Seth Blackshaw

Also affiliated with Discovery Institute, Johns Hopkins Medicine

Biochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 65 papers. Top paper: “Quantitative transportomics identifies Kif5a as a major regulator of neurodegeneration”.

Quantitative transportomics identifies Kif5a as a major regulator of neurodegeneration

eLife(2022)10.7554/elife.68148

N/A

1.2DataRank · unranked

35 citations

Lucio M Schiapparelli, Yuanhui Ma, Satoshi Yokota, Melissa Atkins, Xin Xia +10 more

ASCOT identifies key regulators of neuronal subtype-specific splicing

Nature Communications(2020)10.1038/s41467-019-14020-5

N/A

0DataRank · unranked

152 citations

Christopher Wilks, Rone Charles, Patrick J. Leavey, D. Ghosh, Lizhi Jiang +8 more

A single cell transcriptional atlas of early synovial joint development

Development(2020)10.1242/dev.185777

N/A

0DataRank · unranked

46 citations

Yu‐Hao Cheng, Jordan Wilson, Emily Y. Su, Dong Won Kim, Hong Wang +4 more

Epigenetic hallmarks of age-related macular degeneration are recapitulated in a photosensitive mouse model

Human Molecular Genetics(2020)10.1093/hmg/ddaa158

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0DataRank · unranked

16 citations

Les Kallestad, Thanh Hoang, Dominik Lewandowski, Zhiqian Dong, Seth Blackshaw +2 more

Atoh7-independent specification of retinal ganglion cell identity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.27.116954

N/A

0DataRank · unranked

9 citations

Brian S. Clark, Qing Shi, Fion Shiau, Dong Won Kim, Jennifer Langel +9 more

A Clock-Driven Neural Network Critical for Arousal

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.12.989921

N/A

0DataRank · unranked

5 citations

Qiang Liu, Dong Won Kim, Sang‐Soo Lee, Qili Liu, Ian D. Blum +8 more

Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.21.106963

N/A

0DataRank · unranked

3 citations

Kai Liu, Zoe Qianyi Wang, Yi Stephanie Zhang, Abhijith Bathini, Matthew Brown +10 more

Characterization of mWake expression in the murine brain

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.25.114363

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0DataRank · unranked

2 citations

Annette A. Wang, Dong Won Kim, Seth Blackshaw, Mark N. Wu, Benjamin J. Bell

Temperature and species-dependent regulation of browning in retrobulbar fat

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.12.333807

N/A

0DataRank · unranked

1 citations

Dong Won Kim, Jianbo Pan, Nicholas R. Mahoney, Charles G. Eberhart, Jiang Qian +2 more

Regulation of retinal neurogenesis by somatostatin signaling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.26.314104

N/A

0DataRank · unranked

0 citations

Dong Won Kim, Seth Blackshaw, Kurt Weir

Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons

Communications Biology(2021)10.1038/s42003-020-01616-7

N/A

0DataRank · unranked

76 citations

Kai Liu, Zoe Qianyi Wang, Yi Stephanie Zhang, Abhijith Bathini, Matthew Brown +10 more

An inducible Cre mouse for studying roles of the RPE in retinal physiology and disease

JCI Insight(2021)10.1172/jci.insight.146604

N/A

0DataRank · unranked

36 citations

Susie Suh, David E. Einstein, Henri Leinonen, Zhiqian Dong, Sriganesh Ramachandra Rao +7 more

Turning lead into gold: reprogramming retinal cells to cure blindness

Journal of Clinical Investigation(2021)10.1172/jci146134

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0DataRank · unranked

52 citations

Joshua R. Sanes, Seth Blackshaw

A potential role for somatostatin signaling in regulating retinal neurogenesis

Scientific Reports(2021)10.1038/s41598-021-90554-3

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0DataRank · unranked

10 citations

Dong Won Kim, Seth Blackshaw, Kurt Weir

Temperature and species-dependent regulation of browning in retrobulbar fat

Scientific Reports(2021)10.1038/s41598-021-82672-9

N/A

0DataRank · unranked

2 citations

Dong Won Kim, Jianbo Pan, Nicholas R. Mahoney, Charles G. Eberhart, Jiang Qian +2 more

