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Estimating the size of long tandem repeat expansions from short reads with ScatTR

Genome Research(2025)10.1101/gr.280563.125Source: DataRank Database

Estimating the size of long tandem repeat expansions from short reads with ScatTR is a research paper published in Genome Research (2025). On theSindex it has a DataRank of 0. It has been cited 1 time.

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Enrichment:Funding (4 grants)OA: bronzeTopics (48)IDs (PubMed, PMC, OpenAlex)Annotations (1)

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Authors (2)

Gamze Gürsoy ORCID,Rashid Al-Abri ORCID

Live enrichment

PubMed:40841169 PMC:PMC12667716 OpenAlex:https://openalex.org/W4413389891

National Institutes of Health

Grant: R03OD036491

National Institute of General Medical Sciences

Grant: R35GM147004

National Institutes of Health

Grant: 1R03OD036491-01

Delineating the functional impact of recurrent repeat expansions in ALS using integrative multiomic analysis

National Institutes of Health

Grant: 5R35GM147004-02

Tools to Address the Challenges of Preserving Privacy in Sharing and Analysis of Biomedical Data

bronzeLicense: CC BY NC

journalhttp://genome.cshlp.org/content/early/2025/08/21/gr.280563.125.full.pdf

publisherhttp://genome.cshlp.org/content/early/2025/08/21/gr.280563.125.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/gr.280563.125

journalhttps://doi.org/10.1101/gr.280563.125

repositoryhttps://pubmed.ncbi.nlm.nih.gov/40841169

Fields of Study

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsGenetic diversity and population structure0206 medical engineering02 engineering and technologyHumansSequence Analysis, DNATandem Repeat SequencesMonte Carlo MethodHigh-Throughput Nucleotide SequencingAlgorithmsGenome, HumanLikelihood FunctionsDNA Repeat Expansion

MeSH Terms

AlgorithmsHumansMonte Carlo MethodGenome, HumanLikelihood FunctionsSequence Analysis, DNATandem Repeat SequencesDNA Repeat ExpansionHigh-Throughput Nucleotide Sequencing

Keywords

BiologyGenomeTandem repeatHybrid genome assemblyComputational biologyDNA sequencingRange (aeronautics)Reference genomeHuman genomeFragment (logic)GeneticsAlgorithmComputer scienceDNAGeneLikelihood FunctionsDNA Repeat ExpansionTandem Repeat SequencesGenome, HumanMethodHumansHigh-Throughput Nucleotide SequencingSequence Analysis, DNAMonte Carlo MethodAlgorithms