Jason Greenbaum

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

30.4Author DataRank

Indexed papers

7in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 44 papers — median percentile 91. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Immune epitope database analysis resource

Nucleic Acids Research(2012)10.1093/nar/gks438

Top 2%

7.3DataRank

Top 2%521 citations

Z. Zhu, D. Tamang, P. Wang, C. Lundegaard, B. Peters +12 more

Immune epitope database analysis resource (IEDB-AR)

Nucleic Acids Research(2008)10.1093/nar/gkn254

Top 3%

6.5DataRank

Top 3%402 citations

P. Wang, Y. Kim, P. Haste-Andersen, John E Beaver, Huynh-Hoa Bui +20 more

The Immune Epitope Database (IEDB): 2024 update

Nucleic Acids Research(2024)10.1093/nar/gkae1092

Top 9%

2.5DataRank

Top 9%215 citations

Nina Blazeska, Daniel Marrama, IEDB Curation Team Members, Deborah A. Shackelford, L S Zalman +23 more

Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals

Cell(2020)10.1016/j.cell.2020.05.015

N/A

1.2DataRank · unranked

4014 citations

Daniela Weiskopf, Sydney I. Ramirez, José Mateus, Jennifer M. Dan, Carolyn Rydyznski Moderbacher +15 more

Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity

Cell(2020)10.1016/j.cell.2020.09.038

N/A

1.1DataRank · unranked

1960 citations

Sydney I. Ramirez, Jennifer M. Dan, Alba Grifoni, Kathryn M. Hastie, Daniela Weiskopf +19 more

Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans

Science(2020)10.1126/science.abd3871

N/A

1.1DataRank · unranked

1276 citations

Alba Grifoni, Alison Tarke, John Sidney, Sydney I. Ramirez, Jennifer M. Dan +21 more

IEDB‐3D 2.0: Structural data analysis within the Immune Epitope Database

Protein Science(2023)10.1002/pro.4605

Top 21%

0.977DataRank

Top 21%34 citations

Jarjapu Mahita, Nina Blazeska, Jason Greenbaum, Brendan Ha, Kelly Wheeler +5 more

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100204

N/A

0.954DataRank · unranked

579 citations

John Sidney, Conner K. Kidd, Jennifer M. Dan, Sydney I. Ramirez, Esther Dawen Yu +17 more

Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction

Cell(2020)10.1016/j.cell.2020.09.015

N/A

0.945DataRank · unranked

543 citations

Marit M. van Buuren, Kristen K. Dang, Vanessa M. Hubbard-Lucey, Kathleen C. F. Sheehan, Katie M. Campbell +95 more

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.08.416750

N/A

0.673DataRank · unranked

88 citations

John Sidney, Conner K. Kidd, Jennifer M. Dan, Sydney I. Ramirez, Esther Dawen Yu +17 more

Tumor cells fail to present MHC-II–restricted epitopes derived from oncogenes to CD4+ T cells

JCI Insight(2022)10.1172/jci.insight.165570

N/A

0.416DataRank · unranked

15 citations

Martin S. Naradikian, Rukman R. Thota, Angelica Becker, Leslie Montero, Milad Bahmanof +7 more

TLR9 Sensing of Self-DNA Controls Cell-Mediated Immunity to Listeria Infection via Rapid Conversion of Conventional CD4+ T Cells to Treg

Cell Reports(2020)10.1016/j.celrep.2020.01.040

N/A

0.406DataRank · unranked

14 citations

Joey Lee, Ryan Q. Griswold, Lara Labarta-Bajo, Sumetha Kannan, Jason Greenbaum +5 more

Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates

Nature Precedings(2009)10.1038/npre.2009.3970.1

N/A

0.373DataRank · unranked

11 citations

Jason Greenbaum, Melanie Courtot, Nigam Shah, Daniel Schober, Richard Scheuerman +7 more

Transcriptomes and metabolism define mouse and human MAIT cell heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.20.473182

N/A

0.312DataRank · unranked

7 citations

Gabriel Ascui, Thomas Riffelmacher, Ashu Chawla, Ciro Ramírez-Suástegui, Viankail Cedillo Castelan +19 more

A multi-omics systems vaccinology resource to develop and test computational models of immunity

Cell Reports Methods(2024)10.1016/j.crmeth.2024.100731

Top 57%

0.280DataRank

Top 57%5 citations

Ferran Soldevila, Joaquin Reyna, Minori Aoki, Mikkel Mylius Rasmussen, Lisa Willemsen +18 more

Transcriptome and Chromatin Landscape of iNKT cells are Shaped by Subset Differentiation and Antigen Exposure

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.27.357673

N/A

0.217DataRank · unranked

3 citations

Isaac Engel, Grégory Seumois, Sara Herrera de la Mata, Sandy Lucette Rosales, Ashu Sethi +7 more

Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates

Nature Precedings(2009)10.1038/npre.2009.3970

N/A

0.208DataRank · unranked

3 citations

Bjoern Peters, Jason Greenbaum, Melanie Courtot, Nigam Shah, Daniel Schober +7 more

Linked CD4 + /CD8 + T cell neoantigen vaccination overcomes immune checkpoint blockade resistance and enables tumor regression

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.06.539290

N/A

0.165DataRank · unranked

2 citations

Joey Lee, Spencer E. Brightman, Sara McArdle, Samantha M. Hall, Rukman R. Thota +7 more

Putting computational models of immunity to the test—An invited challenge to predict B.pertussis vaccination responses

