Gamze Gürsoy

Also affiliated with Columbia University

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

11.9Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Papers

Driven by 32 papers — median percentile 95. Top paper: “Expanded encyclopaedias of DNA elements in the human and mouse genomes”.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

An integrative ENCODE resource for cancer genomics

Nature Communications(2020)10.1038/s41467-020-14743-w

Top 5%

4.1DataRank

Top 5%190 citations

Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray +53 more

Private information leakage from single-cell count matrices

Cell(2024)10.1016/j.cell.2024.09.012

N/A

2.2DataRank · unranked

29 citations

Xiaoting Li, Manav Chakravarthy, William Lounsbery-Scaife, Yoolim A. Choi, Ritambhara Singh +2 more

Predicting gene expression in massively parallel reporter assays: A comparative study

Human Mutation(2017)10.1002/humu.23197

N/A

1.7DataRank · unranked

52 citations

Haoyang Zeng, Matthew D. Edwards, Gamze Gürsoy, Kevin Tian, R. Alan Harris +20 more

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Cell(2023)10.1016/j.cell.2023.02.018

Top 15%

1.4DataRank

Top 15%82 citations

Jiahao Gao, Beatrice Borsari, Yucheng T. Yang, Timur R. Galeev, Gamze Gürsoy +95 more

A framework for sharing of clinical and genetic data for precision medicine applications

Nature Medicine(2024)10.1038/s41591-024-03239-5

N/A

0.857DataRank · unranked

32 citations

Ulugbek K. Baymuradov, Hemali Phatnani, Justin Kwan, Dhruv Sareen, James R. Broach +63 more

Omics Approaches to Investigate the Pathogenesis of Suicide

Biological Psychiatry(2024)10.1016/j.biopsych.2024.05.017

N/A

0.473DataRank · unranked

10 citations

Yang Xiao, Tarjinder Singh, Chenxu Zhu, Mbemba Jabbi, Harry Pantazopoulos +16 more

FANCY: fast estimation of privacy risk in functional genomics data

Bioinformatics(2020)10.1093/bioinformatics/btaa661

N/A

0.342DataRank · unranked

5 citations

Charlotte M. Brannon, Fábio C. P. Navarro, Mark Gerstein, Gamze Gürsoy

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

Genome Research(2023)10.1101/gr.278322.123

N/A

0.239DataRank · unranked

3 citations

Maya N. Geradi, Gamze Gürsoy, Monica R. Grasty, Andrew D. Miranker, Mark Gerstein +1 more

Recent advances and future prospects for blockchain in biomedicine

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101114

N/A

0.165DataRank · unranked

2 citations

Xiangru Tang, Xiao Zhou, Danielle Lee, Ahmed El‐Hussein, Elizabeth Knight +3 more

Genome Privacy and Trust

Annual Review of Biomedical Data Science(2022)10.1146/annurev-biodatasci-122120-021311

N/A

0DataRank · unranked

11 citations

Gamze Gürsoy

Predicting A/B compartments from histone modifications using deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.19.488754

N/A

0DataRank · unranked

12 citations

Nitya Thakkar, Hannah L. Harris, Megan Zhang, Susanna Liu, Mark Gerstein +6 more

A genome-wide atlas of recurrent repeat expansions in human cancer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.24.505159

N/A

0DataRank · unranked

1 citations

Gamze Gürsoy, Rashid Al-Abri, Ashwini Suriyaprakash, Egor Dolzhenko, Kevin Zhu +19 more

Session Introduction: TOWARDS ETHICAL BIOMEDICAL INFORMATICS: LEARNING FROM OLELO NOEAU, HAWAIIAN PROVERBS

PubMed(2022)10.1142/9789811270611_0042

N/A

0DataRank · unranked

1 citations

Noelani Puniwai, Martina Kamaka, Gamze Gürsoy, Nicholas P. Tatonetti, Steven E. Brenner +2 more

Predicting A/B compartments from histone modifications using deep learning

iScience(2024)10.1016/j.isci.2024.109570

N/A

0DataRank · unranked

12 citations

Nitya Thakkar, Hannah L. Harris, Susanna Liu, Megan Zhang, Mark Gerstein +6 more

Privacy-preserving model evaluation for logistic and linear regression using homomorphically encrypted genotype data

Journal of Biomedical Informatics(2024)10.1016/j.jbi.2024.104678

N/A

0DataRank · unranked

10 citations

Yoolim A. Choi, Daniel S. Joo, Gamze Gürsoy, Seungwan Hong

Examining the Generalizability of Pretrained De-identification Transformer Models on Narrative Nursing Notes

