Ömer Yılmaz

Also affiliated with Ondokuz Mayıs University, The Scarborough Hospital, Marmara University

EngineeringMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 36 papers. Top paper: “Combined PD-1, BRAF and MEK inhibition in BRAFV600E colorectal cancer: a phase 2 trial”.

Combined PD-1, BRAF and MEK inhibition in BRAFV600E colorectal cancer: a phase 2 trial

Nature Medicine(2023)10.1038/s41591-022-02181-8

N/A

4.9DataRank · unranked

192 citations

Jonathan Chen, Sherry Chao, Karin Pelka, Marios Giannakis, Julian M. Hess +40 more

Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis

Cell Stem Cell(2021)10.1016/j.stem.2021.08.007

N/A

4.3DataRank · unranked

142 citations

Charlie Chung, Haiwei Mou, Khristian E. Bauer-Rowe, Michael E. Xifaras, Ilgin Ergin +33 more

A single-cell survey of the small intestinal epithelium

Nature(2017)10.1038/nature24489

N/A

1.1DataRank · unranked

1850 citations

Moshe Biton, Noga Rogel, Rebecca H. Herbst, Karthik Shekhar, Indresh Singh +18 more

Single-cell profiling of environmental enteropathy reveals signatures of epithelial remodeling and immune activation

Science Translational Medicine(2022)10.1126/scitranslmed.abi8633

N/A

0.969DataRank · unranked

32 citations

Simutanyi Mwakamui, Travis K. Hughes, Nolawit Mulugeta, Victor Mudenda, Ellen Besa +21 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.508492

N/A

0.946DataRank · unranked

16 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Ketone Body Signaling Mediates Intestinal Stem Cell Homeostasis and Adaptation to Diet

Cell(2019)10.1016/j.cell.2019.07.048

N/A

0.888DataRank · unranked

372 citations

Moshe Biton, Adam L. Haber, Nuray Gunduz, George Eng, Liam T. Gaynor +33 more

The CD155/TIGIT axis promotes and maintains immune evasion in neoantigen-expressing pancreatic cancer

Cancer Cell(2021)10.1016/j.ccell.2021.07.007

N/A

0.834DataRank · unranked

259 citations

Laurens J. Lambert, Zackery A. Ely, Nimisha B. Pattada, Arjun J. Bhutkar, George Eng +21 more

Gut-Liver Physiomimetics Reveal Paradoxical Modulation of IBD-Related Inflammation by Short-Chain Fatty Acids

Cell Systems(2020)10.1016/j.cels.2020.02.008

N/A

0.812DataRank · unranked

223 citations

Catherine Communal, Jason Velazquez, Christian Maaß, Yu-Ja Huang, Kirsten Schneider +7 more

Regenerative Reprogramming of the Intestinal Stem Cell State via Hippo Signaling Suppresses Metastatic Colorectal Cancer

Cell stem cell(2020)10.1016/j.stem.2020.07.003

N/A

0.789DataRank · unranked

191 citations

Jordi Xiol, Michael T. Dill, Wei-Chien Yuan, Riccardo Panero, Jatin Roper +9 more

Aneuploidy increases resistance to chemotherapeutics by antagonizing cell division

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2009506117

N/A

0.718DataRank · unranked

119 citations

Wen Zhou, Adrianna E. Amaro, James M. McFarland, Mariana Villalobos-Ortiz, Jeremy Ryan +7 more

Stiffness Restricts the Stemness of the Intestinal Stem Cells and Skews Their Differentiation Toward Goblet Cells

Gastroenterology(2023)10.1053/j.gastro.2023.02.030

N/A

0.652DataRank · unranked

76 citations

Peng Lei, Wenying Kang, Priscilla Cheung, Tao Xu, Miyeko Mana +20 more

Fecal Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-Cov-2) RNA Is Associated With Decreased Coronavirus Disease 2019 (COVID-19) Survival

