Hong‐Wen Deng

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.9Author DataRank

Indexed papers

11in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 11 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Multi-omics Data Integration for Identifying Osteoporosis Biomarkers and Their Biological Interaction and Causal Mechanisms

iScience(2020)10.1016/j.isci.2020.100847

Top 13%

1.6DataRank

Top 13%60 citations

Fangtang Yu, Kuan‐Jui Su, Qi Zhao, Lan Zhang, Chao Xu +8 more

Papers

Driven by 123 papers — median percentile 53. Top paper: “Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images”.

Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images

Nature Communications(2021)10.1038/s41467-021-26643-8

N/A

4.7DataRank · unranked

142 citations

Kai Sun, Chao Xu, Xinghua Shi, Chong Wu, Ting Xie +6 more

Meta-Analysis of Genome-Wide Scans Provides Evidence for Sex- and Site-Specific Regulation of Bone Mass

Journal of Bone and Mineral Research(2007)10.1359/jbmr.060806

N/A

4.5DataRank · unranked

168 citations

Mandy Y Ng, Pak C. Sham, Elias Zintzaras, Saskia P. Hagenaars, Hong-Wen Deng +31 more

Multi-omics Data Integration for Identifying Osteoporosis Biomarkers and Their Biological Interaction and Causal Mechanisms

iScience(2020)10.1016/j.isci.2020.100847

Top 13%

1.6DataRank

Top 13%60 citations

Fangtang Yu, Kuan‐Jui Su, Qi Zhao, Lan Zhang, Chao Xu +8 more

Genome-wide meta-analysis of alcohol use disorder in East Asians

Neuropsychopharmacology(2022)10.1038/s41386-022-01265-w

Top 18%

1.1DataRank

Top 18%38 citations

Rasmon Kalayasiri, Yan Sun, Yaira Z. Nuñez, Hong‐Wen Deng, Xiang‐Ding Chen +10 more

An autoencoder-based deep learning method for genotype imputation

Frontiers in Artificial Intelligence(2022)10.3389/frai.2022.1028978

N/A

0.827DataRank · unranked

21 citations

Jonathan Greenbaum, Joseph Luttrell, Weihua Zhou, Chong Wu, Zhe Luo +11 more

Pathway-based metabolomics study of sarcopenia-related traits in two US cohorts

Aging(2022)10.18632/aging.203926

Top 25%

0.821DataRank

Top 25%16 citations

Hui Shen, Jiawang Liu, Chi‐Yang Chiu, Kuan‐Jui Su, Qing Tian +6 more

Stereo-seq of the prefrontal cortex in aging and Alzheimer’s disease

Nature Communications(2025)10.1038/s41467-024-54715-y

Top 25%

0.798DataRank

Top 25%42 citations

Mohammad Haeri, Xiao Zhang, Yisu Li, Anqi Liu, Di Wu +12 more

Mapping the spatial atlas of the human bone tissue integrating spatial and single-cell transcriptomics

Nucleic Acids Research(2025)10.1093/nar/gkae1298

N/A

0.796DataRank · unranked

29 citations

Yisu Li, Chuan Qiu, Binghao Zou, Yun Gong, Xiao Zhang +12 more

Accurate diagnosis of colorectal cancer based on histopathology images using artificial intelligence

BMC Medicine(2021)10.1186/s12916-021-01942-5

N/A

0.776DataRank · unranked

175 citations

Gang Yu, C. Xu, Xiang‐He Meng, Jing Zhou, Cheng Zheng +47 more

A multiethnic whole genome sequencing study to identify novel loci for bone mineral density

Human Molecular Genetics(2021)10.1093/hmg/ddab305

Top 28%

0.729DataRank

Top 28%35 citations

Kuan‐Jui Su, Xiao Zhang, Yong Liu, Anqi Liu, Lan‐Juan Zhao +5 more

A Review of Integrative Imputation for Multi-Omics Datasets

Frontiers in Genetics(2020)10.3389/fgene.2020.570255

N/A

0.727DataRank · unranked

126 citations

Jonathan Greenbaum, Joseph Luttrell, Weihua Zhou, Chong Wu, Hui Shen +4 more

Quantification of aminobutyric acids and their clinical applications as biomarkers for osteoporosis

Communications Biology(2020)10.1038/s42003-020-0766-y

N/A

0.672DataRank · unranked

87 citations

Liangqiao Bian, Chenglin Mo, Hui Shen, Lan‐Juan Zhao, Kuan‐Jui Su +9 more

Autosurv: interpretable deep learning framework for cancer survival analysis incorporating clinical and multi-omics data

npj Precision Oncology(2024)10.1038/s41698-023-00494-6

N/A

0.644DataRank · unranked

72 citations

Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu‐Ping Wang +2 more

BERT6mA: prediction of DNA N6-methyladenine site using deep learning-based approaches

Briefings in Bioinformatics(2022)10.1093/bib/bbac053

N/A

0.609DataRank · unranked

57 citations

Md Mehedi Hasan, Hong‐Wen Deng, Hiroyuki Kurata, Sho Tsukiyama

Novel strategy for disease risk prediction incorporating predicted gene expression and DNA methylation data: a multi‐phased study of prostate cancer

