer

Cancer Discovery(2024)10.1158/2159-8290.cd-24-0177

N/A

0DataRank · unranked

243 citations

Megan T. Hoffman, Laleh Abbassi, Ziyue Li, Francesca Paradiso, Brendan D. Parent +50 more

Perspectives of Oncologists on the Ethical Implications of Using Artificial Intelligence for Cancer Care

JAMA Network Open(2024)10.1001/jamanetworkopen.2024.4077

N/A

0DataRank · unranked

48 citations

Thomas Walsh, Jonathan M. Marron, Kenneth L. Kehl, Richard R. Sharp, Eliezer M. Van Allen +2 more

Impact of renal cell carcinoma molecular subtypes on immunotherapy and targeted therapy outcomes

Cancer Cell(2024)10.1016/j.ccell.2024.03.002

N/A

0DataRank · unranked

46 citations

Chris Labaki, Tejas Jammihal, Wanling Xie, Maxine Sun, Valisha Shah +19 more

Randomized Phase II Study Evaluating the Addition of Pembrolizumab to Radium-223 in Metastatic Castration-resistant Prostate Cancer

Cancer Immunology Research(2024)10.1158/2326-6066.cir-22-0306

N/A

0DataRank · unranked

36 citations

Lucia Kwak, Alexander Cheung, Kathryn M. Allaire, Jaqueline Marquez, David D. Yang +21 more

Epigenomic signatures of sarcomatoid differentiation to guide the treatment of renal cell carcinoma

Cell Reports(2024)10.1016/j.celrep.2024.114350

N/A

0DataRank · unranked

29 citations

Karl Semaan, Marc Eid, Ji-Heui Seo, Simon Garinet, Matthew P. Davidsohn +34 more

Biomarkers of pembrolizumab efficacy in advanced anal squamous cell carcinoma: analysis of a phase II clinical trial and a cohort of long-term responders

Journal for ImmunoTherapy of Cancer(2024)10.1136/jitc-2023-008436

N/A

0DataRank · unranked

13 citations

Harshabad Singh, Lestat R. Ali, Nora Horick, S. Jennifer Wang, Megan T. Hoffman +33 more

Toward a CRISPR-based mouse model of Vhl -deficient clear cell kidney cancer: Initial experience and lessons learned

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2408549121

N/A

0DataRank · unranked

10 citations

Wenhua Gao, Laura S. Schmidt, Kevin Bi, C. Ricketts, Vijyendra Ramesh +28 more

Germline polygenic risk scores are associated with immune gene expression signature and immune cell infiltration in breast cancer

The American Journal of Human Genetics(2024)10.1016/j.ajhg.2024.08.009

N/A

0DataRank · unranked

3 citations

Cheng Peng, Ina Skaara Brorson, Denise G O'Mahony, Rebecca L. Kelly, Yujing J. Heng +10 more

Rare germline structural variants increase risk for pediatric solid tumors

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.27.591484

N/A

0DataRank · unranked

1 citations

Ryan L. Collins, Jett Crowdis, Amanda Garza, Jill K. Jones, Mark Walker +13 more

HIF regulates multiple translated endogenous retroviruses: Implications for cancer immunotherapy

Cell(2025)10.1016/j.cell.2025.01.046

N/A

0DataRank · unranked

56 citations

David A. Braun, Karl R. Clauser, Vijyendra Ramesh, Nitin H. Shirole, Joseph E. Duke-Cohan +41 more

New horizons at the interface of artificial intelligence and translational cancer research

Cancer Cell(2025)10.1016/j.ccell.2025.03.018

N/A

0DataRank · unranked

38 citations

Eliezer M. Van Allen, Josephine Yates

Myeloid cells mediate interferon-driven resistance to immunotherapy in advanced renal cell carcinoma

Immunity(2025)10.1016/j.immuni.2025.10.013

N/A

0DataRank · unranked

8 citations

Soki Kashima, Sabrina Y. Camp, Kevin Meli, Eddy Saad, Breanna Titchen +14 more

Cellular reprogramming during anti-PD-1 and chemotherapy treatment in early-stage primary hormone receptor-positive breast cancer

Nature Communications(2025)10.1038/s41467-025-66659-y

N/A

0DataRank · unranked

2 citations

Adrienne G. Waks, Erica Pimenta, Breanna Titchen, Kevin Bi, Sabrina Y. Camp +16 more

