Federico E. Rey

Biochemistry, Genetics and Molecular BiologyMedicineNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.392Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification of sample mix-ups and mixtures in microbiome data in Diversity Outbred mice

G3 Genes Genomes Genetics(2021)10.1093/g3journal/jkab308

Top 46%

0.392DataRank

Top 46%7 citations

Lindsay L. Traeger, Mark P. Keller, Alan Attie, Federico E. Rey, Karl W. Broman +1 more

Papers

Driven by 47 papers — median percentile 54. Top paper: “A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors”.

A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors

Cell(2020)10.1016/j.cell.2020.02.016

N/A

0.985DataRank · unranked

709 citations

Prasenjit Prasad Saha, Nilaksh Gupta, Weifei Zhu, Kymberleigh A. Romano, Sarah M. Skye +14 more

Identification of sample mix-ups and mixtures in microbiome data in Diversity Outbred mice

G3 Genes Genomes Genetics(2021)10.1093/g3journal/jkab308

Top 46%

0.392DataRank

Top 46%7 citations

Lindsay L. Traeger, Mark P. Keller, Alan Attie, Federico E. Rey, Karl W. Broman +1 more

Gut microbiome compositional and functional features associate with Alzheimer’s disease pathology

medRxiv(2024)10.1101/2024.09.04.24313004

N/A

0.269DataRank · unranked

5 citations

Lora Khatib, Margo B. Heston, Amanda Hazel Dilmore, Jennifer S. Labus, Yuetiva Deming +19 more

Decoding the role of the arginine dihydrolase pathway in shaping human gut community assembly and health-relevant metabolites

Cell Systems(2025)10.1016/j.cels.2025.101292

N/A

0.104DataRank · unranked

1 citations

Yu-Yu Cheng, Jaron Thompson, Zhichao Zhou, Eugenio I. Vivas, Matthew F. Warren +7 more

Gut microbiome variation modulates the effects of dietary fiber on host metabolism

Microbiome(2021)10.1186/s40168-021-01061-6

N/A

0DataRank · unranked

180 citations

Qilin Hong, Tzu-Wen Cross, Evan R. Hutchison, Jessica Han, Sydney P. Thomas +6 more

Dominant Bacterial Phyla from the Human Gut Show Widespread Ability To Transform and Conjugate Bile Acids

mSystems(2021)10.1128/msystems.00805-21

N/A

0DataRank · unranked

168 citations

Kelsey L. Barrett, Robert L. Kerby, Q. Zhang, Lea E. Cattaneo, David Stevenson +3 more

The microbial gbu gene cluster links cardiovascular disease risk associated with red meat consumption to microbiota l-carnitine catabolism

Nature Microbiology(2021)10.1038/s41564-021-01010-x

N/A

0DataRank · unranked

120 citations

Kymberleigh A. Romano, Matthew F. Copeland, David B. Cody, Weifei Zhu, Rachel Galvez +28 more

Polysaccharide utilization loci in Bacteroides determine population fitness and community-level interactions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.12.448201

N/A

0DataRank · unranked

7 citations

Yili Qian, Zhichao Zhou, Sarah Ertmer, Eugenio I. Vivas, Freeman Lan +4 more

A secondary metabolite drives intraspecies antagonism in a gut symbiont that is inhibited by cell wall acetylation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.11.448121

N/A

0DataRank · unranked

2 citations

Jee‐Hwan Oh, Restituto Tocmo, Deepa Acharya, Shenwei Zhang, Theresa Astmann +11 more

A secondary metabolite drives intraspecies antagonism in a gut symbiont that is inhibited by cell-wall acetylation

Cell Host & Microbe(2022)10.1016/j.chom.2022.03.033

N/A

0DataRank · unranked

26 citations

Jee‐Hwan Oh, Restituto Tocmo, Deepa Acharya, Shenwei Zhang, Theresa J. Astmann +11 more

Role of gut microbe-derived metabolites in cardiometabolic diseases: Systems based approach

Molecular Metabolism(2022)10.1016/j.molmet.2022.101557

N/A

0DataRank · unranked

21 citations

Rubén Aquino-Martínez, Evan R. Hutchison, Hooman Allayee, Aldons J. Lusis, Federico E. Rey +1 more

