David S. Fischer

Technical University of Munich

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.4Author DataRank

Indexed papers

9in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 9 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8

Top 4%

5.4DataRank

Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Papers

Driven by 45 papers — median percentile 0. Top paper: “Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics”.

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

Nature Medicine(2021)10.1038/s41591-020-01227-z

N/A

8.2DataRank · unranked

378 citations

Malte D. Luecken, Gökcen Eraslan, Lisa Sikkema, Avinash Waghray, Graham Heimberg +95 more

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8

Top 4%

5.4DataRank

Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.22.423933

N/A

4.6DataRank · unranked

123 citations

Marvin Thielert, Catherine G. Vasilopoulou, Constantin Ammar, Fabian Coscia, Andreas Mund +13 more

Inferring population dynamics from single-cell RNA-sequencing time series data

Nature Biotechnology(2019)10.1038/s41587-019-0088-0

N/A

3.2DataRank · unranked

124 citations

Anna K. Fiedler, Eric M. Kernfeld, Ryan M. J. Genga, Aimée Bastidas-Ponce, Mostafa Bakhti +6 more

Squidpy: a scalable framework for spatial single cell analysis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.19.431994

N/A

3.0DataRank · unranked

71 citations

Hannah Spitzer, Michal Klein, David S. Fischer, Anna Christina Schaar, Louis Benedikt Kuemmerle +8 more

Graph representation learning for single-cell biology

Current Opinion in Systems Biology(2021)10.1016/j.coisb.2021.05.008

N/A

1.7DataRank · unranked

53 citations

David S. Fischer, Stephan Günnemann, Fabian Joachim Theis, Leon Hetzel

Toward modeling metabolic state from single-cell transcriptomics

Molecular Metabolism(2022)10.1016/j.molmet.2021.101396

N/A

1.7DataRank · unranked

66 citations

David S. Fischer, Fabian Joachim Theis, Karin Hrovatin

EpiScanpy: integrated single-cell epigenomic analysis

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/648097

N/A

1.6DataRank · unranked

30 citations

David S. Fischer, Fabian Joachim Theis, Maria Colomé‐Tatché, Maria Lucia Richter, Anna Danese

Asc-1 regulates white versus beige adipocyte fate in a subcutaneous stromal cell population

Nature Communications(2021)10.1038/s41467-021-21826-9

N/A

1.4DataRank · unranked

35 citations

Irem Altun, Ruth Karlina, Viktorian Miok, Tobias Wiedemann, David S. Fischer +16 more

Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’

Nature Communications(2021)10.1038/s41467-021-24730-4

N/A

1.1DataRank · unranked

40 citations

Meshal Ansari, Karolin I. Wagner, Sebastian Jarosch, Yiqi Huang, Christoph H. Mayr +28 more

Sfaira accelerates data and model reuse in single cell genomics

Genome Biology(2021)10.1186/s13059-021-02452-6

N/A

1.1DataRank · unranked

34 citations

Leander Dony, Martin König, Abdul Moeed, Luke Zappia, Lukas Heumos +5 more

The Human and Mouse Enteric Nervous System at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.08.003

N/A

0.948DataRank · unranked

556 citations

Christopher S. Smillie, Nicholas Van Wittenberghe, Maria Ericsson, Gabriel K. Griffin, David S. Fischer +14 more

Concepts and limitations for learning developmental trajectories from single cell genomics

Development(2019)10.1242/dev.170506

N/A

0.839DataRank · unranked

268 citations

Maren Büttner, David S. Fischer, Marius Lange, Volker Bergen, Heiko Lickert +2 more

Single cells make big data: New challenges and opportunities in transcriptomics

Current Opinion in Systems Biology(2017)10.1016/j.coisb.2017.07.004

N/A

0.833DataRank · unranked

257 citations

Sophie Tritschler, Francesca Finotello, Fabian Joachim Theis, Lukas M. Simon, Florian Wolf +2 more

Modeling intercellular communication in tissues using spatial graphs of cells

Nature Biotechnology(2022)10.1038/s41587-022-01467-z

N/A

0.792DataRank · unranked

196 citations

Anna Christina Schaar, Fabian Joachim Theis, David S. Fischer

Identification and characterization of distinct brown adipocyte subtypes in C57BL/6J mice