Disruption of Microhomology-mediated End-joining in Ewing Sarcoma

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.06.651696

N/A

0DataRank · unranked

2 citations

Guangli Zhu, Jithma P. Abeykoon, Yutaro Tanaka, Huy Tien Nguyen, Yuna Hirohashi +14 more

Epigenetic dysregulation of metabolic programs mediates liposarcoma cell plasticity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.20.633920

N/A

0DataRank · unranked

1 citations

Amanda Garza, Sabrina Y. Camp, Jihye Park, Samantha E. Hoffman, Laura Valderrábano +17 more

Whole-slide multiplexed tissue imaging of prostate adenocarcinoma to investigate immune niches in high- versus low-grade tumors.

Journal of Clinical Oncology(2025)10.1200/jco.2025.43.5_suppl.224

N/A

0DataRank · unranked

0 citations

Jeremiah A. Wala, Brian Labadie, Aishwarya Atmakuri, Kiranj Chaudagar, Eamon Toye +6 more

Dissecting tumor cell programs through group biology estimation in clinical single-cell transcriptomics

Nature Communications(2025)10.1038/s41467-025-57377-6

N/A

0DataRank · unranked

0 citations

Kevin Bi, Breanna M. Titchen, Jingxin Fu, Jake R. Conway, Jett Crowdis +8 more

Segregating DNA lesions point to high selective advantage of tumor initiating cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.02.680094

N/A

0DataRank · unranked

0 citations

Maha Shady, Maria A Andrianova, Michael Chapman, Eliezer M. Van Allen, Shamil R. Sunyaev +1 more

Empirical Evaluation of Single-Cell Foundation Models for Predicting Cancer Outcomes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685892

N/A

0DataRank · unranked

0 citations

Ahmed Roman, Shreya Johri, Eliezer M. Van Allen, Haitham Elmarakeby

Evaluation of single-cell RNA profiling technologies using FFPE, fresh, and frozen ccRCC tumor specimens

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.25.690485

N/A

0DataRank · unranked

0 citations

Sabrina Y. Camp, Amanda Garza, Yashika Rustagi, Erica Pimenta, Erin Shannon +9 more

Table S1: Somatic Mutations from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

(2023)10.1158/2326-6066.22542492

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Learning Patient Similarity from Genomics for Precision Oncology

medRxiv(2025)10.64898/2025.12.17.25342480

N/A

0DataRank · unranked

0 citations

Brendan Reardon, Sharon Jiang, Erica Pimenta, Tess A. O’Meara, Jihye Park +5 more

Table S2: CRC risk and DNA repair genes evaluated for germline alterations from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

(2023)10.1158/2326-6066.22542489

Top 100%

0DataRank

Top 100%0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Supplementary Figures and Legends from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

(2023)10.1158/2326-6066.22542495

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Supplementary Figures and Legends from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

Figshare(2023)10.1158/2326-6066.22542495.v1

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Table S2: CRC risk and DNA repair genes evaluated for germline alterations from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

Figshare(2023)10.1158/2326-6066.22542489.v1

Top 100%

0DataRank

Top 100%0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Data from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

(2023)10.1158/2326-6066.c.6549951

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Table S1: Somatic Mutations from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

Figshare(2023)10.1158/2326-6066.22542492.v1

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Genomic Profiling of Smoldering Multiple Myeloma Identifies Patients at a High Risk of Disease Progression

Journal of Clinical Oncology(2020)10.1200/jco.20.00437

N/A

0DataRank · unranked

182 citations

Romanos Sklavenitis‐Pistofidis, Jihye Park, Robert Redd, Benny Zhitomirsky, Andrew Dunford +31 more

Characterizing diversity in the tumor-immune microenvironment of distinct subclasses of gastroesophageal adenocarcinomas

Annals of Oncology(2020)10.1016/j.annonc.2020.04.011

N/A

0DataRank · unranked

153 citations

Leonie K. de Klerk, Xiaoshu Xu, Tania Fleitas, Kevin X. Liu, YuhJong Liu +15 more

Identification of cancer driver genes based on nucleotide context

Nature Genetics(2020)10.1038/s41588-019-0572-y

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0DataRank · unranked

276 citations

Donate Weghorn, Amaro Taylor‐Weiner, André Richters, Brendan Reardon, David Liu +4 more