18F-SynVesT-1 PET/MR Imaging of the Effect of Gut Microbiota on Synaptic Density and Neurite Microstructure: A Preclinical Pilot Study

Frontiers in Radiology(2022)10.3389/fradi.2022.895088

N/A

0DataRank · unranked

5 citations

Ali Pirasteh, James Z. Wang, Tyler Bradshaw, Justin J. Jeffery, Brian R. Barnett +6 more

Vocal fold mucus layer: Comparison of histological protocols for visualization in mice

Laryngoscope Investigative Otolaryngology(2022)10.1002/lio2.743

N/A

0DataRank · unranked

8 citations

Daniel Robbins, Federico E. Rey, Susan L. Thibeault, Ran An

Gut microbiota bacterial strain richness is species specific and limits therapeutic engraftment

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.01.514782

N/A

0DataRank · unranked

2 citations

Varun Aggarwala, Ilaria Mogno, Craig Haifer, Zhihua Li, Joseph Eggers +15 more

Lectin-Seq: a method to profile lectin-microbe interactions in native communities

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.14.520458

N/A

0DataRank · unranked

2 citations

Christine R. Isabella, Rebecca L. Walker, Dallis Sergio, Tony Gaca, Smrithi Raman +13 more

Gut bacterial metabolism contributes to host global purine homeostasis

Cell Host & Microbe(2023)10.1016/j.chom.2023.05.011

N/A

0DataRank · unranked

213 citations

Robert L. Kerby, Qijun Zhang, Meenakshi Pradhan, Margarete Mehrabian, Aldons J. Lusis +4 more

Gut microbiome responds to alteration in female sex hormone status and exacerbates metabolic dysfunction

Gut Microbes(2023)10.1080/19490976.2023.2295429

N/A

0DataRank · unranked

74 citations

Abigayle M. R. Simpson, Ching‐Yen Lin, Natasha M. Hottmann, Aadra P. Bhatt, Samuel J. Pellock +9 more

Gut butyrate-producers confer post-infarction cardiac protection

Nature Communications(2023)10.1038/s41467-023-43167-5

N/A

0DataRank · unranked

65 citations

Yen-Wen Liu, Kuan‐Cheng Chang, Yen‐Wen Wu, Yi‐Ming Chen, Yu-Kai Chao +27 more

Gut inflammation associated with age and Alzheimer’s disease pathology: a human cohort study

Scientific Reports(2023)10.1038/s41598-023-45929-z

N/A

0DataRank · unranked

57 citations

Kendra L. Hanslik, Katie R. Zarbock, Sandra Harding, Nancy J. Davenport‐Sis, Robert L. Kerby +17 more

Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut

Nature Microbiology(2023)10.1038/s41564-023-01326-w

N/A

0DataRank · unranked

48 citations

Vanessa Linke, Katherine A. Overmyer, Lindsay L. Traeger, Kota Kasahara, Ian Miller +25 more

Microbe-derived uremic solutes enhance thrombosis potential in the host

mBio(2023)10.1128/mbio.01331-23

N/A

0DataRank · unranked

20 citations

Masanori Funabashi, Xinmin S. Li, Mohammed Dwidar, Naseer Sangwan, Sarah M. Skye +11 more

Dissecting the impact of dietary fiber type on atherosclerosis in mice colonized with different gut microbial communities

npj Biofilms and Microbiomes(2023)10.1038/s41522-023-00402-7

N/A

0DataRank · unranked

24 citations

Kazuyuki Kasahara, Qijun Zhang, Eugenio I. Vivas, Tzu-Wen Cross, Federico E. Rey +1 more

Transcriptional analysis reveals that the intracellular lipid accumulation impairs gene expression profiles involved in insulin response-associated cardiac functionality

Scientific Reports(2023)10.1038/s41598-023-35951-6

N/A

0DataRank · unranked

3 citations

María Constanza Paz, Federico E. Rey, Marı́a C. Sánchez, Vicenta Llorente‐Cortés, Gustavo A. Chiabrando +2 more