Life Science Alliance(2020)10.26508/lsa.202000924

N/A

0.750DataRank · unranked

22 citations

Dominik Lutter, Viktorian Miok, David S. Fischer, Irem Altun, Theresa Schöttl +20 more

Predicting antigen specificity of single T cells based on TCR CDR 3 regions

Molecular Systems Biology(2020)10.15252/msb.20199416

N/A

0.683DataRank · unranked

94 citations

Yihan Wu, Benjamin Schubert, Fabian Joachim Theis, David S. Fischer

Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data

Bioinformatics(2020)10.1093/bioinformatics/btaa198

N/A

0.667DataRank · unranked

14 citations

David S. Fischer, Fabian Joachim Theis, Antonio Scialdone, Carsten Marr, Philipp Angerer

Modeling fragment counts improves single-cell ATAC-seq analysis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.04.490536

N/A

0.661DataRank · unranked

14 citations

David S. Fischer, Vicente A. Yépez, Fabian Joachim Theis, Julia-Stefanie Frick, Laura D. Martens

Delineating the effective use of self-supervised learning in single-cell genomics

Nature Machine Intelligence(2024)10.1038/s42256-024-00934-3

N/A

0.595DataRank · unranked

21 citations

Mojtaba Bahrami, Yufan Xia, David S. Fischer, Fabian Joachim Theis, Till Richter

Impulse model-based differential expression analysis of time course sequencing data

Nucleic Acids Research(2018)10.1093/nar/gky675

N/A

0.553DataRank · unranked

39 citations

Fabian Joachim Theis, Nir Yosef, David S. Fischer

Group Testing for SARS-CoV-2 Allows for Up to 10-Fold Efficiency Increase Across Realistic Scenarios and Testing Strategies

Frontiers in Public Health(2021)10.3389/fpubh.2021.583377

N/A

0.538DataRank · unranked

35 citations

Tim Fuchs, Pavol Harar, Dennis Elbrächter, David S. Fischer, Julius Berner +6 more

Sfaira accelerates data and model reuse in single cell genomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.419036

N/A

0.522DataRank · unranked

10 citations

Leander Dony, Martin König, Abdul Moeed, Luke Zappia, Sophie Tritschler +4 more

Learning cell communication from spatial graphs of cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.11.451750

N/A

0.515DataRank · unranked

30 citations

Anna Christina Schaar, Fabian Joachim Theis, David S. Fischer

Inhibition of reticulocyte ribosomal protein synthesis by chloramphenicol in a cell-free system

Biochemical Pharmacology(1965)10.1016/0006-2952(65)90249-2

N/A

0.511DataRank · unranked

5 citations

David S. Fischer

Scaling cross-tissue single-cell annotation models

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.07.561331

N/A

0.469DataRank · unranked

7 citations

David S. Fischer, Evan Biederstedt, Fabian Joachim Theis, Alexandra–Chloé Villani, Felix H. Fischer

Graph neural networks learn emergent tissue properties from spatial molecular profiles

Nature Communications(2025)10.1038/s41467-025-63758-8

N/A

0.415DataRank · unranked

12 citations

Sabrina Richter, Ali Ertürk, David S. Fischer, Fabian Joachim Theis, Mayar Ali

Cell-type specific impact of glucocorticoid receptor activation on the developing brain

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.09.897868

N/A

0.404DataRank · unranked

8 citations

Leander Dony, Anthi C. Krontira, David S. Fischer, Simone Roeh, Rossella Di Giaimo +14 more

Group testing for SARS-CoV-2 allows for up to 10-fold efficiency increase across realistic scenarios and testing strategies

medRxiv(2020)10.1101/2020.04.30.20085290

N/A

0.396DataRank · unranked

13 citations

Tim Fuchs, Pavol Harar, Dennis Elbrächter, David S. Fischer, Julius Berner +6 more

