Curtis Huttenhower

Also affiliated with Harvard University Press, Cancer Research And Biostatistics

Biochemistry, Genetics and Molecular BiologyMedicineEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

25.2Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Papers

Driven by 88 papers — median percentile 84. Top paper: “A framework for human microbiome research”.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Accessible, curated metagenomic data through ExperimentHub

Nature Methods(2017)10.1038/nmeth.4468

Top 2%

7.1DataRank

Top 2%570 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Indice penale(2023)10.1038/s41587-023-01688-w

Top 4%

5.0DataRank

Top 4%1390 citations

Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo +21 more

Western-Style Diet, pks Island-Carrying Escherichia coli, and Colorectal Cancer: Analyses From Two Large Prospective Cohort Studies

Gastroenterology(2022)10.1053/j.gastro.2022.06.054

N/A

2.5DataRank · unranked

109 citations

Rong Zhong, Tomotaka Ugai, Melissa Zhao, Koichiro Haruki, Naohiko Akimoto +27 more

Accessible, curated metagenomic data through ExperimentHub

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/103085

Top 10%

2.0DataRank

Top 10%65 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes

Nature Medicine(2024)10.1038/s41591-024-03067-7

N/A

1.9DataRank · unranked

108 citations

Fenglei Wang, Amrisha Bhosle, Danyue Dong, Raaj S. Mehta, Andrew R. Ghazi +18 more

Metagenomic biomarker discovery and explanation

Genome Biology(2011)10.1186/gb-2011-12-6-r60

N/A

1.5DataRank · unranked

16383 citations

Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S. Garrett +2 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234

N/A

1.4DataRank · unranked

10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Nature Biotechnology(2013)10.1038/nbt.2676

N/A

1.4DataRank · unranked

9259 citations

Jesse Zaneveld, J. Gregory Caporaso, Daniel McDonald, Dan Knights, Joshua A Reyes +8 more

Multivariable association discovery in population-scale meta-omics studies

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009442

N/A

1.2DataRank · unranked

2502 citations

Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen +15 more

Delivery mode impacts newborn gut colonization efficiency

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.29.919993

N/A

1.2DataRank · unranked

18 citations

Larson Hogstrom, Allison Bryant, Agnès Bergerat, Avital Cher, Shawna Pochan +9 more

Temporal development of the gut microbiome in early childhood from the TEDDY study

Nature(2018)10.1038/s41586-018-0617-x

N/A

1.1DataRank · unranked

2041 citations

Nadim J. Ajami, Jacqueline L. O’Brien, Diane S. Hutchinson, Daniel P. Smith, Matthew C. Wong +28 more

Metagenomic microbial community profiling using unique clade-specific marker genes

Nature Methods(2012)10.1038/nmeth.2066

N/A

1.1DataRank · unranked

1891 citations

Levi Waldron, Annalisa Ballarini, Vagheesh Narasimhan, Olivier Jousson, Curtis Huttenhower +2 more

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Nature Communications(2020)10.1038/s41467-020-16366-7

N/A

1.0DataRank · unranked

855 citations

Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi +13 more

Global chemical effects of the microbiome include new bile-acid conjugations

Nature(2020)10.1038/s41586-020-2047-9

N/A

0.959DataRank · unranked

595 citations

Alexey V. Melnik, Alison Vrbanac, Ting Fu, Kathryn A. Patras, Mitchell P. Christy +53 more

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures

Nature Biotechnology(2023)10.1038/s41587-023-01872-y

Top 22%

0.934DataRank

Top 22%19 citations

Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, C. M. Grieve +16 more

Multivariable Association Discovery in Population-scale Meta-omics Studies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.20.427420

N/A

0.923DataRank · unranked

469 citations

Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen +15 more

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x

N/A

0.918DataRank · unranked

454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

Nature(2023)10.1038/s41586-022-05546-8

N/A

0.885DataRank · unranked

364 citations

Marcus C. de Goffau, María Elisa Pérez-Muñoz, Marie‐Claire Arrieta, Fredrik Bäckhed, Peer Bork +41 more

