🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jun S. Song

University of Illinois Urbana-Champaign

ORCID: 0000-0002-0422-2175
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile
0.356Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants

Frontiers in Genetics(2020)10.3389/fgene.2020.00730
Top 50%
0.356DataRank
Top 50%6 citations

Yi Zhang, Shilu Zhang, Sushmita Roy, Pablo Pérez‐Piñera, Jun S. Song +1 more

Papers

Driven by 24 papers — median percentile 50. Top paper: “Novel SOX10 indel mutations drive schwannomas through impaired transactivation of myelination gene programs”.

Novel SOX10 indel mutations drive schwannomas through impaired transactivation of myelination gene programs

Neuro-Oncology(2023)10.1093/neuonc/noad121
N/A
1.0DataRank · unranked
31 citations

Ajay Ravindranathan, Rohit Gupta, Nicholas Stevers, Abigail K. Suwala, Chibo Hong +36 more

Categorical spectral analysis of periodicity in nucleosomal DNA

Nucleic Acids Research(2016)10.1093/nar/gkw101
N/A
0.983DataRank · unranked
32 citations

H. Tomas Rube, Jun S. Song, Hu Jin

Measuring DNA mechanics on the genome scale

Nature(2020)10.1038/s41586-020-03052-3
N/A
0.745DataRank · unranked
143 citations

Dmitriy G. Bobrovnikov, Zan Qureshi, Tunc Kayikcioglu, Thuy T. M. Ngo, Anand Ranjan +10 more

ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants

Frontiers in Genetics(2020)10.3389/fgene.2020.00730
Top 50%
0.356DataRank
Top 50%6 citations

Yi Zhang, Shilu Zhang, Sushmita Roy, Pablo Pérez‐Piñera, Jun S. Song +1 more

Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011286
N/A
0.253DataRank · unranked
4 citations

Junha Shin, Jacob Matthew Schreiber, Shilu Zhang, Yi Zhang, Mohith Manjunath +4 more

Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.29.458098
N/A
0.234DataRank · unranked
3 citations

Jacob Matthew Schreiber, Junha Shin, Shilu Zhang, Yi Zhang, Mohith Manjunath +4 more

Riemannian geometry and statistical modeling correct for batch effects and control false discoveries in single-cell surface protein count data

Physical review. E(2020)10.1103/physreve.102.012409
N/A
0DataRank · unranked
1 citations

Jacob R. Leistico, Christopher Cook, Yale Liu, Raymond J. Cho, Jeffrey B. Cheng +2 more

Measuring DNA mechanics on the genome scale

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.255042
N/A
0DataRank · unranked
12 citations

Dmitriy G. Bobrovnikov, Zan Qureshi, Tunc Kayikcioglu, Thuy T. M. Ngo, Anand Ranjan +10 more

Epigenetic engineering of yeast reveals dynamic molecular adaptation to methylation stress and genetic modulators of specific DNMT3 family members

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.26.919936
N/A
0DataRank · unranked
0 citations

Somang Kim, Hu Jin, Michael Gapinske, Wendy S. Woods, Pablo Pérez‐Piñera +2 more

Riemannian geometry and statistical modeling correct for batch effects and control false discoveries in single-cell surface protein count data from CITE-seq

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.28.067306
N/A
0DataRank · unranked
0 citations

Jacob R. Leistico, Christopher Cook, Yale Liu, Raymond J. Cho, Jeffrey B. Cheng +2 more

Predicting TCR-Epitope Binding Specificity Using Deep Metric Learning and Multimodal Learning

Genes(2021)10.3390/genes12040572
N/A
0DataRank · unranked
41 citations

Jacob R. Leistico, Timothy J. Miller, Somang Kim, Jun S. Song, Alan Luu

Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells

Nature Communications(2021)10.1038/s41467-021-25088-3
N/A
0DataRank · unranked
25 citations

Hu Jin, Yun‐Kyo Kim, Brandon Cho, Marcela Guzman-Ayala, Andrew J.K. Williamson +6 more

Epigenomic tensor predicts disease subtypes and reveals constrained tumor evolution

Cell Reports(2021)10.1016/j.celrep.2021.108927
N/A
0DataRank · unranked
24 citations

Priyanka Saini, Christopher R. Futtner, Miroslav Hejna, Yasuhiro Omura, Pritin N. Soni +9 more

Predicting TCR-epitope Binding Specificity Using Deep Metric Learning and Multimodal Learning

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.19.436191
N/A
0DataRank · unranked
1 citations

Jacob R. Leistico, Timothy J. Miller, Somang Kim, Jun S. Song, Alan Luu

Spectral clustering of single-cell multi-omics data on multilayer graphs

Bioinformatics(2022)10.1093/bioinformatics/btac378
N/A
0DataRank · unranked
13 citations

Jacob R. Leistico, Raymond J. Cho, Jeffrey B. Cheng, Jun S. Song, Shuyi Zhang

Spectral clustering of single-cell multi-omics data on multilayer graphs

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.24.477443
N/A
0DataRank · unranked
0 citations

Jacob R. Leistico, Raymond J. Cho, Jeffrey B. Cheng, Jun S. Song, Shuyi Zhang

Chromatin structure and context-dependent sequence features control prime editing efficiency

Frontiers in Genetics(2023)10.3389/fgene.2023.1222112
N/A
0DataRank · unranked
10 citations

Jimmy B. Yuan, Wendy S. Woods, Destry A. Newton, Pablo Pérez‐Piñera, Jun S. Song +1 more

Chromatin structure and context-dependent sequence features control prime editing efficiency

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.15.536944
N/A
0DataRank · unranked
4 citations

Jimmy B. Yuan, Wendy S. Woods, Destry A. Newton, Pablo Pérez‐Piñera, Jun S. Song +1 more

A unified and self-reinforcing mechanism of tumor cell immortality

Research Square(2023)10.21203/rs.3.rs-2849176/v1
N/A
0DataRank · unranked
0 citations

Carter J. Barger, Jimmy Yuan, Somang Kim, Chibo Hong, Olivia Lenzo +11 more

Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation

iScience(2020)10.1016/j.isci.2020.101582
N/A
0DataRank · unranked
67 citations

Christopher Cook, Andrew J. Sedgewick, Shuyi Zhang, Marlys S. Fassett, Roberto R. Ricardo-Gonzalez +20 more

Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform

PLoS Biology(2020)10.1371/journal.pbio.3000583
N/A
0DataRank · unranked
51 citations

Amin Emad, Matthew J. Berry, Lisa Gatzke, Milt Epstein, Daniel Lanier +23 more

Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors

Neuro-Oncology(2020)10.1093/neuonc/noaa248
N/A
0DataRank · unranked
16 citations

Jialu Yan, Yeoan Youn, Kristen Drucker, Thomas M. Kollmeyer, Andrew McKinney +8 more

Adult diffuse glioma GWAS by molecular subtype identifies variants inD2HGDHandFAM20C

Neuro-Oncology(2020)10.1093/neuonc/noaa117
N/A
0DataRank · unranked
37 citations

Kristen Drucker, Thomas M. Kollmeyer, Matt Kosel, Paul A. Decker, Annette M. Molinaro +20 more

Epigenetic engineering of yeast reveals dynamic molecular adaptation to methylation stress and genetic modulators of specific DNMT3 family members

Nucleic Acids Research(2020)10.1093/nar/gkaa161
N/A
0DataRank · unranked
23 citations

Somang Kim, Hu Jin, Michael Gapinske, Wendy S. Woods, Pablo Pérez‐Piñera +2 more