Cancer Communications(2021)10.1002/cac2.12205

N/A

0.597DataRank · unranked

22 citations

Jingjing Zhu, Austin King, Xiaoran Tong, Qing Lu, Jong Y. Park +13 more

Associations of physical activity with sarcopenia and sarcopenic obesity in middle-aged and older adults: the Louisiana osteoporosis study

BMC Public Health(2022)10.1186/s12889-022-13288-5

N/A

0.542DataRank · unranked

36 citations

Tao Xu, Zenong Yin, Sara Espinoza, Yiqiong Xie, Caleb Gentry +6 more

Drug Repurposing for COVID-19 Treatment by Integrating Network Pharmacology and Transcriptomics

Pharmaceutics(2021)10.3390/pharmaceutics13040545

N/A

0.505DataRank · unranked

28 citations

Jiachen Liu, Shuang Liang, Xiang‐He Meng, Jonathan Greenbaum, Hong‐Mei Xiao +3 more

ST-V-Net: incorporating shape prior into convolutional neural networks for proximal femur segmentation

Complex & Intelligent Systems(2021)10.1007/s40747-021-00427-5

N/A

0.494DataRank · unranked

26 citations

Joyce H. Keyak, Jinshan Tang, Tadashi Kaneko, Sundeep Khosla, Shreyasee Amin +8 more

A transcriptome-wide association study to detect novel genes for volumetric bone mineral density

Bone(2021)10.1016/j.bone.2021.116106

N/A

0.439DataRank · unranked

5 citations

Yong Liu, Kuan‐Jui Su, Jonathan Greenbaum, Yuntong Bai, Qing Tian +4 more

Identification of blood protein biomarkers associated with prostate cancer risk using genetic prediction models: analysis of over 140,000 subjects

Human Molecular Genetics(2023)10.1093/hmg/ddad139

N/A

0.416DataRank · unranked

15 citations

Jingjing Zhu, Shuai Liu, Dalia Ghoneim, Praveen Surendran, Tao Liu +8 more

A gene-level methylome-wide association analysis identifies novel Alzheimer’s disease genes

Bioinformatics(2021)10.1093/bioinformatics/btab045

N/A

0.396DataRank · unranked

13 citations

Jonathan R. Bradley, Yanming Li, Lang Wu, Hong‐Wen Deng, Chong Wu

Three pleiotropic loci associated with bone mineral density and lean body mass

Molecular Genetics and Genomics(2020)10.1007/s00438-020-01724-3

N/A

0.395DataRank · unranked

5 citations

Shanshan Zhang, Shu Ran, Yu Liu, Hong Zhang, Xiaolin Yang +7 more

Two novel pleiotropic loci associated with osteoporosis and abdominal obesity

Human Genetics(2020)10.1007/s00439-020-02155-1

N/A

0.385DataRank · unranked

12 citations

Xiaolin Yang, Hong Zhang, Zijia Zhang, Xin‐Tong Wei, Guijuan Feng +9 more

Genome-wide Meta-analysis of Alcohol Use Disorder in East Asians

medRxiv(2021)10.1101/2021.09.17.21263732

Top 47%

0.382DataRank

Top 47%5 citations

Rasmon Kalayasiri, Yan Sun, Yaira Z. Nuñez, Hong‐Wen Deng, Xiang‐Ding Chen +10 more

Bivariate genome‐wide association analysis identified three pleiotropic loci underlying osteoporosis and obesity

Clinical Genetics(2020)10.1111/cge.13692

Top 48%

0.371DataRank

Top 48%4 citations

Xin‐Tong Wei, Guijuan Feng, Hong Zhang, Xiaolin Yang, Shanshan Zhang +6 more

ImageNomer: developing an fMRI and omics visualization tool to detect racial bias in functional connectivity

PubMed(2023)10.36227/techrxiv.21992006.v1

N/A

0.312DataRank · unranked

7 citations

Grant T. Daly, Yu‐Ping Wang, Anqi Liu, Hui Shen, Hong‐Wen Deng +2 more

Identification of genetic loci shared between Alzheimer’s disease and hypertension

Molecular Genetics and Genomics(2022)10.1007/s00438-022-01949-4

N/A

0.312DataRank · unranked

7 citations

Hong‐Wen Deng, Jonathan Greenbaum, Megan Sullivan

Single-cell RNA sequencing reveals in vivo osteoimmunology interactions between the immune and skeletal systems

Frontiers in Endocrinology(2023)10.3389/fendo.2023.1107511

N/A

0.312DataRank · unranked

7 citations

Jonathan Greenbaum, Chuan Qiu, Yun Gong, Zun Wang, Xu Lin +11 more

Proteome-wide association study and functional validation identify novel protein markers for pancreatic ductal adenocarcinoma

GigaScience(2024)10.1093/gigascience/giae012

N/A

0.312DataRank · unranked

7 citations

Ke Wu, Shuai Liu, Alexandra Masca, Hua Zhong, Tai Yang +15 more

CryoETGAN: Cryo-Electron Tomography Image Synthesis via Unpaired Image Translation

Frontiers in Physiology(2022)10.3389/fphys.2022.760404

N/A

0.312DataRank · unranked

7 citations

Chengkun Li, Xiangrui Zeng, Haocheng Wei, Hong‐Wen Deng, Jing Zhang +2 more

A variability in response of osteoclasts to zoledronic acid is mediated by smoking-associated modification in the DNA methylome