The gut microbiome modifies the associations of short- and long-term physical activity with body weight changes

Microbiome(2023)10.1186/s40168-023-01542-w

Top 23%

0.859DataRank

Top 23%30 citations

Raaj S. Mehta, Wenjie Ma, Long H. Nguyen, Dong D. Wang, Andrew R. Ghazi +15 more

Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men

Genome Medicine(2021)10.1186/s13073-021-00921-y

N/A

0.774DataRank · unranked

173 citations

Long H. Nguyen, Mingyang Song, Dong D. Wang, Eric A. Franzosa, Yin Cao +12 more

Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin

Genome biology(2022)10.1186/s13059-022-02753-4

N/A

0.765DataRank · unranked

163 citations

Dmitry Shungin, Himel Mallick, Melanie Schirmer, Long H. Nguyen, Raivo Kolde +5 more

Metagenomic assessment of gut microbial communities and risk of severe COVID-19

Genome Medicine(2023)10.1186/s13073-023-01202-6

N/A

0.524DataRank · unranked

32 citations

Daniel Okin, David A. Drew, Vincent M. Battista, Sirus Jesudasen, Thomas Kuntz +20 more

Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease

Nature Communications(2025)10.1038/s41467-025-66888-1

Top 41%

0.461DataRank

Top 41%17 citations

Giacomo Antonello, Lucas Schiffer, Davide Golzato, Andres Wokaty, Francesco Beghini +32 more

Metagenomic assessment of gut microbial communities and risk of severe COVID-19

Research Square(2022)10.21203/rs.3.rs-1717624/v1

N/A

0.421DataRank · unranked

8 citations

Long H. Nguyen, Daniel Okin, David A. Drew, Vincent Battista, Sirus Jesudasen +20 more

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures

medRxiv(2022)10.1101/2022.10.24.22281483

Top 55%

0.301DataRank

Top 55%3 citations

Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, Claire Grieve +16 more

The 15th Genomic Standards Consortium meeting

Standards in Genomic Sciences(2013)10.4056/sigs.3457

N/A

0.226DataRank · unranked

1 citations

Ilene Karsch-Mizrachi, Peter Sterk, Dawn Field, Lynette Hirschman, Tatiana Tatusova +54 more

Mucosal metabolites fuel the growth and virulence of E. coli linked to Crohn’s disease

JCI Insight(2022)10.1172/jci.insight.157013

N/A

0DataRank · unranked

33 citations

Xochitl C. Morgan, Belgin Dogan, François‐Pierre Martin, Suzy Strickler, Akihiko Oka +14 more

Association of midlife antibiotic use with subsequent cognitive function in women

PLoS ONE(2022)10.1371/journal.pone.0264649

N/A

0DataRank · unranked

25 citations

Paul Lochhead, Yiqing Wang, Wenjie Ma, Long H. Nguyen, Bharati Kochar +4 more

Relationship between pet ownership and risk of high depressive symptoms in adolescence and young adulthood

Journal of Affective Disorders(2022)10.1016/j.jad.2022.11.070

N/A

0DataRank · unranked

10 citations

Susanne Strohmaier, Carri Westgarth, Curtis Huttenhower, Astrid C. Erber, Shahab Haghayegh +10 more

Human threat learning is associated with gut microbiota composition

PNAS Nexus(2022)10.1093/pnasnexus/pgac271

N/A

0DataRank · unranked

6 citations

Thomas Kuntz, Yoann Stussi, Olivia T. Karaman, Sophia Vranos, Bridget Callaghan +4 more

Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease

Nature Medicine(2023)10.1038/s41591-023-02217-7

N/A

0DataRank · unranked

156 citations

Jared R. Mayers, Yancong Zhang, Amrisha Bhosle, Nathaniel R. Glasser, Long H. Nguyen +15 more

