Xiaoyun Xing

Biochemistry, Genetics and Molecular BiologyPharmacology, Toxicology and Pharmaceutics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 31 papers. Top paper: “Derivation of trophoblast stem cells from naïve human pluripotent stem cells”.

Derivation of trophoblast stem cells from naïve human pluripotent stem cells

eLife(2020)10.7554/elife.52504

N/A

4.9DataRank · unranked

317 citations

Mariana Beltcheva, Paul Gontarz, Bo Zhang, Pooja Popli, Laura A. Fischer +9 more

Epigenetic therapy potentiates transposable element transcription to create tumor-enriched antigens in glioblastoma cells

Nature Genetics(2024)10.1038/s41588-024-01880-x

N/A

0.553DataRank · unranked

39 citations

Nakul M. Shah, Ju Heon Maeng, Yonghao Liang, Noah L. Basri, Jiaxin Ge +14 more

Charting the regulatory landscape of TP53 on transposable elements in cancer

Genome Research(2025)10.1101/gr.279398.124

N/A

0.362DataRank · unranked

9 citations

Yonghao Liang, Colin McCornack, Xiaoyun Xing, Heather K. Schmidt, Chad Tomlinson +5 more

Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution

Genome Research(2025)10.1101/gr.279372.124

N/A

0.309DataRank · unranked

6 citations

Yiran Hou, Qinglin Zeng, Irène Wang, Meiru Shang, Kwangdeok Shin +6 more

Distinct contributions of Etv2+ and Flk1+ progenitors to endothelial, hematopoietic, and cardiac lineages

Cell Reports(2025)10.1016/j.celrep.2025.116733

N/A

0.104DataRank · unranked

1 citations

Minseo Kim, Jun Wu, Yoojung Kwon, Ye-Ram Kim, Ashraf Ul Kabir +10 more

Epigenetic Therapies in Ovarian Cancer Alter Repetitive Element Expression in a TP53 -Dependent Manner

Cancer Research(2021)10.1158/0008-5472.can-20-4243

N/A

0DataRank · unranked

29 citations

Noor Diab, Elisa Arthofer, Melissa Hadley, Tomas Kanholm, Uzma Rentia +12 more

Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish

Genome biology(2021)10.1186/s13059-021-02493-x

N/A

0DataRank · unranked

26 citations

Yujie Chen, Jiaxin Ge, Alicia N. Wilkening, Yiran Hou, Hyung Joo Lee +8 more

Common DNA methylation dynamics in endometriod adenocarcinoma and glioblastoma suggest universal epigenomic alterations in tumorigenesis

Communications Biology(2021)10.1038/s42003-021-02094-1

N/A

0DataRank · unranked

21 citations

Benpeng Miao, Xiaoyun Xing, Ting Wang, Bo Zhang, Jennifer A. Karlow

A genome-wide CRISPR-Cas9 knockout screen identifies essential and growth-restricting genes in human trophoblast stem cells

Nature Communications(2022)10.1038/s41467-022-30207-9

N/A

0DataRank · unranked

60 citations

Shuhua Fu, Rowan M. Karvas, Brian Chew, Laura A. Fischer, Xiaoyun Xing +7 more

Developmental Pathways Are Epigenetically Reprogrammed during Lung Cancer Brain Metastasis

Cancer Research(2022)10.1158/0008-5472.can-21-4160

N/A

0DataRank · unranked

21 citations

Siddhartha Devarakonda, Xiaoyun Xing, H. Josh Jang, Ramaswamy Govindan, Mark A. Watson +2 more

Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes and gene regulation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.01.475239

N/A

0DataRank · unranked

6 citations

Kara Quaid, Xiaoyun Xing, Heather K. Schmidt, Ting Wang, Mayank Choudhary

Methamphetamine induced regional-specific transcriptomic and epigenetic changes in the rat brain

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.13.496004

N/A

0DataRank · unranked

0 citations

Xiaoyun Xing, Viktoriia Bazylianska, Pamela Madden, Anna Moszczyńska, Bo Zhang +1 more

Embryonic Vitamin D Deficiency Programs Hematopoietic Stem Cells to Induce Type 2 Diabetes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.08.507174

N/A

0DataRank · unranked

0 citations

Amy E. Riek, Kevin T. Bauerle, Adriana Dusso, Kyle P. McNerney, Ruteja A. Barve +14 more

Genome-Wide Epigenomic Profiling of Primary Non-Small Cell Lung Cancer Reveals Specific and Recurrent DNA Methylation Alterations in Smoker Versus Never-Smoker Patients

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.06.511208

N/A

0DataRank · unranked

0 citations

Erica C. Pehrsson, Xiaoyun Xing, Mark A. Watson, Siddhartha Devarakonda, Ramaswamy Govindan +2 more

Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes

Nature Communications(2023)10.1038/s41467-023-36364-9

N/A

0DataRank · unranked

90 citations

Kara Quaid, Xiaoyun Xing, Heather K. Schmidt, Ting Wang, Mayank Choudhary

Uropathogenic Escherichia coli infection-induced epithelial trained immunity impacts urinary tract disease outcome

Nature Microbiology(2023)10.1038/s41564-023-01346-6

N/A

0DataRank · unranked

64 citations

Jessica K. Harrison, Benjamin Olson, Hyung Joo Lee, Valerie P. O’Brien, Xiaoyun Xing +14 more

