Jesse Gillis

Also affiliated with Occupational Cancer Research Centre, Cellular Research (United States)

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

10.2Author DataRank

Indexed papers

13in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 13 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cellular anatomy of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03970-w

Top 6%

3.6DataRank

Top 6%288 citations

Brian Zingg, Katherine S. Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N. Foster +78 more

Papers

Driven by 57 papers — median percentile 60. Top paper: “Is it time to change the reference genome?”.

Is it time to change the reference genome?

Genome Biology(2019)10.1186/s13059-019-1774-4

N/A

6.4DataRank · unranked

231 citations

Alexander Dobin, Jesse Gillis, Sara Ballouz

Cellular anatomy of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03970-w

Top 6%

3.6DataRank

Top 6%288 citations

Brian Zingg, Katherine S. Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N. Foster +78 more

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Cell(2023)10.1016/j.cell.2023.02.018

Top 15%

1.4DataRank

Top 15%82 citations

Jiahao Gao, Beatrice Borsari, Yucheng T. Yang, Timur R. Galeev, Gamze Gürsoy +95 more

A limited set of transcriptional programs define major cell types

Genome Research(2020)10.1101/gr.263186.120

Top 17%

1.2DataRank

Top 17%38 citations

Manuel Muñoz-Aguirre, Valentin Wucher, Carrie Davis, Diego Garrido-Martín, Sarah Djebali +13 more

Cellular Anatomy of the Mouse Primary Motor Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.02.323154

Top 18%

1.2DataRank

Top 18%45 citations

Brian Zingg, Katherine S. Matho, Quanxin Wang, Xiaoyin Chen, Nicholas N. Foster +77 more

Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events

Cardiovascular Research(2020)10.1093/cvr/cvaa280

N/A

1.1DataRank · unranked

38 citations

Melissa Mangala, Matthew Perry, Stewart Heitmann, Jesse Gillis, Adam P. Hill +2 more

Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato

Cell(2020)10.1016/j.cell.2020.05.021

N/A

1.0DataRank · unranked

858 citations

Xingang Wang, Matthias Benoit, Sebastian Soyk, Lara Pereira, Lei Zhang +30 more

A guide to the BRAIN Initiative Cell Census Network data ecosystem

PLoS Biology(2023)10.1371/journal.pbio.3002133

Top 24%

0.845DataRank

Top 24%56 citations

Maryann E. Martone, Giorgio A. Ascoli, Jan G. Bjaalie, Hong‐Wei Dong, Satrajit S. Ghosh +95 more

Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

Genome Research(2022)10.1101/gr.275613.121

Top 28%

0.709DataRank

Top 28%21 citations

Sara Ballouz, Jesse Gillis, Alexander Dobin, Benjamin Kaminow

Comparative transcriptomics reveals human-specific cortical features

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.19.508480

N/A

0.613DataRank · unranked

24 citations

Janet Song, David Exposito-Alonso, Hamsini Suresh, Nathan J. Castro, Fenna M. Krienen +38 more

CoCoCoNet: conserved and comparative co-expression across a diverse set of species

Nucleic Acids Research(2020)10.1093/nar/gkaa348

N/A

0.590DataRank · unranked

50 citations

Manthan Shah, Sara Ballouz, Megan Crow, Jesse Gillis, John Lee

Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex

Cell Genomics(2025)10.1016/j.xgen.2025.100879

N/A

0.425DataRank · unranked

16 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

Cross-species consensus atlas of the primate basal ganglia

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.15.694496

Top 52%

0.330DataRank

Top 52%8 citations

Yuanyuan Fu, Matthew T. Schmitz, Alma Dubuc, Niklas Kempynck, Morgan Wirthlin +95 more

Learning single-cell chromatin accessibility profiles using meta-analytic marker genes

Briefings in Bioinformatics(2022)10.1093/bib/bbac541

Top 54%

0.315DataRank

Top 54%4 citations

Ziqi Tang, Stephan Fischer, Chandana Rajesh, Rohit Tripathy, Peter K. Koo +2 more

The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.26.513573

Top 54%

0.312DataRank

Top 54%7 citations

Maryann E. Martone, Patrick R. Hof, Ed S. Lein, Aviv Regev, Giorgio A. Ascoli +94 more

A Curated Compendium of Transcriptomic Data for the Exploration of Neocortical Development

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.26.581612

Top 58%

0.269DataRank

Top 58%5 citations

Ricky S. Adkins, Joshua Orvis, Guangyan Li, Xoel Mato-Blanco, Alex M. Casella +15 more

Conserved coexpression at single cell resolution across primate brains

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.20.508736

N/A

0.241DataRank · unranked

4 citations

Megan Crow, Nikolas L. Jorstad, Rebecca D. Hodge, Ed S. Lein, Alexander Dobin +3 more