Inactivation of Fbxw7 Impairs dsRNA Sensing and Confers Resistance to PD-1 Blockade

Cancer Discovery(2020)10.1158/2159-8290.cd-19-1416

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0DataRank · unranked

71 citations

David Liu, Diana Miao, Bart Lutterbach, Alexander L. DeVine, Chenyu Lin +19 more

CoMut: visualizing integrated molecular information with comutation plots

Bioinformatics(2020)10.1093/bioinformatics/btaa554

N/A

0DataRank · unranked

70 citations

Meng Xiao He, Brendan Reardon, Eliezer M. Van Allen, Jett Crowdis

Cancer Moonshot Immuno-Oncology Translational Network (IOTN): accelerating the clinical translation of basic discoveries for improving immunotherapy and immunoprevention of cancer

Journal for ImmunoTherapy of Cancer(2020)10.1136/jitc-2020-000796

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0DataRank · unranked

13 citations

Andrew G. Sikora, Catherine M. Bollard, José R. Conejo-García, Carolina Colli Cruz, Shadmehr Demehri +21 more

Subtype Heterogeneity and Epigenetic Convergence in Neuroendocrine Prostate Cancer

(2020)10.1101/2020.09.13.291328

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0DataRank · unranked

21 citations

Yingtian Xie, Alba Font‐Tello, Klothilda Lim, Sudeepa Syamala, Xintao Qiu +30 more

Luminal B subtype as a predictive biomarker of docetaxel benefit for newly diagnosed metastatic hormone sensitive prostate cancer (mHSPC): A correlative study of E3805 CHAARTED.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.6_suppl.162

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0DataRank · unranked

18 citations

Victoria Wang, Yu‐Hui Chen, Felix Y. Feng, Robert B. Den, Gerhardt Attard +10 more

Randomized phase II study of olaparib with or without cediranib in men with metastatic castration-resistant prostate cancer (mCRPC).

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.6_suppl.111

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0DataRank · unranked

6 citations

Rana R. McKay, Mary‐Ellen Taplin, Nancy B. Davis, Paul Monk, Leonard J. Appleman +14 more

A phase II study of M6620 in combination with carboplatin compared with docetaxel in combination with carboplatin in metastatic castration-resistant prostate cancer.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.tps5597

N/A

0DataRank · unranked

3 citations

Wanling Xie, Mamta Parikh, Daniel Lee, Elizabeth R. Kessler, David J. Einstein +8 more

Integrative Molecular Characterization of Sarcomatoid and Rhabdoid Renal Cell Carcinoma Reveals Determinants of Poor Prognosis and Response to Immune Checkpoint Inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.121806

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0DataRank · unranked

3 citations

David A. Braun, Sachet A. Shukla, Wenting Pan, Xīn Gào, Yue Hou +47 more

CoMut: Visualizing integrated molecular information with comutation plots

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.18.997361

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0DataRank · unranked

2 citations

Meng Xiao He, Brendan Reardon, Eliezer M. Van Allen, Jett Crowdis

Soluble PD-L1 as a marker of progressive disease on nivolumab in kidney cancer.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.6_suppl.746

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0DataRank · unranked

1 citations

Petra Ross‐Macdonald, Sachet A. Shukla, David A. Braun, Linan Song, Eliseo Veras +7 more

Modeling differentially expressed genes in patient tumors to guide expression-based biomarker development.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.3627

N/A

0DataRank · unranked

0 citations

Meng He, Kevin Bi, Eliezer M. Van Allen, David Liu, Derek Liu

Clinical interpretation of integrative molecular profiles to guide precision cancer medicine

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.22.308833

N/A

0DataRank · unranked

0 citations

Nathaniel D Moore, Nicholas Moore, Eric Kofman, Saud H. AlDubayan, Alexander T. M. Cheung +14 more

A phase II study of M6620 in combination with carboplatin compared with docetaxel in combination with carboplatin in metastatic castration-resistant prostate cancer.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.6_suppl.tps252

N/A

0DataRank · unranked

0 citations

Wanling Xie, Mamta Parikh, Daniel Lee, Elizabeth R. Kessler, David J. Einstein +8 more

A survey of informatics approaches to whole-exome and whole-genome clinical reporting in the electronic health record