Clinical Epigenetics(2023)10.1186/s13148-023-01449-1

N/A

0.292DataRank · unranked

6 citations

Anaïs Marie Julie Møller, Chuan Qiu, Jonna Skov Madsen, Hui Shen, Troels Bechmann +6 more

A staged approach using machine learning and uncertainty quantification to predict the risk of hip fracture

Bone Reports(2024)10.1016/j.bonr.2024.101805

N/A

0.292DataRank · unranked

6 citations

Kristoffer Larsen, Nancy E. Lane, Zhao Chen, Kuan‐Jui Su, Joyce H. Keyak +6 more

A new hip fracture risk index derived from FEA-computed proximal femur fracture loads and energies-to-failure

Osteoporosis International(2024)10.1007/s00198-024-07015-6

N/A

0.292DataRank · unranked

6 citations

Joyce H. Keyak, Sigurður Sigurðsson, Zhao Chen, Weihua Zhou, Anqi Liu +5 more

omicsMIC: a comprehensive benchmarking platform for robust comparison of imputation methods in mass spectrometry-based omics data

NAR Genomics and Bioinformatics(2024)10.1093/nargab/lqae071

N/A

0.292DataRank · unranked

6 citations

Jiadong Ji, Kuan‐Jui Su, Chuan Qiu, Qing Tian, Lan‐Juan Zhao +5 more

Identifying Pleiotropic SNPs Associated With Femoral Neck and Heel Bone Mineral Density

Frontiers in Genetics(2020)10.3389/fgene.2020.00772

N/A

0.292DataRank · unranked

6 citations

Xiang‐He Meng, Xiao Zhang, Lin Xu, Qiang Zhang, Ri-Li Jiang +4 more

Social and Behavior Factors of Alzheimer's Disease and Related Dementias: A National Study in the U.S.

American Journal of Preventive Medicine(2023)10.1016/j.amepre.2023.11.017

N/A

0.292DataRank · unranked

6 citations

Elizabeth Vásquez, Edward Valachovic, Lifang Hou, Yinan Zheng, Hua Xu +7 more

CLCLSA: Cross-omics Linked embedding with Contrastive Learning and Self Attention for multi-omics integration with incomplete multi-omics data

Research Square(2023)10.21203/rs.3.rs-2768563/v1

N/A

0.281DataRank · unranked

4 citations

Zhao Chen, Anqi Liu, Xiao Zhang, Xuewei Cao, Zhengming Ding +4 more

Identification of PDXDC1 as a novel pleiotropic susceptibility locus shared between lumbar spine bone mineral density and birth weight

Journal of Molecular Medicine(2022)10.1007/s00109-021-02165-0

N/A

0.243DataRank · unranked

3 citations

Shidi Hu, Lin Xu, Xiang‐He Meng, Xiao Wang, Yinhua Zhang +11 more

ImageNomer: Description of a functional connectivity and omics analysis tool and case study identifying a race confound

Neuroimage Reports(2023)10.1016/j.ynirp.2023.100191

N/A

0.241DataRank · unranked

4 citations

Grant T. Daly, Ziyu Zhou, Anqi Liu, Hui Shen, Hong‐Wen Deng +2 more

Repurposing Acebutolol for Osteoporosis Treatment: Insights From Multi‐Omics and Multi‐Modal Data Analysis

Clinical Pharmacology & Therapeutics(2025)10.1002/cpt.3738

N/A

0.208DataRank · unranked

3 citations

Hui Shen, Jonathan Greenbaum, Qiaorong Yi, Shuang Liang, Yue Zhang +17 more

A systematic dissection of human primary osteoblasts in vivo at single-cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.12.091975

N/A

0.208DataRank · unranked

3 citations

Junxiao Yang, Xiao‐Hua Li, Cui Zhou, Yu Chen, Zun Wang +17 more

Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study

Scientific Reports(2020)10.1038/s41598-020-61272-z

N/A

0.208DataRank · unranked

3 citations

Yu‐Xue Zhang, Lu Liu, Zixuan Jiang, Xiao He, Yu Liu +6 more

Network-Based Approach to Repurpose Approved Drugs for COVID-19 by Integrating GWAS and Text Mining Data

Processes(2022)10.3390/pr10020326

N/A

0.208DataRank · unranked

3 citations

Hui Li, Danyang Liu, Wan‐Qiang Lv, Shengran Wang, Jiachen Liu +5 more

Somatomotor-Visual Resting State Functional Connectivity Increases After Two Years in the UK Biobank Longitudinal Cohort

Figshare(2023)10.36227/techrxiv.23960856.v2

Top 72%

0.107DataRank

Top 72%1 citations

Kuan‐Jui Su, Qing Tian, Hui Shen, Hong‐Wen Deng, Yu‐Ping Wang +1 more

A New Hip Fracture Risk Index Derived from FEA-Computed Proximal Femur Fracture Loads and Energies-to-Failure

arXiv (Cornell University)(2022)10.48550/arxiv.2210.01032

N/A

0.104DataRank · unranked

1 citations

Joyce H. Keyak, Sigurður Sigurðsson, Zhao Chen, Weihua Zhou, Anqi Liu +5 more

MIMOSA: a resource consisting of improved methylome prediction models increases power to identify DNA methylation-phenotype associations