Ptbp1 deletion does not induce glia-to-neuron conversion in adult mouse retina and brain

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.04.462784

N/A

0DataRank · unranked

21 citations

Dong Won Kim, Haley Appel, Nicole Pannullo, Patrick J. Leavey, Manabu Ozawa +6 more

Multi-omic Analysis of Developing Human Retina and Organoids Reveals Cell-Specific Cis-Regulatory Elements and Mechanisms of Non-Coding Genetic Disease Risk

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.31.454254

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0DataRank · unranked

4 citations

Andrew E. Timms, Sarah Giles, Sarah Harkins‐Perry, Pin Lyu, Thanh Hoang +8 more

Notch inhibition promotes regeneration and immunosuppression supports cone survival in a zebrafish model of inherited retinal dystrophy

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.19.473212

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0DataRank · unranked

1 citations

Ping Song, Patrick Boyd, Sarah E. Grabinski, Thanh Hoang, Adrian Reich +6 more

Single-cell analysis of early chick hypothalamic development reveals that hypothalamic cells are induced from prethalamic-like progenitors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.09.438683

N/A

0DataRank · unranked

0 citations

Elsie Place, Kavitha Chinnaiya, Elizabeth Manning, Changyu Sun, Weina Dai +5 more

Lhx2 is a progenitor-intrinsic modulator of Sonic Hedgehog signaling during early retinal neurogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.24.441277

N/A

0DataRank · unranked

0 citations

Patrick J. Gordon, John A. Gaynes, Alexandra Fuller, Randy Ringuette, Clayton P. Santiago +5 more

Signaling and transcriptional networks governing late synovial joint development

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.25.457383

N/A

0DataRank · unranked

0 citations

Yu‐Hao Cheng, Emily Y. Su, Yuqi Tan, Dong Won Kim, Hong Wang +4 more

The neural cell adhesion molecule NrCAM regulates development of hypothalamic tanycytes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.15.472761

N/A

0DataRank · unranked

0 citations

Kavitha Chinnaiya, Dong Won Kim, Sarah Brown, Ian Stewart, Sarah C. Robins +9 more

In vivo base editing rescues cone photoreceptors in a mouse model of early-onset inherited retinal degeneration

Nature Communications(2022)10.1038/s41467-022-29490-3

N/A

0DataRank · unranked

94 citations

Susie Suh, Andrzej T. Foik, Henri Leinonen, Gregory A. Newby, Xin D. Gao +11 more

Cell-specific cis-regulatory elements and mechanisms of non-coding genetic disease in human retina and retinal organoids

Developmental Cell(2022)10.1016/j.devcel.2022.02.018

N/A

0DataRank · unranked

88 citations

Andrew E. Timms, Sarah Giles, Sarah Harkins‐Perry, Pin Lyu, Thanh Hoang +8 more

Ectopic insert-dependent neuronal expression of GFAP promoter-driven AAV constructs in adult mouse retina

Frontiers in Cell and Developmental Biology(2022)10.3389/fcell.2022.914386

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0DataRank · unranked

50 citations

Haley Appel, Nicole Pannullo, Thanh Hoang, Seth Blackshaw, Nguyet Le

Inhibition of ceramide accumulation in AdipoR1–/– mice increases photoreceptor survival and improves vision

JCI Insight(2022)10.1172/jci.insight.156301

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0DataRank · unranked

47 citations

Andrzej T. Foik, Roman Šmidák, Elliot H. Choi, Jianye Zhang, Thanh Hoang +17 more

Cell-specific regulation of gene expression using splicing-dependent frameshifting

Nature Communications(2022)10.1038/s41467-022-33523-2

N/A

0DataRank · unranked

39 citations

Alexei M. Bygrave, Clayton P. Santiago, Rogger P. Carmen‐Orozco, Vickie Trinh, Minzhong Yu +31 more

