Julia Waldman

Also affiliated with Klarman Cell Observatory

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.1Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Papers

Driven by 40 papers — median percentile 85. Top paper: “A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors”.

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Joint single-cell measurements of nuclear proteins and RNA in vivo

Nature Methods(2021)10.1038/s41592-021-01278-1

N/A

4.1DataRank · unranked

137 citations

Christopher N. Parkhurst, Emma M. Magee, Devan R. Phillips, Ehsan Habibi, Fei Chen +5 more

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/761429

N/A

2.5DataRank · unranked

68 citations

Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro, Indresh Singh +44 more

Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.25.267336

N/A

1.6DataRank · unranked

35 citations

Karthik A. Jagadeesh, Jimmy A. Guo, Hannah I. Hoffman, Payman Yadollahpour, Rahul Mohan +46 more

A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2024)10.1038/s41591-024-03215-z

Top 15%

1.3DataRank

Top 15%91 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

SnFFPE-Seq: towards scalable single nucleus RNA-Seq of formalin-fixed paraffin-embedded (FFPE) tissue

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.25.505257

N/A

1.3DataRank · unranked

28 citations

Alexandre Melnikov, Cristin McCabe, Eugene Drokhlyansky, Nicholas Van Wittenberghe, Emma M. Magee +7 more

Single-nucleus cross-tissue molecular reference maps to decipher disease gene function

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.19.452954

Top 16%

1.3DataRank

Top 16%27 citations

Eugene Drokhlyansky, Shankara Anand, Ayshwarya Subramanian, Evgenij Fiskin, Michal Slyper +19 more

Protective role for kidney TREM2 macrophages in obesity- and diabetes-induced kidney injury

Cell Reports(2024)10.1016/j.celrep.2024.114253

N/A

1.2DataRank · unranked

45 citations

Katherine A. Vernon, Yiming Zhou, Jamie L. Marshall, Maria Alimova, Carlos Arevalo +35 more

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/455451

N/A

1.1DataRank · unranked

19 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +24 more

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

Cell(2019)10.1016/j.cell.2019.06.029

N/A

1.1DataRank · unranked

1412 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +28 more

Spatially organized multicellular immune hubs in human colorectal cancer

Cell(2021)10.1016/j.cell.2021.08.003

N/A

1.0DataRank · unranked

787 citations

Matan Hofree, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji, Alborz Bejnood +73 more

Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus

Science(2022)10.1126/science.abf1970

N/A

0.939DataRank · unranked

522 citations

M. Grace Gordon, Meena Subramaniam, Min Cheol Kim, George C. Hartoularos, Sasha Targ +25 more

A single-cell landscape of high-grade serous ovarian cancer

Nature Medicine(2020)10.1038/s41591-020-0926-0

N/A

0.938DataRank · unranked

518 citations

Itay Tirosh, Elizabeth H. Stover, Isaac Wakiro, Michael S. Cuoco, Idan Alter +30 more

Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems

Science(2021)10.1126/science.aax2656

N/A

0.902DataRank · unranked

408 citations

Daniel R. Goodwin, Anubhav Sinha, Asmamaw T. Wassie, Fei Chen, Evan R. Daugharthy +164 more

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.07.574538

Top 22%

0.898DataRank

Top 22%34 citations

Orr Ashenberg, Natalie B. Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper +53 more

Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation

Nature Communications(2019)10.1038/s41467-019-13382-0

N/A

0.808DataRank · unranked

218 citations

Eriene-Heidi Sidhom, Maheswarareddy Emani, Nareh Sahakian, Yiming Zhou, Maria Kost-Alimova +12 more

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

Nature Communications(2019)10.1038/s41467-019-10756-2

N/A

0.803DataRank · unranked

211 citations

Bo Li, Cristin McCabe, Abigail Knecht, Yiming Yang, Eugene Drokhlyansky +11 more

Obesity-instructed TREM2 high macrophages identified by comparative analysis of diabetic mouse and human kidney at single cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.30.446342

N/A

0.768DataRank · unranked

14 citations

Yiming Zhou, Jamie L. Marshall, Maria Alimova, Fan Zhang, Michal Slyper +23 more

Multi-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.563503

N/A

0.564DataRank · unranked

11 citations

Gökçen Eraslan, Maria Beatrice Alora, Juan Manuel Leyva-Castillo, Sean Kim, Heather Choe +24 more

A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.28.569028

N/A

0.484DataRank · unranked

11 citations

Isha Monga, Brian Lin, Viral S. Shah, Michal Slyper, Bruno Giotti +18 more

Simultaneous single cell measurements of intranuclear proteins and gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.18.427139