Applied Clinical Informatics(2024)10.1055/a-2282-4340

N/A

0DataRank · unranked

8 citations

Syed Mohtashim Abbas Bokhari, Kenrick Cato, Gamze Gürsoy, Sarah Collins Rossetti, Fangyi Chen

SQUiD: ultra-secure storage and analysis of genetic data for the advancement of precision medicine

Genome biology(2024)10.1186/s13059-024-03447-9

N/A

0DataRank · unranked

4 citations

Jiayi Kang, Seungwan Hong, Caline S. Karam, Thomas Lehner, Gamze Gürsoy +1 more

Multi-domain rule-based phenotyping algorithms enable improved GWAS signal

npj Digital Medicine(2025)10.1038/s41746-025-01815-8

N/A

0DataRank · unranked

5 citations

Ahmed El‐Hussein, Gamze Gürsoy, Abigail Newbury

Secure and federated quantitative trait loci mapping with privateQTL

Cell Genomics(2025)10.1016/j.xgen.2025.100769

N/A

0DataRank · unranked

2 citations

Yebin Kim, Peihan Miao, Tuuli Lappalainen, Gamze Gürsoy, Yoolim A. Choi

Estimating the size of long tandem repeat expansions from short reads with ScatTR

Genome Research(2025)10.1101/gr.280563.125

N/A

0DataRank · unranked

1 citations

Gamze Gürsoy, Rashid Al-Abri

African Green Monkeys Respond to Synthetic Aβ Oligomers with Persistent Alzheimer’s-like Activation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.08.678256

N/A

0DataRank · unranked

0 citations

Xiaoting Li, Monica R. Grasty, Isabel Álvarez, Sara Dzigurski, Maya N. Geradi +6 more

A Universal Metric of Dataset Similarity for Cross-Silo Federated Learning

PubMed(2025)10.1109/icdm65498.2025.00031

N/A

0DataRank · unranked

0 citations

Gamze Gürsoy, Ahmed Elhussein

Using Ethereum blockchain to store and query pharmacogenomics data via smart contracts

BMC Medical Genomics(2020)10.1186/s12920-020-00732-x

N/A

0DataRank · unranked

57 citations

Charlotte M. Brannon, Mark Gerstein, Gamze Gürsoy

DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring

BMC Bioinformatics(2020)10.1186/s12859-020-03605-3

N/A

0DataRank · unranked

8 citations

Jason Liu, Donghoon Lee, Shaoke Lou, Zhanlin Chen, Gamze Gürsoy +2 more

Using blockchain to log genome dataset access: efficient storage and query

BMC Medical Genomics(2020)10.1186/s12920-020-0716-z

N/A

0DataRank · unranked

33 citations

Robert Bjornson, Molly E. Green, Mark Gerstein, Gamze Gürsoy

Privacy-preserving genotype imputation with fully homomorphic encryption

Cell Systems(2021)10.1016/j.cels.2021.10.003

N/A

0DataRank · unranked

44 citations

Eduardo Chielle, Charlotte M. Brannon, Michail Maniatakos, Mark Gerstein, Gamze Gürsoy

Establishing a Global Standard for Wearable Devices in Sport and Exercise Medicine: Perspectives from Academic and Industry Stakeholders

Sports Medicine(2021)10.1007/s40279-021-01543-5

N/A

0DataRank · unranked

33 citations

Matthew Stults‐Kolehmainen, Michael A. Busa, Allison E. Gaffey, Konstantinos Angeloudis, Borja Muñiz-Pardos +43 more

Fast and Scalable Private Genotype Imputation Using Machine Learning and Partially Homomorphic Encryption

IEEE Access(2021)10.1109/access.2021.3093005

N/A

0DataRank · unranked

46 citations

Eduardo Chielle, Gamze Gürsoy, Oleg Mazonka, Mark Gerstein, Michail Maniatakos +1 more

Recovering genotypes and phenotypes using allele-specific genes

Genome biology(2021)10.1186/s13059-021-02477-x

N/A

0DataRank · unranked

14 citations

Nancy Lu, Sarah Wagner, Mark Gerstein, Gamze Gürsoy

Recurrent repeat expansions in human cancer genomes

Nature(2022)10.1038/s41586-022-05515-1

N/A

0DataRank · unranked

89 citations

Gamze Gürsoy, Rashid Al-Abri, Ashwini Suriyaprakash, Egor Dolzhenko, Kevin Zhu +19 more

Storing and analyzing a genome on a blockchain

Genome biology(2022)10.1186/s13059-022-02699-7

N/A

0DataRank · unranked

39 citations

Charlotte M. Brannon, Eric Ni, Sarah Wagner, Amol Khanna, Mark Gerstein +1 more

Gamze Gürsoy

Indexed papers

Top data-sharing exemplar

Papers