Clinical Infectious Diseases(2021)10.1093/cid/ciab623

N/A

0.457DataRank · unranked

20 citations

George Eng, M Fărcăşanu, Laura E. Avena, Manish C. Choudhary, Virginia A. Triant +19 more

Dickkopf-2 regulates the stem cell marker LGR5 in colorectal cancer via HNF4α1

iScience(2021)10.1016/j.isci.2021.102411

N/A

0.457DataRank · unranked

20 citations

Jaekwang Jeong, Jungmin Choi, Jaechul Lim, Ravi K. Dinesh, Jonathan Braverman +14 more

T helper cells modulate intestinal stem cell renewal and differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/217133

N/A

0.368DataRank · unranked

5 citations

Adam L. Haber, Semir Beyaz, Noga Rogel, Indresh Singh, Karthik Shekhar +26 more

Randomised, placebo-controlled, phase 3 trial of the effect of the omega-3 polyunsaturated fatty acid eicosapentaenoic acid (EPA) on colorectal cancer recurrence and survival after surgery for resectable liver metastases: EPA for Metastasis Trial 2 (EMT2) study protocol

BMJ Open(2023)10.1136/bmjopen-2023-077427

N/A

0.368DataRank · unranked

7 citations

Pei Loo Ow, Sharon Ruddock, Tim Brend, Alexandra F Smith, Helen Marshall +14 more

Chronic metabolic stress drives developmental programs and loss of tissue functions in non-transformed liver that mirror tumor states and stratify survival

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.569407

N/A

0.330DataRank · unranked

8 citations

Marc S. Sherman, Jessica E.S. Shay, Adam J. Rubin, Benjamin E. Mead, Tyler T. Dao +24 more

High-fat diet-activated fatty acid oxidation mediates intestinal stemness and tumorigenicity

Cell Reports(2021)10.1016/j.celrep.2021.109212

N/A

0DataRank · unranked

203 citations

Amanda M. Hussey, Constantine N. Tzouanas, Shinya Imada, Yesenia Barrera Millan, Dorukhan Bahceci +8 more

Programmable conjugative CRISPR interference targeting genotoxin in the gut

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.682122

N/A

0DataRank · unranked

0 citations

Hania Timek, Chengyuan Fang, Zongqi Wang, Amber E. Haley, Maria Jennings +9 more

Region-Specific Proteome Changes of the Intestinal Epithelium during Aging and Dietary Restriction

Cell Reports(2020)10.1016/j.celrep.2020.107565

N/A

0DataRank · unranked

92 citations

Chia‐Wei Cheng, Joanna Kirkpatrick, Domenico Di Fraia, Jina Yun, Patrick Schädel +8 more

High-fat diet activates a PPAR-δ program to enhance intestinal stem cell function

Cell stem cell(2021)10.1016/j.stem.2021.03.001

N/A

0DataRank · unranked

15 citations

Miyeko Mana, Ömer Yılmaz, Semir Beyaz

100 Years of Exploiting Diet and Nutrition for Tissue Regeneration

Cell stem cell(2021)10.1016/j.stem.2021.02.014

N/A

0DataRank · unranked

13 citations

Ömer Yılmaz, Chia‐Wei Cheng

Stiffness Regulates Intestinal Stem Cell Fate

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435410

N/A

0DataRank · unranked

5 citations

Peng Lei, Wenying Kang, Priscilla Cheung, Tao Xu, Miyeko Mana +22 more

Stiffness Regulates Intestinal Stem Cell Fate

Research Square(2021)10.21203/rs.3.rs-362156/v1

N/A

0DataRank · unranked

1 citations

Peng Lei, Wenying Kang, Priscilla Cheung, Tao Xu, Miyeko Mana +22 more

Primary Human Colonic Mucosal Barrier Crosstalk with Super Oxygen-Sensitive Faecalibacterium prausnitzii in Continuous Culture

Med(2020)10.1016/j.medj.2020.07.001

N/A

0DataRank · unranked

129 citations

Yu-Ja Huang, Jun Young Yoon, John Kemmitt, Charles Wright, Kirsten Schneider +17 more