Gut microbiota and diet matrix modulate the effects of the flavonoid quercetin on atherosclerosis

Research Square(2023)10.21203/rs.3.rs-2431147/v1

N/A

0DataRank · unranked

9 citations

Kazuyuki Kasahara, Robert L. Kerby, Tzu-Wen Cross, Jessica Everhart, Colin D. Kay +3 more

Shaping human gut community assembly and butyrate production by controlling the arginine dihydrolase pathway

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.10.523442

N/A

0DataRank · unranked

2 citations

Yu‐Yu Cheng, Jaron Thompson, Zhichao Zhou, Eugenio I. Vivas, Matthew F. Warren +4 more

Dissecting the impact of dietary fiber type on atherosclerosis in mice colonized with different gut microbial communities

Research Square(2023)10.21203/rs.3.rs-2429283/v1

N/A

0DataRank · unranked

1 citations

Evan R. Hutchison, Kazuyuki Kasahara, Qijun Zhang, Eugenio I. Vivas, Tzu-Wen Cross +1 more

Transcriptional analysis reveals that the intracellular lipid accumulation impairs gene expression profiles involved in insulin response-associated cardiac functionality

Research Square(2023)10.21203/rs.3.rs-2688729/v1

N/A

0DataRank · unranked

1 citations

María Constanza Paz, Federico E. Rey, Marı́a C. Sánchez, Vicenta Llorente‐Cortés, Gustavo A. Chiabrando +2 more

Indole-3-Propionic Acid Protects Against Heart Failure With Preserved Ejection Fraction

Circulation Research(2024)10.1161/circresaha.123.322381

N/A

0DataRank · unranked

120 citations

Yen Chin Koay, Calvin Pan, Zhiqiang Zhou, W. H. Wilson Tang, Jennifer Wilcox +11 more

Gut microbiota strain richness is species specific and affects engraftment

Nature(2024)10.1038/s41586-024-08242-x

N/A

0DataRank · unranked

57 citations

Varun Aggarwala, Ilaria Mogno, Craig Haifer, Zhihua Li, Joseph Eggers +22 more

Single-cell view into the role of microbiota shaping host immunity in the larynx

iScience(2024)10.1016/j.isci.2024.110156

N/A

0DataRank · unranked

14 citations

Zijian Ni, Elliott Xie, Federico E. Rey, Christina Kendziorski, Susan L. Thibeault +1 more

Relationships and Mendelian Randomization of Gut Microbe-Derived Metabolites with Metabolic Syndrome Traits in the METSIM Cohort

Metabolites(2024)10.3390/metabo14030174

N/A

0DataRank · unranked

8 citations

Holli A. DeVon, Rita M. Cantor, Arjen J. Cupido, Calvin Pan, Sung Min Ha +8 more

11-Plex DiLeu Isobaric Labeling Enables Quantitative Assessment of Brain Region Protein Association Networks Impacted by the Gut Microbiome

Analytical Chemistry(2024)10.1021/acs.analchem.3c05327

N/A

0DataRank · unranked

3 citations

Zihui Li, Yatao Shi, Yusi Cui, Junfeng Huang, Dustin C. Frost +4 more

Age and sex-related variations in murine laryngeal microbiota

PLoS ONE(2024)10.1371/journal.pone.0300672

N/A

0DataRank · unranked

4 citations

Anumitha Venkatraman, John Binns, Callie Saric, Federico E. Rey, Susan L. Thibeault +1 more

Contribution of Streptococcus pseudopneumoniae and Streptococcus salivarius to vocal fold mucosal integrity and function

Disease Models & Mechanisms(2024)10.1242/dmm.050670

N/A

0DataRank · unranked

3 citations

Madhu Gowda, Jessica M. Fernandez, Stephanie M. Bartley, Anumitha Venkatraman, Federico E. Rey +2 more

The gut microbiome modulates the impact of Anaerobutyricum soehngenii supplementation on glucose homeostasis in mice

Research Square(2024)10.21203/rs.3.rs-4324489/v1

N/A

0DataRank · unranked

4 citations

Mei‐I Yen, Hubert W. Peng, Chris R. Davis, Eugenio I. Vivas, Michael M. Tallon +6 more

