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Accessible, curated metagenomic data through ExperimentHub

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/103085Source: DataRank Database

Accessible, curated metagenomic data through ExperimentHub is a dataset published in bioRxiv (Cold Spring Harbor Laboratory) (2017). On theSindex it has a DataRank of 2.0, placing it in the top 10.5% of the data-sharing corpus. It has been cited 65 times, with 56 citing works in its 1-hop citation network.

Top 10%percentile

2.0DataRank

Ranks in the top 10% for downstream scientific impact

Data paper Open Access65 citations · 56 citing works in its network

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DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (10 grants)OA: greenTopics (40)IDs (PubMed, OpenAlex)SDGs (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (1/3)

Dataset classification

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DataRank Breakdown

Base Score 31%Citation Network 69%

Base Score Contribution

0.628

From this paper's citation signal

Citation Network Contribution

1.4

From 41 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 56 citers.

Host variables confound gut microbiota studies of human disease
Nature2020594 citations41 referencesContributes 0.156
Microbiome and health implications for ethnic minorities after enforced lifestyle changes
Nature Medicine2020101 citations49 referencesContributes 0.094
WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data
BMC Genomics201817 citations31 referencesContributes 0.093
Disease Prediction Using Synthetic Image Representations of Metagenomic Data and Convolutional Neural Networks
201918 citations35 referencesContributes 0.084
Altered metabolome and microbiome features provide clues in understanding irritable bowel syndrome and depression comorbidity
The ISME Journal2021123 citations62 referencesContributes 0.078

Authors (14)

Lucas Schiffer ORCID,Paolo Manghi ORCID,Audrey Renson ORCID,Valerie Obenchain,Duy Tin Truong ORCID

Live enrichment

PubMed:23304386 OpenAlex:https://openalex.org/W2583479953

National Institutes of Health

Grant: 5U24CA180996-08

Cancer Genomics: Integrative and Salable Solutions in R/Bioconductor

European Commission

Grant: 716575

Culture-free strain-level population genomics to identify disappearing human-associated microbes in the westernized world

National Institutes of Health

Grant: 1R03CA191447-01A1

Validation and Clinical Relevance of Ovarian Cancer Molecular Subtypes

European Commission

Grant: 618833

Computational shotgun metagenomics to detail mother-to-infant vertical microbiome transmission and microbiome-pathogen interaction in Cystic Fibrosis

European Commission

Grant: 707345

Assembly-based discovery of uncharacterized human microbiome members and their tracking across individuals and time

National Science Foundation

Grant: 1126113

MRI: Instrumentation for Enabling Data Analysis, Sharing, Storage, and Preservation

National Institutes of Health

Grant: 1R21AI121784-01

The representative microbiome: social determinants and tools for population research

National Science Foundation

Grant: 0958379

II-EN: CUNY Computing Research Infrastructure

National Institutes of Health

Grant: 3U24CA180996-10S1

Cancer Genomics: Integrative and Scalable Solutions in R/Bioconductor

National Science Foundation

Grant: 0855217

II-EN: City University of New York - Computing Research Infrastructure

greenLicense: cc-by-nc

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2017/06/21/103085.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/103085

repositoryhttps://doi.org/10.1101/103085

repositoryhttp://www.biorxiv.org/content/early/2017/06/21/103085.article-info

Fields of Study

Gut microbiota and healthMetabolomics and Mass Spectrometry StudiesGenomics and Phylogenetic Studies0301 basic medicine0303 health sciences03 medical and health sciences

Keywords

MetagenomicsComputer scienceIdentification (biology)MetadataSoftwarePreprocessorMicrobiomeHuman Microbiome ProjectBioconductorData miningCloud computingComputational biologyData scienceBiologyBioinformaticsWorld Wide WebHuman microbiomeArtificial intelligenceEcology570Genome, HumanMicrobiotaCell BiologyBiochemistry004Gastrointestinal MicrobiomeSpecies SpecificityGenome, ArchaealBiotechnology; Biochemistry; Molecular Biology; Cell BiologyHumansGenome, FungalMolecular BiologyGenome, BacterialBiotechnology

Sustainable Development Goals

SDG 3: 3. Good healthSDG 0: Industry, innovation and infrastructure