N/A

0.483DataRank · unranked

24 citations

Christopher N. Parkhurst, Emma M. Magee, Devan R. Phillips, Ehsan Habibi, Fei Chen +5 more

RAAS blockade, kidney disease, and expression of ACE2 , the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.23.167098

N/A

0.312DataRank · unranked

7 citations

Katherine A. Vernon, Michal Slyper, Julia Waldman, Malte D. Luecken, Kirk Gosik +13 more

Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.30.426796

N/A

0.297DataRank · unranked

4 citations

Matan Hofree, Jonathan Chen, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji +71 more

HTAPP_TST- Nuclei isolation from frozen tissue v2

(2020)10.17504/protocols.io.bhbcj2iw

N/A

0.219DataRank · unranked

1 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Prisca Liberali, Åsa Segerstolpe +2 more

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/476036

N/A

0.208DataRank · unranked

3 citations

Bo Li, Cristin McCabe, Abigail Knecht, Eugene Drokhlyansky, Nicholas Van Wittenberghe +10 more

SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

Genome Biology(2025)10.1186/s13059-025-03573-y

N/A

0.107DataRank · unranked

1 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Robert Strasser +16 more

Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2025)10.1038/s41591-025-03665-z

N/A

0.104DataRank · unranked

1 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

Author Correction: Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

Nature Communications(2020)10.1038/s41467-020-19357-w

N/A

0DataRank · unranked

0 citations

Bo Li, Cristin McCabe, Abigail Knecht, Yiming Yang, Eugene Drokhlyansky +11 more

HTAPP_CST- Nuclei isolation from frozen tissue v2

(2020)10.17504/protocols.io.bhbej2je

N/A

0DataRank · unranked

0 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Orit Rozenblatt–Rosen, Prisca Liberali +3 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v2

(2021)10.17504/protocols.io.busfnwbn

N/A

0DataRank · unranked

0 citations

Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

SlideCNA: Spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.25.517982

N/A

0DataRank · unranked

0 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Ofir Cohen +13 more

Inference of single cell profiles from histology stains with the Single Cell omics from Histology Analysis Framework (SCHAF)

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.21.533680

N/A

0DataRank · unranked

36 citations

Xingjian Chen, Eeshit Dhaval Vaishnav, Koseki J. Kobayashi-Kirschvink, Metamia Ciampricotti, Ke Zhang +30 more

HTAPP_Dissociation of human primary lung cancer resection to a single-cell suspension for single-cell RNA-seq v1

(2019)10.17504/protocols.io.4j8gurw

N/A

0DataRank · unranked

0 citations

Avinash Waghray, Julia Waldman, Isaac Wakiro, Mei-Ju Su, Sébastien Vigneau +6 more

HTAPP_CST- Nuclei isolation from frozen tissue v1

(2019)10.17504/protocols.io.4pegvje

N/A

0DataRank · unranked

0 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Orit Rozenblatt–Rosen, Prisca Liberali +2 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v1

(2019)10.17504/protocols.io.batcieiw

N/A

0DataRank · unranked

0 citations

Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

HTAPP_Dissociation of human primary lung cancer resection to a single-cell suspension for single-cell RNA-seq v2

(2020)10.17504/protocols.io.bhbgj2jw

N/A

0DataRank · unranked

0 citations

Avinash Waghray, Julia Waldman, Isaac Wakiro, Mei-Ju Su, Sébastien Vigneau +6 more

HTAPP_Dissociation of human metastatic breast cancer core needle biopsy to a single-cell suspension for single-cell RNA-seq v1

(2019)10.17504/protocols.io.4j7gurn

N/A

0DataRank · unranked

0 citations

Julia Waldman, Jingyi Wu, Abhay Kanodia, Sébastien Vigneau, Asaf Rotem +5 more

HTAPP_TST- Nuclei isolation from frozen tissue v1

(2019)10.17504/protocols.io.4pggvjw

N/A

0DataRank · unranked

0 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Orit Rozenblatt–Rosen, Prisca Liberali +2 more

HTAPP_Dissociation of human metastatic breast cancer core needle biopsy to a single-cell suspension for single-cell RNA-seq v2

(2020)10.17504/protocols.io.bhbjj2kn

N/A

0DataRank · unranked

0 citations

Julia Waldman, Jingyi Wu, Abhay Kanodia, Sébastien Vigneau, Asaf Rotem +4 more

HTAPP_NST- Nuclei isolation from frozen tissue v1

(2019)10.17504/protocols.io.4pfgvjn

N/A

0DataRank · unranked

0 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Orit Rozenblatt–Rosen, Prisca Liberali +2 more

Julia Waldman

Indexed papers

Top data-sharing exemplar

Papers