LRLoop: a method to predict feedback loops in cell–cell communication

Bioinformatics(2022)10.1093/bioinformatics/btac447

N/A

0DataRank · unranked

35 citations

Pin Lyu, Junyao Jiang, Feng‐Quan Zhou, Jie Wang, Seth Blackshaw +2 more

Notch Inhibition Promotes Regeneration and Immunosuppression Supports Cone Survival in a Zebrafish Model of Inherited Retinal Dystrophy

Journal of Neuroscience(2022)10.1523/jneurosci.0244-22.2022

N/A

0DataRank · unranked

30 citations

Ping Song, Patrick Boyd, Sarah E. Grabinski, Thanh Hoang, Adrian Reich +6 more

Single-cell analysis of early chick hypothalamic development reveals that hypothalamic cells are induced from prethalamic-like progenitors

Cell Reports(2022)10.1016/j.celrep.2021.110251

N/A

0DataRank · unranked

39 citations

Elsie Place, Kavitha Chinnaiya, Elizabeth Manning, Changyu Sun, Weina Dai +6 more

Fatty acid-binding proteins and fatty acid synthase influence glial reactivity and promote the formation of Müller glia-derived progenitor cells in the chick retina

Development(2022)10.1242/dev.200127

N/A

0DataRank · unranked

35 citations

Allen Tangeman, Heithem M. El‐Hodiri, Evan C. Hawthorn, Maddie Hathoot, S A Blum +4 more

Loss of Function of the Neural Cell Adhesion Molecule NrCAM Regulates Differentiation, Proliferation and Neurogenesis in Early Postnatal Hypothalamic Tanycytes

Frontiers in Neuroscience(2022)10.3389/fnins.2022.832961

N/A

0DataRank · unranked

14 citations

Kavitha Chinnaiya, Dong Won Kim, Sarah Brown, Iain Stewart, Sarah C. Robins +9 more

Ectopic insert-dependent neuronal expression of GFAP promoter-driven AAV constructs in adult mouse retina

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.06.487191

N/A

0DataRank · unranked

4 citations

Haley Appel, Nicole Pannullo, Thanh Hoang, Seth Blackshaw, Nguyet Le

Cell-specific regulation of gene expression using splicing-dependent frameshifting

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.02.481623

N/A

0DataRank · unranked

2 citations

Alexei M. Bygrave, Clayton P. Santiago, Rogger P. Carmen‐Orozco, Vickie Trinh, Minzhong Yu +29 more

LRLoop: Feedback loops as a design principle of cell-cell communication

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.04.479174

N/A

0DataRank · unranked

1 citations

Pin Lyu, Junyao Jiang, Feng‐Quan Zhou, Jie Wang, Seth Blackshaw +2 more

Cell-specific regulation of gene expression using splicing-dependent frameshifting.

Research Square(2022)10.21203/rs.3.rs-1416757/v1

N/A

0DataRank · unranked

0 citations

Jonathan P. Ling, Alexei M. Bygrave, Clayton P. Santiago, Rogger P. Carmen‐Orozco, Vickie Trinh +28 more

Transretinal migration of astrocytes and brain/spinal cord-like cells arising from transplanted human retinal organoids

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.12.491655

N/A

0DataRank · unranked

0 citations

Clayton P. Santiago, Akin Sogunro, Gregory Konar, Ming‐Wen Hu, Minda M. McNally +14 more

Pantr2 , a trans-acting lncRNA, modulates the differentiation potential of neural progenitors in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.07.511381

N/A

0DataRank · unranked

0 citations

Saki Takayangi, Thanh Hoang, Briana L. Winer, Seth Blackshaw, Loyal A. Goff +1 more

Cellular and Fibrillar Collagen Analyses in an Animal Model of Retinal Detachment-Related Proliferative Vitreoretinopathy Reveals a Defined Transition to Chronic Fibrosis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.14.520462

N/A

0DataRank · unranked

0 citations

Clayton P. Santiago, Yuchen Lu, Antoinette Price, Minda M. McNally, William Schubert +4 more