Challenges and opportunities in sharing microbiome data and analyses

Nature Microbiology(2023)10.1038/s41564-023-01484-x

N/A

0DataRank · unranked

63 citations

ROBERT FINN, Alice C. McHardy, Curtis Huttenhower

Metagenomics of the Gut Microbiome in Parkinson's Disease: Prodromal Changes

Annals of Neurology(2023)10.1002/ana.26719

N/A

0DataRank · unranked

55 citations

Jeremy E. Wilkinson, Kjetil Bjørnevik, Michael A. Schwarzschild, Lauren J. McIver, Alberto Ascherio +2 more

Interplay between diet, circulating indolepropionate concentrations and cardiometabolic health in US populations

Gut(2023)10.1136/gutjnl-2023-330410

N/A

0DataRank · unranked

35 citations

Jun Li, Biqi Wang, Lu Zhu, Yanping Li, Kerry L. Ivey +9 more

Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children

Science Advances(2023)10.1126/sciadv.adi0497

N/A

0DataRank · unranked

30 citations

Guilherme Fahur Bottino, Shelley McCann, Jennifer Beauchemin, Elizabeth Weisse, Fatoumata Barry +7 more

A two-cohort study on the association between the gut microbiota and bone density, microarchitecture, and strength

Frontiers in Endocrinology(2023)10.3389/fendo.2023.1237727

N/A

0DataRank · unranked

29 citations

Eric Orwoll, Curtis Huttenhower, Xochitl C. Morgan, Thomas Kuntz, Lauren J. McIver +9 more

Diet and gut microbial associations in irritable bowel syndrome according to disease subtype

Gut Microbes(2023)10.1080/19490976.2023.2262130

N/A

0DataRank · unranked

27 citations

Wenjie Ma, Raaj S. Mehta, Long H. Nguyen, Mingyang Song, David A. Drew +9 more

Association Between Bowel Movement Pattern and Cognitive Function

Neurology(2023)10.1212/wnl.0000000000207849

N/A

0DataRank · unranked

18 citations

Yanping Li, Zhendong Mei, Changzheng Yuan, Jae H. Kang, Francine Grodstein +7 more

Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects

Cell Host & Microbe(2023)10.1016/j.chom.2023.05.013

N/A

0DataRank · unranked

20 citations

Claudia Eberl, Simon Woelfel, Diana Ring, Adrian Fritz, Simone Herp +7 more

Profiling novel lateral gene transfer events in the human microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.08.552500

N/A

0DataRank · unranked

13 citations

Étienne Nzabarushimana, Dennis Wong, Chengwei Luo, Robert G. Beiko, Morgan G. I. Langille +4 more

Data from Association of Fusobacterium nucleatum with Specific T-cell Subsets in the Colorectal Carcinoma Microenvironment

(2023)10.1158/1078-0432.c.6530000

N/A

0DataRank · unranked

0 citations

Koichiro Haruki, Mai Chan Lau, Andressa Dias Costa, Juha P. Väyrynen, Tomotaka Ugai +36 more

Data from Association of Fusobacterium nucleatum with Specific T-cell Subsets in the Colorectal Carcinoma Microenvironment

(2023)10.1158/1078-0432.c.6530000.v1

N/A

0DataRank · unranked

0 citations

Koichiro Haruki, Mai Chan Lau, Andressa Dias Costa, Juha P. Väyrynen, Tomotaka Ugai +36 more

Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria

Cell(2024)10.1016/j.cell.2024.03.014

N/A

0DataRank · unranked

226 citations

Martin Stražar, Ahmed M. Mohamed, Julián Ávila-Pacheco, Rebecca L. Walker, Tina Lebar +21 more

Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries

Cell(2024)10.1016/j.cell.2024.06.018

N/A

0DataRank · unranked

86 citations

Long H. Nguyen, Paolo Manghi, Hanseul Kim, Edoardo Pasolli, Sergio Andreu‐Sánchez +31 more

Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts

Nature Microbiology(2024)10.1038/s41564-024-01858-9

N/A

0DataRank · unranked

72 citations

Amrisha Bhosle, Kai Wang, Roberta Marconi, Marta Selma‐Royo, Liviana Ricci +26 more

Metatranscriptomics-guided discovery and characterization of a polyphenol-metabolizing gut microbial enzyme

Cell Host & Microbe(2024)10.1016/j.chom.2024.10.002

N/A

0DataRank · unranked

34 citations

Chi Hieu Le, Raaj S. Mehta, Xueyang Dong, Lindsey M. Pieper, Lorenzo Ramirez +7 more

Gut microbiome composition and metabolic activity in women with diverticulitis

Nature Communications(2024)10.1038/s41467-024-47859-4

N/A

0DataRank · unranked

28 citations

Yiqing Wang, Long H. Nguyen, Raaj S. Mehta, Jane Ha, Amrisha Bhosle +7 more

An Empirical Dietary Pattern Associated With the Gut Microbial Features in Relation to Colorectal Cancer Risk

Gastroenterology(2024)10.1053/j.gastro.2024.07.040

N/A

0DataRank · unranked

20 citations

Chun‐Han Lo, Raaj S. Mehta, Long H. Nguyen, Yiqing Wang, Wenjie Ma +21 more

Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease

Molecular Systems Biology(2024)10.1038/s44320-024-00027-8

N/A

0DataRank · unranked

11 citations

Sena Bae, Yancong Zhang, Eunyoung Chun, Julián Ávila-Pacheco, Ludwig Geistlinger +11 more

F. prausnitzii potentially modulates the association between citrus intake and depression

Microbiome(2024)10.1186/s40168-024-01961-3

N/A

0DataRank · unranked

14 citations

Allison A. Chan, Wenjie Ma, Fenglei Wang, Long Hoang Nguyen, Dong D. Wang +5 more

Altered Microbial Transcription in Long-term Proton Pump Inhibitor Use: Findings From a United States Cohort Study

Gastroenterology(2024)10.1053/j.gastro.2024.03.026

N/A

0DataRank · unranked

6 citations

Étienne Nzabarushimana, Curtis Huttenhower, Andrew T. Chan, Long H. Nguyen, Hanseul Kim

Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.19.580813

N/A

0DataRank · unranked

25 citations

Andrea Silverj, Aitor Blanco‐Míguez, Paolo Manghi, Omar Rota‐Stabelli, Vitor Heidrich +14 more

Evaluating metagenomic analyses for undercharacterized environments: what’s needed to light up the microbial dark matter?

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.08.622677

N/A

0DataRank · unranked

1 citations

Lauren J. McIver, Aaron M. Walsh, Yancong Zhang, Jacob T. Nearing, Francesco Asnicar +8 more

Timing and duration of dog walking and dog owner’s chronotype in relation to incident depression risk among middle to older-aged female nurses

PLoS ONE(2024)10.1371/journal.pone.0296922

N/A

0DataRank · unranked

0 citations

Susanne Strohmaier, Carri Westgarth, Curtis Huttenhower, Heather Eliassen, Shahab Haghayegh +9 more

Multi-omic analysis reveals transkingdom gut dysbiosis in metabolic dysfunction-associated steatotic liver disease

Nature Metabolism(2025)10.1038/s42255-025-01318-6

N/A

0DataRank · unranked

21 citations

Paul V. Nelson, Étienne Nzabarushimana, Jiaxian Shen, Jordan Jensen, Amrisha Bhosle +16 more

Virulence factor discovery identifies associations between the Fic gene family and Fap2 + fusobacteria in colorectal cancer microbiomes

mBio(2025)10.1128/mbio.03732-24

N/A

0DataRank · unranked

10 citations

Duhyun Ko, Monia Michaud, Eric A. Franzosa, Xochitl C. Morgan, Curtis Huttenhower +2 more