Gut microbes modulate the effects of the flavonoid quercetin on atherosclerosis

npj Biofilms and Microbiomes(2025)10.1038/s41522-024-00626-1

N/A

0DataRank · unranked

31 citations

Robert L. Kerby, Rubén Aquino-Martínez, Abigail H. Evered, Tzu-Wen Cross, Jessica Everhart +6 more

Gut microbiome compositional and functional features associate with Alzheimer's disease pathology

Alzheimer s & Dementia(2025)10.1002/alz.70417

N/A

0DataRank · unranked

14 citations

Lora Khatib, Margo B. Heston, Amanda Hazel Dilmore, Jennifer S. Labus, Yuetiva Deming +17 more

Gut microbiota–derived metabolite trimethylamine N-oxide alters the host epigenome through inhibition of S-adenosylhomocysteine hydrolase

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110521

N/A

0DataRank · unranked

11 citations

Federico E. Rey, John M. Denu, Jessica Han

Fecal short‐chain fatty acids vary by sex and amyloid status

Alzheimer s & Dementia(2025)10.1002/alz.70877

N/A

0DataRank · unranked

5 citations

Qijun Zhang, Margo B. Heston, Jea Woo Kang, Sandra Harding, Nancy J. Davenport‐Sis +29 more

GPR41 deficiency alters the gut microbiota-bile acid axis, reduces ileal expression of Npc1l1 , and attenuates hypercholesterolemia in male mice

Gut Microbes(2025)10.1080/19490976.2025.2598957

N/A

0DataRank · unranked

4 citations

Jillella Mallikarjun, Jungick Byun, Lauren N. Lucas, Kazuyuki Kasahara, Michael M. Tallon +7 more

Effects of psychosocial stress on laryngeal microbiology and epithelial barrier integrity

Scientific Reports(2025)10.1038/s41598-025-10170-3

N/A

0DataRank · unranked

1 citations

Katelyn Jacobs, John Binns, Ran An, Federico E. Rey, Susan L. Thibeault +1 more

Systems genetics uncovers associations among host amylase locus, gut microbiome, and metabolic traits in mice

Microbiome(2025)10.1186/s40168-025-02093-y

N/A

0DataRank · unranked

2 citations

Evan R. Hutchison, Calvin Pan, Matthew F. Warren, Mark P. Keller, Alan Attie +3 more

Investigation of Bile Salt Hydrolase Activity in Human Gut Bacteria Reveals Production of Conjugated Secondary Bile Acids

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.16.633392

N/A

0DataRank · unranked

11 citations

Jillella Mallikarjun, Lea E. Cattaneo, Bhavana Gangwar, Qijun Zhang, Robert L. Kerby +4 more

CD103 expression distinguishes subpopulations of naïve CD8+ T cells that are modulated by the microbiome and are pre-programmed to different memory phenotypes 3964

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.1705

N/A

0DataRank · unranked

0 citations

Brock Bakke, Hong-Tae Park, Thomas Cleven, Cynthia Pryde-Aguilar, Federico E. Rey +2 more

Selective Bacterial Colonization of the Murine Larynx in a Gnotobiotic Model

Frontiers in Microbiology(2020)10.3389/fmicb.2020.594617

N/A

0DataRank · unranked

13 citations

Madhu Gowda, Federico E. Rey, Susan L. Thibeault, Ran An

Effects of Smoking and Smoking Cessation on the Intestinal Microbiota

medRxiv(2020)10.1101/2020.07.11.20151480

N/A

0DataRank · unranked

11 citations

Tzu-Wen Cross, Claudia E. Korcarz, Kristin Hansen, Sofía M. Murga-Garrido, Stanley L. Hazen +5 more

Gut Microbiome Variation Modulates the Effects of Dietary Fiber on Host Metabolism

Research Square(2020)10.21203/rs.3.rs-97357/v1

N/A

0DataRank · unranked

5 citations

Qilin Hong, Tzu-Wen Cross, Evan R. Hutchison, Jessica Han, Sydney P. Thomas +6 more

Federico E. Rey

Indexed papers

Top data-sharing exemplar

Papers