Epigenetics(2024)10.1080/15592294.2024.2370542

N/A

0.104DataRank · unranked

1 citations

Zichen Zhang, Hong‐Wen Deng, Lang Wu, Chong Wu, Hunter J. Melton

Novel Pathological Mechanisms Revealed by Spatial Transcriptomic Analysis of Hippocampus in Aged Control, Primary Age-Related Tauopathy, and Alzheimer’s Disease

Research Square(2025)10.21203/rs.3.rs-7303622/v1

N/A

0.104DataRank · unranked

1 citations

Yun Gong, Qi‐Lei Zhang, Di Wu, Anqi Liu, Tianying Li +9 more

Identifiability in Functional Connectivity May Unintentionally Inflate Prediction Results

PubMed(2023)10.36227/techrxiv.23826441.v1

N/A

0.104DataRank · unranked

1 citations

Gang Qu, Kuan‐Jui Su, Anqi Liu, Hui Shen, Hong‐Wen Deng +2 more

Gut microbiota impacts bone via B.vulgatus -valeric acid-related pathways

medRxiv(2020)10.1101/2020.03.16.20037077

N/A

0.104DataRank · unranked

1 citations

Hong‐Mei Xiao, Hui Li, Wan‐Qiang Lv, Jonathan Greenbaum, Sijie Yuan +27 more

Identifiability in Functional Connectivity May Unintentionally Inflate Prediction Results

medRxiv(2023)10.1101/2023.08.02.23293565

N/A

0DataRank · unranked

5 citations

Gang Qu, Kuan‐Jui Su, Anqi Liu, Hui Shen, Hong‐Wen Deng +2 more

AUTOSurv: Interpretable Deep Learning Framework for Cancer Survival Analysis Incorporating Clinical and Multi-omics Data

Research Square(2023)10.21203/rs.3.rs-2486756/v1

N/A

0DataRank · unranked

4 citations

Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu‐Ping Wang +2 more

ImageNomer: developing an fMRI and omics visualization tool to detect racial bias in functional connectivity

(2023)10.36227/techrxiv.21992006

N/A

0DataRank · unranked

3 citations

Grant T. Daly, Yu‐Ping Wang, Anqi Liu, Hui Shen, Hong‐Wen Deng +2 more

Multi-View Variational Autoencoder for Missing Value Imputation in Untargeted Metabolomics

PubMed(2023)10.48550/arxiv.2310.07990

N/A

0DataRank · unranked

3 citations

Kuan‐Jui Su, Chong Wu, Xuewei Cao, Qiuying Sha, Li Wu +11 more

ImageNomer: description of a functional connectivity and omics analysis tool and case study identifying a race confound

arXiv (Cornell University)(2023)10.48550/arxiv.2302.00767

N/A

0DataRank · unranked

0 citations

Grant T. Daly, Zhou, Ziyu, Anqi Liu, Hui Shen, Hong‐Wen Deng +2 more

Identifiability in Functional Connectivity May Unintentionally Inflate Prediction Results

(2023)10.36227/techrxiv.23826441

Top 100%

0DataRank

Top 100%0 citations

Gang Qu, Kuan‐Jui Su, Anqi Liu, Hui Shen, Hong‐Wen Deng +2 more

Somatomotor-Visual Resting State Functional Connectivity Increases After Two Years in the UK Biobank Longitudinal Cohort

(2023)10.36227/techrxiv.23960856.v1

Top 100%

0DataRank

Top 100%0 citations

Kuan‐Jui Su, Qing Tian, Hui Shen, Hong‐Wen Deng, Yuping Wang +1 more

Somatomotor-Visual Resting State Functional Connectivity Increases After Two Years in the UK Biobank Longitudinal Cohort

(2023)10.36227/techrxiv.23960856

Top 100%

0DataRank

Top 100%0 citations

Kuan‐Jui Su, Qing Tian, Hui Shen, Hong‐Wen Deng, Yu‐Ping Wang +1 more

Somatomotor-Visual Resting State Functional Connectivity Increases After Two Years in the UK Biobank Longitudinal Cohort

medRxiv(2023)10.1101/2023.08.15.23294133

N/A

0DataRank · unranked

0 citations

Kuan‐Jui Su, Qing Tian, Hui Shen, Hong‐Wen Deng, Yu‐Ping Wang +1 more

Somatomotor-Visual Resting State Functional Connectivity Increases After Two Years in the UK Biobank Longitudinal Cohort

PubMed(2023)10.48550/arxiv.2308.07992

N/A

0DataRank · unranked

0 citations

Kuan‐Jui Su, Qing Tian, Hui Shen, Hong‐Wen Deng, Yu‐Ping Wang +1 more

Identifiability in Functional Connectivity May Unintentionally Inflate Prediction Results

arXiv (Cornell University)(2023)10.48550/arxiv.2308.01451

N/A

0DataRank · unranked

0 citations

Gang Qu, Kuan‐Jui Su, Anqi Liu, Hui Shen, Hong‐Wen Deng +2 more

omicsMIC: a Comprehensive Benchmarking Platform for Robust Comparison of Imputation Methods in Mass Spectrometry-based Omics Data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.12.557189