Retinal ganglion cell repopulation for vision restoration in optic neuropathy: a roadmap from the RReSTORe Consortium

Molecular Neurodegeneration(2023)10.1186/s13024-023-00655-y

N/A

0DataRank · unranked

84 citations

Erika A. Aguzzi, Julie Cho, Michael James Gilhooley, Casey Keuthan, Ziming Luo +95 more

Common and divergent gene regulatory networks control injury-induced and developmental neurogenesis in zebrafish retina

Nature Communications(2023)10.1038/s41467-023-44142-w

N/A

0DataRank · unranked

67 citations

María Iribarne, Dmitri Serjanov, Yijie Zhai, Thanh Hoang, Leah J. Campbell +9 more

Ptbp1 deletion does not induce astrocyte-to-neuron conversion

Nature(2023)10.1038/s41586-023-06066-9

N/A

0DataRank · unranked

60 citations

Dong Won Kim, Haley Appel, Manabu Ozawa, Sika Zheng, Juhyun Kim +2 more

Molecular mechanisms controlling vertebrate retinal patterning, neurogenesis, and cell fate specification

Trends in Genetics(2023)10.1016/j.tig.2023.06.002

N/A

0DataRank · unranked

45 citations

Patrick J. Leavey, Haley Appel, Neoklis Makrides, Seth Blackshaw, Xin Zhang

Single-cell transcriptome analysis of xenotransplanted human retinal organoids defines two migratory cell populations of nonretinal origin

Stem Cell Reports(2023)10.1016/j.stemcr.2023.04.004

N/A

0DataRank · unranked

32 citations

Clayton P. Santiago, Akin Sogunro, Gregory Konar, Ming‐Wen Hu, Minda M. McNally +18 more

A clock-dependent brake for rhythmic arousal in the dorsomedial hypothalamus

Nature Communications(2023)10.1038/s41467-023-41877-4

N/A

0DataRank · unranked

14 citations

Benjamin J. Bell, Dong Won Kim, Sang‐Soo Lee, Mehmet F. Keleş, Qili Liu +11 more

Transition to Chronic Fibrosis in an Animal Model of Retinal Detachment With Features of Proliferative Vitreoretinopathy

Investigative Ophthalmology & Visual Science(2023)10.1167/iovs.64.15.39

N/A

0DataRank · unranked

4 citations

Yuchen Lu, Clayton P. Santiago, Antoinette Price, Minda M. McNally, William Schubert +6 more

Cell fate specification and conversion generate foveolar cone subtype patterning in human retinal organoids

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.28.526051

N/A

0DataRank · unranked

4 citations

Kiara C. Eldred, Brian Guy, Clayton P. Santiago, Ian A. Glass, Thomas A. Reh +4 more

Molecular regulation of retinal regeneration is context specific

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.20.567904

N/A

0DataRank · unranked

3 citations

John Hageter, Thanh Hoang, Pin Lyu, Abigail V. Sharrock, Anneliese Ceisel +20 more

Identification of conserved gene expression programs activated in multiple modes of torpor across vertebrate clades

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.29.569284

N/A

0DataRank · unranked

0 citations

Natasha Vega, Veronica F. Busa, Ben Sajdak, Les Kallestad, Dana K. Merriman +4 more

Elevated nuclear TDP-43 induces constitutive exon skipping

Molecular Neurodegeneration(2024)10.1186/s13024-024-00732-w

N/A

0DataRank · unranked

23 citations

William Tsao, Yingzhi Ye, Irika R. Sinha, Koping Chang, Vickie Trinh +9 more

A large-scale CRISPR screen reveals context-specific genetic regulation of retinal ganglion cell regeneration

Development(2024)10.1242/dev.202754

N/A

0DataRank · unranked

12 citations

John Hageter, Thanh Hoang, Pin Lyu, Abigail V. Sharrock, Anneliese Ceisel +20 more

Intercellular communication atlas reveals Oprm1 as a neuroprotective factor for retinal ganglion cells