UNC Libraries(2020)10.17615/4zec-ff92

N/A

0DataRank · unranked

0 citations

Matthew S. Lebo, Samuel Aronson, Laura M. Amendola, Levi A. Garraway, Gail P. Jarvik +10 more

Processes and preliminary outputs for identification of actionable genes as incidental findings in genomic sequence data in the Clinical Sequencing Exploratory Research Consortium

UNC Libraries(2020)10.17615/x7nz-xc34

N/A

0DataRank · unranked

0 citations

Levi A. Garraway, Elizabeth T. DeChene, Heidi L. Rehm, Matthew C. Dulik, James P. Evans +12 more

Biologically informed deep neural network for prostate cancer discovery

Nature(2021)10.1038/s41586-021-03922-4

N/A

0DataRank · unranked

449 citations

Justin H. Hwang, Rand Arafeh, Jett Crowdis, Sydney Gang, David Liu +9 more

Discovery and Features of an Alkylating Signature in Colorectal Cancer

Cancer Discovery(2021)10.1158/2159-8290.cd-20-1656

N/A

0DataRank · unranked

80 citations

Rong Zhong, Koichiro Haruki, Yvonne Y. Li, Liam F. Spurr, Henry Lee-Six +14 more

Building Tools for Machine Learning and Artificial Intelligence in Cancer Research: Best Practices and a Case Study with the PathML Toolkit for Computational Pathology

Molecular Cancer Research(2021)10.1158/1541-7786.mcr-21-0665

N/A

0DataRank · unranked

47 citations

Ryan Carelli, Mohamed Omar, David Brundage, Ella Halbert, Jackson Nyman +6 more

Molecular features of exceptional response to neoadjuvant anti-androgen therapy in high-risk localized prostate cancer

Cell Reports(2021)10.1016/j.celrep.2021.109665

N/A

0DataRank · unranked

41 citations

Alexander T. M. Cheung, Jett Crowdis, Jake R. Conway, Sabrina Y. Camp, Stephanie A. Wankowicz +15 more

Nivolumab in combination with cabozantinib for metastatic triple-negative breast cancer: a phase II and biomarker study

npj Breast Cancer(2021)10.1038/s41523-021-00287-9

N/A

0DataRank · unranked

51 citations

Tanya E. Keenan, Tianyu Li, Nabihah Tayob, Lorenzo Trippa, Ricardo Pastorello +11 more

Molecular profile to cancer cell line matchmaking

Research Square(2021)10.21203/rs.3.pex-1539/v1

N/A

0DataRank · unranked

2 citations

Eliezer M. Van Allen, Brendan Reardon

Dissecting tumor cell programs through group biology estimation in clinical single-cell transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.22.465130

N/A

0DataRank · unranked

2 citations

Kevin Bi, Breanna M. Titchen, Jingxin Fu, Jake R. Conway, Jett Crowdis +8 more

A patient-driven clinicogenomic partnership through the Metastatic Prostate Cancer Project

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.09.451849

N/A

0DataRank · unranked

1 citations

Sara Balch, Lauren Sterlin, Beena Thomas, Sabrina Y. Camp, Michael Dunphy +27 more

CREB5 reprograms nuclear interactions to promote resistance to androgen receptor targeting therapies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.18.456892

N/A

0DataRank · unranked

1 citations

Rand Arafeh, Ji-Heui Seo, Sylvan C. Baca, Megan Ludwig, Taylor E. Arnoff +14 more

Germline predisposition to pediatric Ewing sarcoma is characterized by inherited pathogenic variants in DNA damage repair genes

The American Journal of Human Genetics(2022)10.1016/j.ajhg.2022.04.007

N/A

0DataRank · unranked

49 citations

Sabrina Y. Camp, Seunghun Han, Jill K. Jones, Hoyin Chu, Schuyler O’Brien +12 more

Patterns of structural variation define prostate cancer across disease states

JCI Insight(2022)10.1172/jci.insight.161370

N/A

0DataRank · unranked

28 citations

Minjeong Ko, Anna C. H. Hoge, Kelsey Luu, Yuzhen Liu, Magdalena L Russell +13 more