N/A

0DataRank · unranked

0 citations

Jiadong Ji, Kuan‐Jui Su, Chuan Qiu, Qing Tian, Lan‐Juan Zhao +5 more

Developing and comparing deep learning and machine learning algorithms for osteoporosis risk prediction

Frontiers in Artificial Intelligence(2024)10.3389/frai.2024.1355287

N/A

0DataRank · unranked

19 citations

Kuan‐Jui Su, Zhe Luo, Qing Tian, Lan‐Juan Zhao, Li Wu +3 more

Associations between genetically predicted plasma protein levels and Alzheimer’s disease risk: a study using genetic prediction models

Alzheimer s Research & Therapy(2024)10.1186/s13195-023-01378-4

N/A

0DataRank · unranked

16 citations

Shuai Liu, Keenan A. Walker, Hua Zhong, Dalia Ghoneim, Zichen Zhang +8 more

Beyond Amyloid: A Machine Learning-Driven Approach Reveals Properties of Potent GSK-3β Inhibitors Targeting Neurofibrillary Tangles

International Journal of Molecular Sciences(2024)10.3390/ijms25052646

N/A

0DataRank · unranked

8 citations

Ikenna Onwuekwe, Echezona E. Ezeanolue, Hong‐Wen Deng, Martin C. Nwadiugwu

Unveiling the link between physical activity levels and dementia risk: Insights from the UK Biobank study

Psychiatry Research(2024)10.1016/j.psychres.2024.115875

N/A

0DataRank · unranked

4 citations

Kai Zhang, Kuan‐Jui Su, Qin Tian, Hui Shen, Hong‐Wen Deng +1 more

A Staged Approach Using Machine Learning and Uncertainty Quantification to Predict the Risk of Hip Fracture

SSRN Electronic Journal(2024)10.2139/ssrn.4889454

N/A

0DataRank · unranked

3 citations

Kristoffer Larsen, Nancy E. Lane, Zhao Chen, Kuan‐Jui Su, Joyce H. Keyak +6 more

Sguq: Staged Graph Convolution Neural Network for Alzheimer's Disease Diagnosis Using Multi-Omics Data

SSRN Electronic Journal(2024)10.2139/ssrn.5007474

N/A

0DataRank · unranked

3 citations

Yixin Xie, Jeffrey D. Deng, Hui Shen, Hong‐Wen Deng, Weihua Zhou +2 more

A Demographic-Conditioned Variational Autoencoder for fMRI Distribution Sampling and Removal of Confounds

arXiv (Cornell University)(2024)10.48550/arxiv.2405.07977

N/A

0DataRank · unranked

0 citations

Gang Qu, Ziyu Zhou, Anqi Liu, Hong‐Wen Deng, Zhengming Ding +5 more

A Demographic-Conditioned Variational Autoencoder for Removal of Confounds from fMRI Data

(2024)10.36227/techrxiv.171591456.67476161/v1

N/A

0DataRank · unranked

0 citations

Gang Qu, Ziyu Zhou, Anqi Liu, Hong‐Wen Deng, Zhengming Ding +5 more

A Demographic-Conditioned Variational Autoencoder for fMRI Distribution Sampling and Removal of Confounds

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.16.594528

N/A

0DataRank · unranked

0 citations

Gang Qu, Ziyu Zhou, Anqi Liu, Hong‐Wen Deng, Zhengming Ding +5 more

An Attention‐Aware Multi‐Task Learning Framework Identifies Candidate Targets for Drug Repurposing in Sarcopenia

Journal of Cachexia Sarcopenia and Muscle(2025)10.1002/jcsm.13661

N/A

0DataRank · unranked

8 citations

Chuan Qiu, Lin Xu, Kuan‐Jui Su, Anqi Liu, Xiao Zhang +8 more

Integrative snRNA‐seq, molecular docking and dynamics simulations identifies Lasmiditan as drug candidate for Alzheimer's disease

Clinical and Translational Medicine(2025)10.1002/ctm2.70443

N/A

0DataRank · unranked

3 citations

Md. Selim Reza, Boluwatife Afolabi, Demetrius M. Maraganore, Hui Shen, Hong‐Wen Deng +1 more

Decoding Cellular Communication Networks and Signaling Pathways in Bone, Skeletal Muscle, and Bone-Muscle Crosstalk Through Spatial Transcriptomics

Research Square(2025)10.21203/rs.3.rs-6701121/v1

N/A

0DataRank · unranked

2 citations

Chuan Qiu, Yisu Li, Yun Gong, Weiqiang Lin, Boluwatife Afolabi +9 more

A Privacy-Preserving Domain Adversarial Federated learning for multi-site brain functional connectivity analysis

arXiv (Cornell University)(2025)10.48550/arxiv.2502.01885

N/A

0DataRank · unranked

0 citations

Likai Wang, Kuan‐Jui Su, Aiying Zhang, Zhu, Hao, Xiaowen Liu +5 more

Phenotypic and Genetic Associations Between Cardiovascular Disease Subtypes and Alzheimer’s Disease

medRxiv(2025)10.1101/2025.08.29.25334750

N/A

0DataRank · unranked

0 citations

Chen Zhao, R.K.L. Su, Hui Shen, Hong‐Wen Deng, Qing‐Hui Chen +3 more

Gene Expression and RNA Splicing Imputation Identifies Novel Candidate Genes Associated with Osteoporosis