A Small-Molecule Inhibitor of Gut Bacterial Urease Protects the Host from Liver Injury

ACS Chemical Biology(2025)10.1021/acschembio.3c00556

N/A

0DataRank · unranked

6 citations

Yindi Jiang, Vladimir Yeliseyev, Yancong Zhang, Eric A. Franzosa, Zhipeng A. Wang +6 more

Dietary Patterns and Incident Chronic Constipation in Three Prospective Cohorts of Middle- and Older-Aged Adults

Gastroenterology(2025)10.1053/j.gastro.2025.06.020

N/A

0DataRank · unranked

5 citations

Braden Kuo, Madeline Berschback, Curtis Huttenhower, Andrew T. Chan, Kyle Staller +1 more

Inflammatory disease microbiomes share a functional pathogenicity predicted by C-reactive protein

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.14.633015

N/A

0DataRank · unranked

0 citations

Lorenza Bartu, Ilaria Mogno, Alice Chen-Liaw, Tamar Plitt, Drew Helmus +22 more

Comparing the Metagenomic Performance of Stools Collected from Custom Cards and 95% Ethanol in Epidemiologic Studies

Cancer Epidemiology Biomarkers & Prevention(2025)10.1158/1055-9965.epi-25-0157

N/A

0DataRank · unranked

0 citations

Ling Liu, Kai Wang, Christine Everett, A. Heather Eliassen, Walter C. Willett +10 more

Gut Microbial Variations Associated With Proton Pump Inhibitor Use in the Boston Puerto Rican Health Study

Pharmacology Research & Perspectives(2025)10.1002/prp2.70205

N/A

0DataRank · unranked

0 citations

Xochitl C. Morgan, Hanseul Kim, Tammy Scott, Mahdi Garelnabi, Jong Soo Lee +6 more

Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men

Gastroenterology(2020)10.1053/j.gastro.2019.12.029

N/A

0DataRank · unranked

189 citations

Wenjie Ma, Dong D. Wang, Yin Cao, Himel Mallick, Teklu K. Gerbaba +20 more

Strain-level epidemiology of microbial communities and the human microbiome

Genome Medicine(2020)10.1186/s13073-020-00765-y

N/A

0DataRank · unranked

157 citations

Long H. Nguyen, Eric A. Franzosa, Curtis Huttenhower, Yan Yan

Delivery Mode Affects Stability of Early Infant Gut Microbiota

Cell Reports Medicine(2020)10.1016/j.xcrm.2020.100156

N/A

0DataRank · unranked

235 citations

Chiara Mazzoni, Larson Hogstrom, Allison Bryant, Agnès Bergerat, Avital Cher +10 more

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

Genome biology(2020)10.1186/s13059-020-02042-y

N/A

0DataRank · unranked

128 citations

Edoardo Pasolli, Francesco Asnicar, Kun D. Huang, Adrian Tett, Serena Manara +17 more

Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease

Nature Microbiology(2020)10.1038/s41564-019-0655-7

N/A

0DataRank · unranked

104 citations

Eric A. Franzosa, Jason Bishai, John W. Annand, Akihiko Oka, Jason Lloyd‐Price +12 more

Determinants of Staphylococcus aureus carriage in the developing infant nasal microbiome

Genome biology(2020)10.1186/s13059-020-02209-7

N/A

0DataRank · unranked

37 citations

Eric A. Franzosa, Tiffany Hsu, Regina Joice Cordy, Ayala Maayan‐Metzger, Hanaa Jaber +7 more

Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study

UNC Libraries(2020)10.17615/z68h-gy11

N/A

0DataRank · unranked

1 citations

Jonathan Evans, Francisco Sylvester, David J. Keljo, Joel R. Rosh, Wallace Crandall +38 more

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.19.388223

N/A

0DataRank · unranked

145 citations

Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan +11 more

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

eLife(2021)10.7554/elife.65088

N/A

0DataRank · unranked

2321 citations

Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan +12 more

A bacterial bile acid metabolite modulates Treg activity through the nuclear hormone receptor NR4A1