Learning single-cell chromatin accessibility profiles using meta-analytic marker genes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.01.438068

Top 71%

0.132DataRank

Top 71%1 citations

Ziqi Tang, Stephan Fischer, Chandana Rajesh, Rohit Tripathy, Peter K. Koo +2 more

Multiscale Co-Expression in the Brain

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.018630

N/A

0.104DataRank · unranked

1 citations

Megan Crow, Stephan Fischer, Jesse Gillis, Benjamin Harris

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.03.974220

N/A

0.104DataRank · unranked

1 citations

Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca K. Chance, Davide Risso +5 more

Cross-tissue analysis of allelic X-chromosome inactivation ratios resolves features of human development

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.13.460075

N/A

0DataRank · unranked

0 citations

Sara Ballouz, John Hover, Jesse Gillis, Jonathan M. Werner

Faculty Opinions recommendation of Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature(2021)10.3410/f.739238352.793582700

N/A

0DataRank · unranked

0 citations

Stephan Fischer, Jesse Gillis

Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms

Nucleic Acids Research(2022)10.1093/nar/gkac276

N/A

0DataRank · unranked

46 citations

Hamsini Suresh, John Lee, Jesse Gillis, Megan Crow

Variability of cross-tissue X-chromosome inactivation characterizes timing of human embryonic lineage specification events

Developmental Cell(2022)10.1016/j.devcel.2022.07.007

N/A

0DataRank · unranked

37 citations

Sara Ballouz, John Hover, Jesse Gillis, Jonathan M. Werner

A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships

Genome biology(2022)10.1186/s13059-022-02790-z

N/A

0DataRank · unranked

15 citations

Nathan A. Fox, Jesse Gillis, Ruchi Lohia

Defining the extent of gene function using ROC curvature

Bioinformatics(2022)10.1093/bioinformatics/btac692

N/A

0DataRank · unranked

5 citations

Jesse Gillis, Stephan Fischer

Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain

PLoS Biology(2021)10.1371/journal.pbio.3001341

N/A

0DataRank · unranked

8 citations

Cantin Ortiz, Daniel Fürth, Stephan Fischer, Konstantinos Meletis, Anthony M. Zador +2 more

How many markers are needed to robustly determine a cell's type?

iScience(2021)10.1016/j.isci.2021.103292

N/A

0DataRank · unranked

37 citations

Jesse Gillis, Stephan Fischer

Single-cell co-expression analysis reveals that transcriptional modules are shared across cell types in the brain

Cell Systems(2021)10.1016/j.cels.2021.04.010

N/A

0DataRank · unranked

39 citations

Megan Crow, Stephan Fischer, Jesse Gillis, Benjamin Harris

Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections

Nature Neuroscience(2021)10.1038/s41593-021-00842-4

N/A

0DataRank · unranked

131 citations

Xiaoyin Chen, Stephan Fischer, Shaina Lu, Huiqing Zhan, Jesse Gillis +2 more

Gene duplication and cellular divergence in crops

Research Square(2022)10.21203/rs.3.rs-1739501/v1

N/A

0DataRank · unranked

1 citations

Bruno Guillotin, Ramin Rahni, Michael J. Passalacqua, Mohammed Mohammed, Xiaosa Xu +4 more

Comparative transcriptomics reveals human-specific cortical features

Science(2023)10.1126/science.ade9516

N/A

0DataRank · unranked

205 citations

Janet Song, David Exposito-Alonso, Hamsini Suresh, Nathan Castro-Pacheco, Fenna M. Krienen +39 more

A pan-grass transcriptome reveals patterns of cellular divergence in crops

Nature(2023)10.1038/s41586-023-06053-0

N/A

0DataRank · unranked

162 citations

Ramin Rahni, Michael J. Passalacqua, Mohammed Ateequr Mohammed, Xiaosa Xu, Sunil Kenchanmane Raju +6 more

Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery

Developmental Cell(2021)10.1016/j.devcel.2020.12.015

N/A

0DataRank · unranked

274 citations

Megan Crow, Brian R. Rice, Forrest Li, Benjamin Harris, Lei Liu +17 more

Replicability of spatial gene expression atlas data from the adult mouse brain

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.16.343210

Top 100%

0DataRank

Top 100%0 citations

Cantin Ortiz, Daniel Fürth, Stephan Fischer, Konstantinos Meletis, Anthony M. Zador +2 more

Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution

Nature Ecology & Evolution(2023)10.1038/s41559-023-02186-7

N/A

0DataRank · unranked

53 citations

Megan Crow, Nikolas L. Jorstad, Rebecca D. Hodge, Ed S. Lein, Alexander Dobin +3 more

The transcriptional legacy of developmental stochasticity

Nature Communications(2023)10.1038/s41467-023-43024-5

N/A

0DataRank · unranked

17 citations

Risa Karakida Kawaguchi, Maria T. Peña, Stephan Fischer, Megan Crow, Leon French +4 more