Nature Communications(2024)10.1038/s41467-024-46428-z

N/A

0DataRank · unranked

16 citations

Ying Xin, Cheng Qi, H. M. Wang, Bryan C. Dong, Donald J. Zack +5 more

An amygdalar oscillator coordinates cellular and behavioral rhythms

Neuron(2024)10.1016/j.neuron.2024.08.013

N/A

0DataRank · unranked

10 citations

Jiali Xiong, Dong Won Kim, Sang‐Soo Lee, Benjamin J. Bell, Chloe Alexandre +4 more

Control of tuberal hypothalamic development and its implications in metabolic disorders

Nature Reviews Endocrinology(2024)10.1038/s41574-024-01036-1

N/A

0DataRank · unranked

10 citations

Kavitha Chinnaiya, Dong Won Kim, Seth Blackshaw, Marysia Placzek

Transcriptomic profiling of thyroid eye disease orbital fat demonstrates differences in adipogenicity and IGF-1R pathway

JCI Insight(2024)10.1172/jci.insight.182352

N/A

0DataRank · unranked

9 citations

Soo-Hyun Kim, Jeong Han, Karan Belday, Emily Li, Nicholas R. Mahoney +3 more

Identification of shared gene expression programs activated in multiple modes of torpor across vertebrate clades

Scientific Reports(2024)10.1038/s41598-024-74324-5

N/A

0DataRank · unranked

2 citations

Natasha Vega, Veronica F. Busa, Ben Sajdak, Les Kallestad, Dana K. Merriman +4 more

An Amygdalar Oscillator Coordinates Cellular and Behavioral Rhythms

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.08.584151

N/A

0DataRank · unranked

0 citations

Jiali Xiong, Dong Won Kim, Sang‐Soo Lee, Benjamin J. Bell, C Alexandre +4 more

Sleep need–dependent plasticity of a thalamic circuit promotes homeostatic recovery sleep

Science(2025)10.1126/science.adm8203

N/A

0DataRank · unranked

26 citations

Qiang Liu, Alexandra Cheng, Dong Won Kim, Daphne M. Boudreau, Anuradha Mehta +10 more

Decoding gene networks controlling hypothalamic and prethalamic neuron development

Cell Reports(2025)10.1016/j.celrep.2025.115858

N/A

0DataRank · unranked

21 citations

Leighton H. Duncan, Zheng Xu, Minzi Chang, Sara Sejer, Chantelle E. Terrillion +4 more

Timing neural development and regeneration

Current Opinion in Neurobiology(2025)10.1016/j.conb.2025.102976

N/A

0DataRank · unranked

9 citations

Michel Cayouette, Seth Blackshaw

MFRP is a molecular hub that organizes the apical membrane of RPE cells by engaging in interactions with specific proteins and lipids

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2425523122

N/A

0DataRank · unranked

4 citations

Roman Šmidák, Carolline Rodrigues Menezes, Samuel W. Du, Susie Suh, Elliot H. Choi +12 more

Decoding Gene Networks Controlling Hypothalamic and Prethalamic Neuron Development

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.10.632449

N/A

0DataRank · unranked

1 citations

Leighton H. Duncan, Jinchao Xu, Minzi Chang, Sara Sejer Sørensen, Chantelle E. Terrillion +4 more

Resolving forebrain developmental organisation by analysis of differential growth patterns

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.10.632351

N/A

0DataRank · unranked

0 citations

Kavitha Chinnaiya, Caitlyn Furley, Dong Won Kim, Seth Blackshaw, Marysia Placzek +2 more

The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development

Nature Communications(2020)10.1038/s41467-020-18231-z

N/A

0DataRank · unranked

208 citations

Parris Whitney Washington, Zoe Qianyi Wang, Sonia Hao Lin, Changyu Sun, Basma Taleb Ismail +4 more

Profiling the TRPV4 ankyrin repeat domain interactome and its disruption by neuromuscular disease-causing mutations

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110991

N/A

0DataRank · unranked

0 citations

Gage P Kosmanopoulos, William H. Aisenberg, Eric Cox, Alexis R. Meeker, Seth Blackshaw +6 more