Cell Host & Microbe(2021)10.1016/j.chom.2021.07.013

N/A

0DataRank · unranked

286 citations

Saiyu Hang, Yuan Fang, Sena Bae, Yancong Zhang, Minghao Zhang +11 more

Association of Fusobacterium nucleatum with Specific T-cell Subsets in the Colorectal Carcinoma Microenvironment

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-20-4009

N/A

0DataRank · unranked

96 citations

Koichiro Haruki, Mai Chan Lau, Andressa Dias Costa, Juha P. Väyrynen, Tomotaka Ugai +36 more

The Sulfur Microbial Diet Is Associated With Increased Risk of Early-Onset Colorectal Cancer Precursors

Gastroenterology(2021)10.1053/j.gastro.2021.07.008

N/A

0DataRank · unranked

95 citations

Yin Cao, Jinhee Hur, Raaj S. Mehta, Daniel Sikavi, Yiqing Wang +11 more

Statistical approaches for differential expression analysis in metatranscriptomics

Bioinformatics(2021)10.1093/bioinformatics/btab327

N/A

0DataRank · unranked

78 citations

Kelsey N. Thompson, Curtis Huttenhower, Eric A. Franzosa, Yancong Zhang

Association Between the Sulfur Microbial Diet and Risk of Colorectal Cancer

JAMA Network Open(2021)10.1001/jamanetworkopen.2021.34308

N/A

0DataRank · unranked

71 citations

Long H. Nguyen, Raaj S. Mehta, Mingyang Song, Curtis Huttenhower, Andrew T. Chan +1 more

Plant-Based Diet Index and Metabolic Risk in Men: Exploring the Role of the Gut Microbiome

Journal of Nutrition(2021)10.1093/jn/nxab175

N/A

0DataRank · unranked

52 citations

Dong D. Wang, Ambika Satija, Kerry L. Ivey, Jun Li, Jeremy E. Wilkinson +8 more

The Gut Microbiome Modifies the Association Between a Mediterranean Diet and Diabetes in USA Hispanic/ Latino Population

The Journal of Clinical Endocrinology & Metabolism(2021)10.1210/clinem/dgab815

N/A

0DataRank · unranked

33 citations

Qibin Qi, Zheng Wang, Mykhaylo Usyk, Daniela Sotres‐Alvarez, Josiemer Mattei +10 more

The oral microbiome in relation to pancreatic cancer risk in African Americans

British Journal of Cancer(2021)10.1038/s41416-021-01578-5

N/A

0DataRank · unranked

28 citations

Jeremy E. Wilkinson, Dominique S. Michaud, Qiuyin Cai, Hanna Gerlovin, Lisa B. Signorello +9 more

Human gut bacteria produce T H 17-modulating bile acid metabolites

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.08.425913

N/A

0DataRank · unranked

10 citations

Lina Yao, Yancong Zhang, Sena Bae, Gabriel D. D’Agostino, Eunha Kim +14 more

A Statistical Model for Describing and Simulating Microbial Community Profiles

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.26.437146

N/A

0DataRank · unranked

8 citations

Boyu Ren, Himel Mallick, Yo Sup Moon, Emma Schwager, Sagun Maharjan +7 more

High-sensitivity pattern discovery in large, paired multi-omic datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.11.468183

N/A

0DataRank · unranked

8 citations

Kathleen Sucipto, Ali Rahnavard, Eric A. Franzosa, Lauren J. McIver, Jason Lloyd‐Price +7 more

A Bacterial Bile Acid Metabolite Modulates T reg Activity through the Nuclear Hormone Receptor NR4A1

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.08.425963

N/A

0DataRank · unranked

2 citations

Saiyu Hang, Yuan Fang, Sena Bae, Yancong Zhang, Gang Wang +8 more

Strain-level fitness in the gut microbiome is an emergent property of glycans and a single metabolite

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