Preservation of co-expression defines the primary tissue fidelity of human neural organoids

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.31.535112

N/A

0DataRank · unranked

7 citations

Jesse Gillis, Jonathan M. Werner

Coexpression enhances cross-species integration of scRNA-seq across diverse plant species

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.28.569145

N/A

0DataRank · unranked

2 citations

Jesse Gillis, Michael J. Passalacqua

Population variability in X-chromosome inactivation across 9 mammalian species

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.17.562732

N/A

0DataRank · unranked

0 citations

John Hover, Jesse Gillis, Jonathan M. Werner

Convergent evolution of plant prickles by repeated gene co-option over deep time

Science(2024)10.1126/science.ado1663

N/A

0DataRank · unranked

69 citations

David Alonso, Pietro Gramazio, Katharine M. Jenike, Jia He, Andrea Arrones +34 more

Whole-cortex in situ sequencing reveals input-dependent area identity

Nature(2024)10.1038/s41586-024-07221-6

N/A

0DataRank · unranked

54 citations

Stephan Fischer, M. Rué, Aixin Zhang, Didhiti Mukherjee, Patrick O. Kanold +3 more

Meta-analysis of single-cell RNA sequencing co-expression in human neural organoids reveals their high variability in recapitulating primary tissue

PLoS Biology(2024)10.1371/journal.pbio.3002912

N/A

0DataRank · unranked

16 citations

Jesse Gillis, Jonathan M. Werner

Coexpression enhances cross-species integration of single-cell RNA sequencing across diverse plant species

Nature Plants(2024)10.1038/s41477-024-01738-4

N/A

0DataRank · unranked

15 citations

Jesse Gillis, Michael J. Passalacqua

Population variability in X-chromosome inactivation across 10 mammalian species

Nature Communications(2024)10.1038/s41467-024-53449-1

N/A

0DataRank · unranked

9 citations

John Hover, Jesse Gillis, Jonathan M. Werner

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

BMC Bioinformatics(2024)10.1186/s12859-024-05814-6

N/A

0DataRank · unranked

1 citations

Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca K. Chance, Davide Risso +5 more

Convergent evolution of plant prickles is driven by repeated gene co-option over deep time

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.21.581474

N/A

0DataRank · unranked

5 citations

David Alonso, Pietro Gramazio, Katharine M. Jenike, Jia He, Andrea Arrones +33 more

Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.21.609075

N/A

0DataRank · unranked

4 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

Cross-expression meta-analysis of 695 brain samples reveals coordinated gene expression across spatially adjacent cells

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.17.613579

N/A

0DataRank · unranked

0 citations

Mara C.P. Rue, Leon French, J. Helen Cross, Sarah Choi, Xiaoyin Chen +2 more

Cross-expression meta-analysis of mouse brain slices reveals coordinated gene expression across spatially adjacent cells

Genome biology(2025)10.1186/s13059-025-03747-8

N/A

0DataRank · unranked

1 citations

Mara C.P. Rue, Leon French, J. Helen Cross, Sarah Choi, Xiaoyin Chen +2 more

Coexpression reveals conserved mechanisms of transcriptional cell identity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.10.375758

N/A

0DataRank · unranked

2 citations

Hamsini Suresh, John Lee, Jesse Gillis, Megan Crow

The misplaced mouse Pax6 interneuron subclass: A cross-species transcriptomic reassignment

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.23.666342

N/A

0DataRank · unranked

0 citations

Hamsini Suresh, Jesse Gillis, Jonathan M. Werner

How many markers are needed to robustly determine a cell’s type?

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.16.439807

N/A

0DataRank · unranked

6 citations

Jesse Gillis, Stephan Fischer

Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes

Cancer Discovery(2020)10.1158/2159-8290.cd-20-0133

N/A

0DataRank · unranked

130 citations

Lindsey A. Baker, Astrid Deschênes, Benno Traub, Giuseppina Caligiuri, Dennis Plenker +22 more

A Meta-Analytic Single-Cell Atlas of Mouse Bone Marrow Hematopoietic Development

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.12.456098

N/A

0DataRank · unranked

5 citations

John Lee, Jesse Gillis, Benjamin Harris

Prevalent and Dynamic Binding of the Cell Cycle Checkpoint Kinase Rad53 to Gene Promoters

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.23.445333

N/A

0DataRank · unranked

3 citations

Risa Karakida Kawaguchi, Jesse Gillis, Bruce Stillman, Yi-Jun Sheu

Defining the extent of gene function using ROC curvature

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.03.458825

N/A

0DataRank · unranked

1 citations

Jesse Gillis, Stephan Fischer

Jesse Gillis

Indexed papers

Top data-sharing exemplar

Papers