The Journal of Clinical Endocrinology & Metabolism(2020)10.1210/clinem/dgaa572

N/A

0DataRank · unranked

22 citations

Hui Shen, Jonathan Greenbaum, Anqi Liu, Kuan‐Jui Su, Li-Shu Zhang +6 more

Mendelian Randomization Identifies CpG Methylation Sites With Mediation Effects for Genetic Influences on BMD in Peripheral Blood Monocytes

Frontiers in Genetics(2020)10.3389/fgene.2020.00060

N/A

0DataRank · unranked

16 citations

Chuan Qiu, Chao Xu, Qing Tian, Lan‐Juan Zhao, Li Wu +3 more

A Joint Analysis of Multi-Paradigm fMRI Data With Its Application to Cognitive Study

IEEE Transactions on Medical Imaging(2020)10.1109/tmi.2020.3042786

N/A

0DataRank · unranked

10 citations

Yun Gong, Jianchao Bai, Jingyu Liu, Hong‐Wen Deng, Vince D. Calhoun +2 more

A novel computational strategy for DNA methylation imputation using mixture regression model (MRM)

BMC Bioinformatics(2020)10.1186/s12859-020-03865-z

N/A

0DataRank · unranked

20 citations

Chao Xu, Hong‐Wen Deng, Hui Shen, Fangtang Yu

Combining artificial intelligence: deep learning with Hi-C data to predict the functional effects of non-coding variants

Bioinformatics(2020)10.1093/bioinformatics/btaa970

N/A

0DataRank · unranked

15 citations

Hong‐Mei Xiao, Hong‐Wen Deng, Xiang‐He Meng

Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis

Osteoporosis International(2020)10.1007/s00198-020-05389-x

N/A

0DataRank · unranked

14 citations

Liwang Liu, Jing‐Jing Ni, Xin‐Tong Wei, Guoliang Feng, Xiaolin Yang +9 more

Network-based Transcriptome-wide Expression Study for Postmenopausal Osteoporosis

The Journal of Clinical Endocrinology & Metabolism(2020)10.1210/clinem/dgaa319

N/A

0DataRank · unranked

13 citations

Tianliu Peng, Le Wang, Xiang‐He Meng, Wei Zhu, Yong Zeng +5 more

Identification of 67 Pleiotropic Genes Associated With Seven Autoimmune/Autoinflammatory Diseases Using Multivariate Statistical Analysis

Frontiers in Immunology(2020)10.3389/fimmu.2020.00030

N/A

0DataRank · unranked

11 citations

Nian Shi, Yu Feng, Yifan Li, Jiebing Tan, Fei Xu +6 more

Mutation of rat Zp2 causes ROS-mediated oocyte apoptosis

Reproduction(2020)10.1530/rep-20-0037

N/A

0DataRank · unranked

9 citations

Hualin Huang, Ming‐Hua Zeng, Ruping Quan, Junting Yang, Dan Guo +4 more

Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis

European Journal of Human Genetics(2020)10.1038/s41431-020-00727-3

N/A

0DataRank · unranked

8 citations

Guijuan Feng, Hong Zhang, Qian Xu, Jing‐Jing Ni, Min Zhao +8 more

Sarcopenia-related traits and coronary artery disease: a bi-directional Mendelian randomization study

Aging(2020)10.18632/aging.102815

N/A

0DataRank · unranked

29 citations

Qıang Zhang, Wen‐Di Shen, Boyang Li, Wan‐Qiang Lv, Hong‐Mei Xiao +2 more

Medium-coverage DNA sequencing in the design of the genetic association study

European Journal of Human Genetics(2020)10.1038/s41431-020-0656-2

N/A

0DataRank · unranked

5 citations

Ruiyuan Zhang, Hui Shen, Hong‐Wen Deng, Chao Xu

Identification of pleiotropic loci underlying hip bone mineral density and trunk lean mass

Journal of Human Genetics(2020)10.1038/s10038-020-00835-4

N/A

0DataRank · unranked

4 citations

Xin‐Tong Wei, Hong Zhang, Xiaolin Yang, Hui Shen, Qing Tian +4 more

Identification of pleiotropic genes between risk factors of stroke by multivariate metaCCA analysis

Molecular Genetics and Genomics(2020)10.1007/s00438-020-01692-8

N/A

0DataRank · unranked

7 citations

Jonathan Greenbaum, Chuan Qiu, Kelvin Li, Qian Wang, Siyuan Tang +2 more

Four pleiotropic loci associated with fat mass and lean mass

International Journal of Obesity(2020)10.1038/s41366-020-0645-0

N/A

0DataRank · unranked

1 citations

Shu Ran, Yong Lin, Yuxue Zhang, Xiaolin Yang, Xin‐Tong Wei +10 more

Accurate Diagnosis of Colorectal Cancer Based on Histopathology Images Using Artificial Intelligence