Patterns of Structural Variation Define Prostate Cancer Across Disease States

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.09.475586

N/A

0DataRank · unranked

4 citations

Minjeong Ko, Anna C. H. Hoge, Kelsey Luu, Yuzhen Liu, Magdalena L Russell +13 more

Germline predisposition to pediatric Ewing sarcoma is uniquely characterized by inherited pathogenic variants in DNA damage repair genes

medRxiv(2022)10.1101/2022.01.07.22268685

N/A

0DataRank · unranked

0 citations

Sabrina Y. Camp, Seunghun Han, Jill K. Jones, Schuyler O’Brien, Erin L. Young +11 more

Germline variants associated with immunotherapy-related adverse events

medRxiv(2022)10.1101/2022.04.10.22273627

N/A

0DataRank · unranked

0 citations

Sarah Abou Alaiwi, Wenxin Xu, Vivek Naranbhai, Amin H. Nassar, Ziad Bakouny +26 more

Expanding clinical actionability in individual patient profiles with the Molecular Oncology Almanac.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.3015

N/A

0DataRank · unranked

0 citations

Eliezer M. Van Allen, Brendan Reardon

Association of DNA damage repair (DDR) mutations (mts) and clinical outcomes in CALGB 90601 (Alliance).

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.4521

N/A

0DataRank · unranked

0 citations

Susan Halabi, Bin Luo, Jonathan E. Rosenberg, Woonyoung Choi, Hikmat Al‐Ahmadie +12 more

Spatially aware deep learning reveals tumor heterogeneity patterns that encode distinct kidney cancer states

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101189

N/A

0DataRank · unranked

39 citations

Thomas Denize, Ziad Bakouny, Chris Labaki, Breanna M. Titchen, Kevin Bi +13 more

Genomic Tumor Correlates of Clinical Outcomes Following Organ-Sparing Chemoradiation Therapy for Bladder Cancer

Clinical Cancer Research(2023)10.1158/1078-0432.ccr-23-0792

N/A

0DataRank · unranked

17 citations

Yuzhen Zhou, Keisuke Otani, Michael Drumm, Yukako Otani, Shulin Wu +17 more

A phase 1/2 study of combination olaparib and radium-223 in men with metastatic castration-resistant prostate cancer with bone metastases (COMRADE): A trial in progress.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.16_suppl.tps5110

N/A

0DataRank · unranked

2 citations

Wanling Xie, Archana Ajmera, Arlene Araneta, Christina Jamieson, Edmund Folefac +14 more

Integrative Analysis of Germline Rare Variants in Clear and Non-Clear Cell Renal Cell Carcinoma

medRxiv(2023)10.1101/2023.01.18.23284664

N/A

0DataRank · unranked

0 citations

Sabrina Y. Camp, Hoyin Chu, Ryan L. Collins, Riaz Gillani, Jihye Park +11 more

Data from Autocrine Canonical Wnt Signaling Primes Noncanonical Signaling through ROR1 in Metastatic Castration-Resistant Prostate Cancer

(2023)10.1158/0008-5472.c.6513813.v1

N/A

0DataRank · unranked

0 citations

Seiji Arai, Keshan Wang, Carla Calagua, Amanda R. Yuan, Larysa Poluben +12 more

Data from Clinical Efficacy and Molecular Response Correlates of the WEE1 Inhibitor Adavosertib Combined with Cisplatin in Patients with Metastatic Triple-Negative Breast Cancer

(2023)10.1158/1078-0432.c.6530060.v1

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0DataRank

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Tianyu Li, Tuulia Vallius, Jennifer L. Guerriero, Nabihah Tayob, Bose Kochupurakkal +17 more

Data from Clinical Efficacy and Molecular Response Correlates of the WEE1 Inhibitor Adavosertib Combined with Cisplatin in Patients with Metastatic Triple-Negative Breast Cancer

(2023)10.1158/1078-0432.c.6530060

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Tianyu Li, Tuulia Vallius, Jennifer L. Guerriero, Nabihah Tayob, Bose Kochupurakkal +17 more

Engagement of patient participation in genomics research by the Osteosarcoma and Leiomyosarcoma Count Me In Projects of the Cancer Moonshot funded PE-CGS Network.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.16_suppl.tps11588

N/A

0DataRank · unranked

0 citations

Diane M. Diehl, Carrie Cibulskis, Priscilla Merriam, Maeve Smart, Jordan Doucette +15 more

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