Embryonic vitamin D deficiency programs hematopoietic stem cells to induce type 2 diabetes

Nature Communications(2023)10.1038/s41467-023-38849-z

N/A

0DataRank · unranked

21 citations

Amy E. Riek, Kevin T. Bauerle, Adriana Dusso, Kyle P. McNerney, Ruteja A. Barve +17 more

Non-Small Cell Lung Cancer Epigenomes Exhibit Altered DNA Methylation in Smokers and Never-Smokers

Genomics Proteomics & Bioinformatics(2023)10.1016/j.gpb.2023.03.006

N/A

0DataRank · unranked

17 citations

Erica C. Pehrsson, Xiaoyun Xing, Mark A. Watson, Siddhartha Devarakonda, Ramaswamy Govindan +2 more

Methamphetamine-induced region-specific transcriptomic and epigenetic changes in the brain of male rats

Communications Biology(2023)10.1038/s42003-023-05355-3

N/A

0DataRank · unranked

13 citations

Xiaoyun Xing, Viktoriia Bazylianska, Pamela Madden, Anna Moszczyńska, Bo Zhang +1 more

Data from Developmental Pathways Are Epigenetically Reprogrammed during Lung Cancer Brain Metastasis

(2023)10.1158/0008-5472.c.6514001.v1

N/A

0DataRank · unranked

0 citations

Siddhartha Devarakonda, Xiaoyun Xing, H. Josh Jang, Ramaswamy Govindan, Mark A. Watson +2 more

Data from Developmental Pathways Are Epigenetically Reprogrammed during Lung Cancer Brain Metastasis

(2023)10.1158/0008-5472.c.6514001

N/A

0DataRank · unranked

0 citations

Siddhartha Devarakonda, Xiaoyun Xing, H. Josh Jang, Ramaswamy Govindan, Mark A. Watson +2 more

Supplementary Table from Developmental Pathways Are Epigenetically Reprogrammed during Lung Cancer Brain Metastasis

Figshare(2023)10.1158/0008-5472.22431827.v1

N/A

0DataRank · unranked

0 citations

Siddhartha Devarakonda, Xiaoyun Xing, H. Josh Jang, Ramaswamy Govindan, Mark A. Watson +2 more

Baf155 controls hematopoietic differentiation and regeneration through chromatin priming

Cell Reports(2024)10.1016/j.celrep.2024.114558

N/A

0DataRank · unranked

8 citations

Changxu Fan, Ashraf Ul Kabir, Karen Krchma, Minseo Kim, Yoojung Kwon +4 more

Cis-regulatory evolution of the recently expanded Ly49 gene family

Nature Communications(2024)10.1038/s41467-024-48990-y

N/A

0DataRank · unranked

2 citations

Xiaoyun Xing, Samuel J. H. Murphy, Jennifer Poursine‐Laurent, Heather K. Schmidt, Bijal A. Parikh +7 more

NFIA regulates articular chondrocyte fatty acid metabolism and joint homeostasis

Science Translational Medicine(2025)10.1126/scitranslmed.adm9488

N/A

0DataRank · unranked

9 citations

Liang Fang, Meng Shi, Xiangfeng Niu, Tiandao Li, Xiaofei Li +15 more

Cross-tissue molecular responses in the liver and blood after toxicant exposures

Research Square(2025)10.21203/rs.3.rs-7610132/v1

N/A

0DataRank · unranked

1 citations

Benpeng Miao, Shuhua Fu, Wanqing Shao, Cristian Coarfa, Ravindra Kumar1 +26 more

Toxicogenomic Insights into Environmental Toxicant Exposures: The TaRGET II Resource

Research Square(2025)10.21203/rs.3.rs-7285514/v1

N/A

0DataRank · unranked

0 citations

Benpeng Miao, Shuhua Fu, Cristian Coarfa, Ravindra Kumar1, Prashant Kumar Kuntala +26 more

Comparison of differential accessibility analysis strategies for ATAC-seq data

Scientific Reports(2020)10.1038/s41598-020-66998-4

N/A

0DataRank · unranked

83 citations

Shuhua Fu, Xiaoyun Xing, Shaopeng Liu, Benpeng Miao, Viktoriia Bazylianska +8 more

Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors

Cell Reports(2020)10.1016/j.celrep.2020.108395

N/A

0DataRank · unranked

17 citations

Karen Krchma, Hyung Joo Lee, Sairam Prabhakar, Xiaoli Wang, Haiyong Zhao +7 more

DeepH&M: Estimating single-CpG hydroxymethylation and methylation levels from enrichment and restriction enzyme sequencing methods

Science Advances(2020)10.1126/sciadv.aba0521

N/A

0DataRank · unranked

9 citations

H. Josh Jang, Xiaoyun Xing, Daofeng Li, Michael J. Vasek, Joseph D. Dougherty +2 more

OCT4 cooperates with distinct ATP-dependent chromatin remodelers in naïve and primed pluripotent states in human

Nature Communications(2021)10.1038/s41467-021-25107-3

N/A

0DataRank · unranked

38 citations

Kyoung‐mi Park, Paul Gontarz, Bo Zhang, Joshua Pan, Zachary M. McKenzie +19 more