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.15.992917

N/A

0DataRank · unranked

12 citations

Gang Yu, Chao Xu, Xiang‐He Meng, Jianhua Zhou, Changli Zheng +48 more

Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.13.201582

N/A

0DataRank · unranked

11 citations

Ting Xie, Chao Xu, Xinghua Shi, Chong Wu, Kai Sun +6 more

Single-cell RNA sequencing deconvolutes the in vivo heterogeneity of human bone marrow-derived mesenchymal stem cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.06.027904

N/A

0DataRank · unranked

10 citations

Xiaohua Li, Junxiao Yang, Yun Gong, Huixi Zhang, Xiang Qiu +16 more

Semantic Segmentation to Extract Coronary Arteries in Invasive Coronary Angiograms

medRxiv(2020)10.1101/2020.05.26.20103440

N/A

0DataRank · unranked

9 citations

Robert Bober, Haipeng Tang, Jinshan Tang, Minghao Dong, Chaoyang Zhang +7 more

Prioritization of osteoporosis-associated GWAS SNPs using epigenomics and transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.18.160309

N/A

0DataRank · unranked

0 citations

Hong‐Wen Deng, Hui Shen, Melanie Ehrlich, Xiao Zhang

A gene-level methylome-wide association analysis identifies novel Alzheimer’s disease genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.13.201376

N/A

0DataRank · unranked

0 citations

Jonathan R. Bradley, Yanming Li, Lang Wu, Hong‐Wen Deng, Chong Wu

Causal Analysis of Health Interventions and Environments for Influencing the Spread of COVID-19 in the United States of America

medRxiv(2020)10.1101/2020.09.29.20203505

N/A

0DataRank · unranked

0 citations

Tao Xu, Kai Zhang, Hong‐Wen Deng, Eric Boerwinkle, Momiao Xiong +1 more

Single-cell RNA sequencing deconvolutes the in vivo heterogeneity of human bone marrow-derived mesenchymal stem cells

International Journal of Biological Sciences(2021)10.7150/ijbs.61950

N/A

0DataRank · unranked

115 citations

Xiaohua Li, Junxiao Yang, Yun Gong, Huixi Zhang, Xiang Qiu +17 more

A systematic dissection of human primary osteoblasts in vivo at single-cell resolution

Aging(2021)10.18632/aging.203452

N/A

0DataRank · unranked

40 citations

Junxiao Yang, Xiao‐Hua Li, Cui Zhou, Yu Chen, Zun Wang +17 more

Cell‐specific network analysis of human folliculogenesis reveals network rewiring in antral stage oocytes

Journal of Cellular and Molecular Medicine(2021)10.1111/jcmm.16315

N/A

0DataRank · unranked

21 citations

Yun Gong, Zun Wang, Jonathan Greenbaum, Hong‐Mei Xiao, Hong‐Wen Deng +1 more

Identification and Functional Characterization of Metabolites for Bone Mass in Peri- and Postmenopausal Chinese Women

The Journal of Clinical Endocrinology & Metabolism(2021)10.1210/clinem/dgab146

N/A

0DataRank · unranked

21 citations

Hong‐Mei Xiao, Yinhua Zhang, Qi Zhao, Kuan‐Jui Su, Lin Xu +25 more

Effective Cancer Subtype and Stage Prediction via Dropfeature-DNNs

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2021)10.1109/tcbb.2021.3058941

N/A

0DataRank · unranked

8 citations

Wensheng Zhang, Hong‐Wen Deng, Kun Zhang, Zhong Chen

Epigenetics of Mitochondria-Associated Genes in Striated Muscle

Epigenomes(2021)10.3390/epigenomes6010001

N/A

0DataRank · unranked

5 citations

Hong‐Wen Deng, Melanie Ehrlich, Kenneth C. Ehrlich

Epigenomic and transcriptomic prioritization of candidate obesity-risk regulatory GWAS SNPs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.29.466522

N/A

0DataRank · unranked

1 citations

Tianying Li, Hong‐Mei Xiao, Kenneth C. Ehrlich, Hui Shen, Hong‐Wen Deng +2 more

Identification of Potential Novel Pleiotropic Susceptibility Variants Common To Lumbar Spine Bone Mineral Density And Birth Weight

Research Square(2021)10.21203/rs.3.rs-633182/v1

N/A

0DataRank · unranked

0 citations

Shidi Hu, Lin Xu, Xiang‐He Meng, Xiao Wang, Yinhua Zhang +11 more

Multi-omics research in sarcopenia: Current progress and future prospects

Ageing Research Reviews(2022)10.1016/j.arr.2022.101576

N/A

0DataRank · unranked

79 citations

Shan‐Shan Dong, Hui Shen, Dan-Yue Yang, Binbin Chen, Xueying Ma +4 more

Integration of the Human Gut Microbiome and Serum Metabolome Reveals Novel Biological Factors Involved in the Regulation of Bone Mineral Density

Frontiers in Cellular and Infection Microbiology(2022)10.3389/fcimb.2022.853499

N/A

0DataRank · unranked

34 citations

Lin Xu, Kuan‐Jui Su, Rui Gong, Hui Shen, Jie Shen +3 more

DeepDNAbP: A deep learning-based hybrid approach to improve the identification of deoxyribonucleic acid-binding proteins

Computers in Biology and Medicine(2022)10.1016/j.compbiomed.2022.105433

N/A

0DataRank · unranked

14 citations

Saifuddin Mahmud, Kawsar Ahmed, Wenyu Chen, Mohammad Ali Moni, Hong‐Wen Deng +3 more