Author response: Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

(2025)10.7554/elife.104815.3.sa2

N/A

0DataRank · unranked

0 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +26 more

Dietary suppression of MHC-II expression in intestinal stem cells enhances intestinal tumorigenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.05.284174

N/A

0DataRank · unranked

0 citations

Jatin Roper, Khristian E. Bauer-Rowe, Michael E. Xifaras, Ilgin Ergin, Lenka Dohnalova +29 more

Dietary fat and lipid metabolism in the tumor microenvironment

Biochimica et Biophysica Acta (BBA) - Reviews on Cancer(2023)10.1016/j.bbcan.2023.188984

N/A

0DataRank · unranked

28 citations

Qiming Zhang, Cigdem Elif Celik, Ethan M. Reich, Ömer Yılmaz, Swagata Goswami

Alcohol Drinking Without Meals Is Associated With Risk of Gastrointestinal Cancers, Including Early-Onset Cases

Gastroenterology(2023)10.1053/j.gastro.2023.11.012

N/A

0DataRank · unranked

9 citations

Nadia J. Ahmedin, Xiaoyu Zong, Ömer Yılmaz, Faraz Bishehsari, Yin Cao +1 more

Faecalibacterium prausnitzii A2-165 metabolizes host- and media-derived chemicals and induces transcriptional changes in colonic epithelium in GuMI human gut microphysiological system

Microbiome Research Reports(2024)10.20517/mrr.2024.14

N/A

0DataRank · unranked

5 citations

Caroline A. Lewis, Charles Wright, Kirsten Schneider, John Kemmitt, David L. Trumper +5 more

Duodenal quantitative mucosal morphometry in children with environmental enteric dysfunction: a cross-sectional multicountry analysis

American Journal of Clinical Nutrition(2024)10.1016/j.ajcnut.2024.04.027

N/A

0DataRank · unranked

4 citations

David Coomes, Paul Kelly, Adam R Greene, Asad Ali, Chola Mulenga +37 more

Immunometabolic defects of CD8+ T cells disrupt gut barrier integrity in people with HIV

Cell(2025)10.1016/j.cell.2025.08.024

N/A

0DataRank · unranked

12 citations

Leah Froehle, Alexandra N Pipkin, Heeva Baharlou, Alice H. Linder, Palak Shah +24 more

Droplet vs Picowell: Considerations for Single-cell Transcriptomic Profiling of Human Colon Biopsies

Cellular and Molecular Gastroenterology and Hepatology(2025)10.1016/j.jcmgh.2025.101503

N/A

0DataRank · unranked

1 citations

Ryan J. Musich, Connor M. Geraghty, Alexander Caraballo, Shijie He, Saleh Khawaled +7 more

Nutritional Control of Intestinal Stem Cells in Homeostasis and Tumorigenesis

Trends in Endocrinology and Metabolism(2020)10.1016/j.tem.2020.11.003

N/A

0DataRank · unranked

44 citations

Omid Mashinchian, Yasemin Başbınar, Ender Ellidokuz, Chia‐Wei Cheng, Ömer Yılmaz +1 more

Dissecting cell-type-specific metabolism in pancreatic ductal adenocarcinoma

eLife(2020)10.7554/elife.56782

N/A

0DataRank · unranked

84 citations

Zhaoqi Li, Laura V. Danai, Anna M. Westermark, Alicia M. Darnell, Raphaël Ferreira +14 more

Dissecting cell type-specific metabolism in pancreatic ductal adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.09.984237

N/A

0DataRank · unranked

2 citations

Zhaoqi Li, Laura V. Danai, Anna M. Westermark, Alicia M. Darnell, Raphaël Ferreira +14 more

Primary human colonic mucosal barrier crosstalk with super oxygen-sensitive Faecalibacterium prausnitzii in continuous culture

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.02.185082

N/A

0DataRank · unranked

0 citations

Yu-Ja Huang, Jun–Young Yoon, John Kemmitt, Charles Wright, Kirsten Schneider +17 more