Learning Tn5 Sequence Bias from ATAC-seq on Naked Chromatin

Lecture Notes in Computer Science(2020)10.1007/978-3-030-61609-0_9

N/A

0.364DataRank · unranked

3 citations

David S. Fischer, Fabian Joachim Theis, Meshal Ansari

Graph neural networks learn emergent tissue properties from spatial molecular profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.08.519537

N/A

0.348DataRank · unranked

7 citations

Mayar Ali, Sabrina Richter, Ali Ertürk, Fabian Joachim Theis, David S. Fischer

Delineating the Effective Use of Self-Supervised Learning in Single-Cell Genomics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.16.580624

N/A

0.269DataRank · unranked

5 citations

Mojtaba Bahrami, Yufan Xia, David S. Fischer, Fabian Joachim Theis, Till Richter

Predicting antigen-specificity of single T-cells based on TCR CDR3 regions

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/734053

N/A

0.269DataRank · unranked

5 citations

Yihan Wu, Benjamin Schubert, Fabian Joachim Theis, David S. Fischer

Single-cell RNA sequencing reveals in vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’

medRxiv(2020)10.1101/2020.12.07.20245274

N/A

0.208DataRank · unranked

3 citations

Meshal Ansari, Sebastian Jarosch, Yiqi Huang, Christoph H. Mayr, Maximilian Strunz +28 more

Impulse model-based differential expression analysis of time course sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/113548

N/A

0.208DataRank · unranked

3 citations

Fabian Joachim Theis, Nir Yosef, David S. Fischer

Automatic identification of relevant genes from low-dimensional embeddings of single cell RNAseq data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.21.000398

N/A

0.104DataRank · unranked

1 citations

David S. Fischer, Fabian Joachim Theis, Antonio Scialdone, Carsten Marr, Philipp Angerer

EpiScanpy: integrated single-cell epigenomic analysis

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4292081

Top 100%

0DataRank

Top 100%0 citations

Maria Lucia Richter, Kridsadakorn Chaichoompu, David S. Fischer, Fabian Joachim Theis, Maria Colomé‐Tatché +1 more

Theislab sfaira Model Repository

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.4836516

Top 100%

0DataRank

Top 100%0 citations

David S. Fischer, Fabian Joachim Theis, Leander Dony

Additional file 6 of MPRAnalyze: statistical framework for massively parallel reporter assays

Figshare(2019)10.6084/m9.figshare.9760601

N/A

0DataRank · unranked

0 citations

David S. Fischer, Anat Kreimer, Nadav Ahituv, Fabian Joachim Theis, Nir Yosef +1 more

EpiScanpy: integrated single-cell epigenomic analysis

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4292082

Top 100%

0DataRank

Top 100%0 citations

Maria Lucia Richter, Kridsadakorn Chaichoompu, David S. Fischer, Fabian Joachim Theis, Maria Colomé‐Tatché +1 more

Theislab sfaira Model Repository

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.4836517

Top 100%

0DataRank

Top 100%0 citations

David S. Fischer, Fabian Joachim Theis, Leander Dony

Additional file 5 of MPRAnalyze: statistical framework for massively parallel reporter assays

Figshare(2019)10.6084/m9.figshare.9760595

Top 100%

0DataRank

Top 100%0 citations

David S. Fischer, Anat Kreimer, Nadav Ahituv, Fabian Joachim Theis, Nir Yosef +1 more

[DEPRECATED] Theislab sfaira Model Repository

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4304659

Top 100%

0DataRank

Top 100%0 citations

David S. Fischer, Fabian Joachim Theis, Leander Dony

Additional file 4 of MPRAnalyze: statistical framework for massively parallel reporter assays

Figshare(2019)10.6084/m9.figshare.9760592

Top 100%

0DataRank

Top 100%0 citations

David S. Fischer, Anat Kreimer, Nadav Ahituv, Fabian Joachim Theis, Nir Yosef +1 more

[DEPRECATED] Theislab sfaira Model Repository

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4304660

Top 100%

0DataRank

Top 100%0 citations

David S. Fischer, Fabian Joachim Theis, Leander Dony

David S. Fischer

Indexed papers

Top data-sharing exemplar

Papers