Development of an approach to extracting coronary arteries and detecting stenosis in invasive coronary angiograms

Journal of Medical Imaging(2022)10.1117/1.jmi.9.4.044002

N/A

0DataRank · unranked

9 citations

Haipeng Tang, Daniel McGonigle, Zhuo He, Chaoyang Zhang, Yu‐Ping Wang +4 more

Epigenomic and Transcriptomic Prioritization of Candidate Obesity-Risk Regulatory GWAS SNPs

International Journal of Molecular Sciences(2022)10.3390/ijms23031271

N/A

0DataRank · unranked

8 citations

Tianying Li, Hong‐Mei Xiao, Kenneth C. Ehrlich, Hui Shen, Hong‐Wen Deng +2 more

Identification and Functional Characterization of Metabolites for Skeletal Muscle Mass in Early Postmenopausal Chinese Women

The Journals of Gerontology Series A(2022)10.1093/gerona/glac075

N/A

0DataRank · unranked

7 citations

Lin Xu, Rui Gong, Hui Shen, Zhihao Qu, Qi Zhao +4 more

Dissection of cellular communication between human primary osteoblasts and bone marrow mesenchymal stem cells in vivo at single-cell resolution

Research Square(2022)10.21203/rs.3.rs-1209239/v1

N/A

0DataRank · unranked

0 citations

Yan Chen, Xiao‐Hua Li, Tianpeng Li, Chong Cao, Hui-Xi Zhang +13 more

Gut microbiota impacts bone via Bacteroides vulgatus-valeric acid-related pathways

Nature Communications(2023)10.1038/s41467-023-42005-y

N/A

0DataRank · unranked

84 citations

Hong‐Mei Xiao, Hui Li, Wan‐Qiang Lv, Jonathan Greenbaum, Rui Gong +27 more

Deep Learning Methods for Omics Data Imputation

Biology(2023)10.3390/biology12101313

N/A

0DataRank · unranked

46 citations

Meng Song, Hui Shen, Huixiao Hong, Ping Gong, Hong‐Wen Deng +2 more

Enteric nervous system damage caused by abnormal intestinal butyrate metabolism may lead to functional constipation

Frontiers in Microbiology(2023)10.3389/fmicb.2023.1117905

N/A

0DataRank · unranked

19 citations

Wan‐Qiang Lv, Junting Yang, Lin Xu, Hui Li, Hang-Jing Tan +7 more

Dissection of Cellular Communication between Human Primary Osteoblasts and Bone Marrow Mesenchymal Stem Cells in Osteoarthritis at Single-Cell Resolution

International Journal of Stem Cells(2023)10.15283/ijsc22101

N/A

0DataRank · unranked

18 citations

Yan Chen, Xiao‐Hua Li, Chong Cao, Hui-Xi Zhang, Cui Zhou +10 more

Atp6i deficient mouse model uncovers transforming growth factor-β1 /Smad2/3 as a key signaling pathway regulating odontoblast differentiation and tooth root formation

International Journal of Oral Science(2023)10.1038/s41368-023-00235-2

N/A

0DataRank · unranked

8 citations

Abigail McVicar, Yilin Chen, Hong‐Wen Deng, Zhihe Zhao, Wei Chen +2 more

Repurposing Approved Drugs for Sarcopenia Based on Transcriptomics Data in Humans

Pharmaceuticals(2023)10.3390/ph16040607

N/A

0DataRank · unranked

9 citations

Danyang Liu, Zhengwu Xiao, Jonathan Greenbaum, Hui Shen, Hong‐Mei Xiao +2 more

Potential Molecular Mechanisms of Alzheimer’s Disease from Genetic Studies

Biology(2023)10.3390/biology12040602

N/A

0DataRank · unranked

7 citations

Hui Shen, Hong‐Wen Deng, Martin C. Nwadiugwu

Multi-view information fusion using multi-view variational autoencoder to predict proximal femoral fracture load

Frontiers in Endocrinology(2023)10.3389/fendo.2023.1261088

N/A

0DataRank · unranked

7 citations

Joyce H. Keyak, Xuewei Cao, Qiuying Sha, Li Wu, Zhe Luo +9 more

Metabolomic profiles associated with physical activity in White and African American adult men

PLoS ONE(2023)10.1371/journal.pone.0289077

N/A

0DataRank · unranked

5 citations

Yuanyuan Li, Byeong Yeob Choi, Roman Fernadez, Kuan‐Jui Su, Kumar Sharma +11 more

Most synonymous allelic variants in HIV tat are not silent

Genomics(2023)10.1016/j.ygeno.2023.110603

N/A

0DataRank · unranked

2 citations

Ronald Benjamin, Hong‐Wen Deng, Jerome I. Rotter, Martin R. Schiller, Christopher J. Giacoletto

MIMOSA: A resource consisting of improved methylome imputation models increases power to identify DNA methylation-phenotype associations

medRxiv(2023)10.1101/2023.03.20.23287418

N/A

0DataRank · unranked

1 citations

Zichen Zhang, Hong‐Wen Deng, Chong Wu, Hunter J. Melton

Hong‐Wen Deng

Indexed papers

Top data-sharing exemplar

Papers