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012927

N/A

0DataRank · unranked

1 citations

Lisa Willemsen, Michael C. Anderson, Minori Aoki, Saonli Basu, Julie G. Burel +54 more

Peptide-driven identification of TCRs reveals dynamics and phenotypes of CD4 T cells in tuberculosis

The Journal of Immunology(2025)10.1093/jimmun/vkaf287

N/A

0DataRank · unranked

1 citations

Raphael Trevizani, Leila Y. Chihab, Ashu Chawla, Kai Fung, Jason Greenbaum +12 more

Peptide Driven Identification of TCRs (PDI-TCR) reveals dynamics and phenotypes of CD4 T cells in tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.06.652535

N/A

0DataRank · unranked

1 citations

Raphael Trevizani, Leila Y. Chihab, Ashu Chawla, Kai Fung, Jason Greenbaum +12 more

Characterizing antibodies binding to the same epitope reveals limited contribution by heavy chain CDR3 sequences relative to other CDRs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.24.655967

N/A

0DataRank · unranked

1 citations

Haeuk Kim, Marcus Fabiano de Almeida Mendes, Eve Richardson, Jason Greenbaum, Alessandro Sette +3 more

Cancer Epitope Prediction Tools & Analysis Pipelines in CEDAR

Preprints.org(2025)10.20944/preprints202510.0273.v1

N/A

0DataRank · unranked

0 citations

Jason Greenbaum, Zhen Yan, Kevin Kim, Haeuk Kim, Ashmitaa Logandha Ramamoorthy Premlal +8 more

Enrichment of a CD4 - CD8 - NK-like cytotoxic Vδ1/3 T cell subset in tuberculosis disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.12.688134

N/A

0DataRank · unranked

0 citations

Rashmi Tippalagama, Ashu Chawla, Jason Greenbaum, Aruna Dharshan De Silva, Wathsala Gunasinghe +8 more

Symptomatic SARS-CoV-2 breakthrough infections broaden the repertoire of Spike-reactive CD4 T cells

mBio(2025)10.1128/mbio.03549-25

N/A

0DataRank · unranked

0 citations

Yeji Lee, Vicente Fajardo-Rosas, Adam Abawi, Ashmitaa Logandha Ramamoorthy Premlal, April Frazier +5 more

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

UNC Libraries(2020)10.17615/d7n3-p041

Top 100%

0DataRank

Top 100%0 citations

Christopher M. Taylor, Saurabh Asthana, J Stamatoyannopoulos, Michael P. Snyder, Ewan Birney +26 more

Transcriptome and chromatin landscape of iNKT cells are shaped by subset differentiation and antigen exposure

Nature Communications(2021)10.1038/s41467-021-21574-w

N/A

0DataRank · unranked

42 citations

Isaac Engel, Grégory Seumois, Sara Herrera de la Mata, Sandy Lucette Rosales, Ashu Sethi +7 more

Transcriptomics of acute DENV-specific CD8+ T cells does not support qualitative differences as drivers of disease severity

medRxiv(2021)10.1101/2021.09.01.21262833

N/A

0DataRank · unranked

1 citations

Hannah Voic, José Mateus, Kai Mei Yan Fung, Alice Wang, Grégory Seumois +13 more

Single-cell eQTL analysis of activated T cell subsets reveals activation and cell type–dependent effects of disease-risk variants

Science Immunology(2022)10.1126/sciimmunol.abm2508

N/A

0DataRank · unranked

104 citations

Cristian González-Colín, Vicente Fajardo, Job Rocha, Ariel Madrigal, Ciro Ramírez-Suástegui +9 more

Combined assessment of MHC binding and antigen abundance improves T cell epitope predictions

iScience(2022)10.1016/j.isci.2022.103850

N/A

0DataRank · unranked

33 citations

Jenny Lee, Jason Greenbaum, Stephen P. Schoenberger, Aaron M. Miller, Young J. Kim +4 more

Predicting the Success of Fmoc-Based Peptide Synthesis

ACS Omega(2022)10.1021/acsomega.2c02425

N/A

0DataRank · unranked

21 citations

Ron Gutman, John Sidney, Leila Y. Chihab, Michele Mishto, Juliane Liepe +7 more

Transcriptomics of Acute DENV-Specific CD8+ T Cells Does Not Support Qualitative Differences as Drivers of Disease Severity

Vaccines(2022)10.3390/vaccines10040612

N/A

0DataRank · unranked

13 citations

Hannah Voic, Esther Dawen Yu, José Mateus, Kai Fung, Alice Wang +14 more

Developmentally distinct CD4 + T reg lineages shape the CD8 + T cell response to acute Listeria infection

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2113329119

N/A

0DataRank · unranked

14 citations

Joey Lee, Eugene Moore, Jennifer L. Hope, Donald T. Gracias, Takaji Matsutani +5 more

Linked CD4+/CD8+ T cell neoantigen vaccination overcomes immune checkpoint blockade resistance and enables tumor regression

Journal of Clinical Investigation(2023)10.1172/jci164258

N/A

0DataRank · unranked

67 citations

Joey Lee, Spencer E. Brightman, Sara McArdle, Samantha Hall, Rukman R. Thota +8 more

Transcriptomes and metabolism define mouse and human MAIT cell populations

Science Immunology(2023)10.1126/sciimmunol.abn8531

N/A

0DataRank · unranked

48 citations

Gabriel Ascui, Thomas Riffelmacher, Ashu Chawla, Ciro Ramírez-Suástegui, Viankail Cedillo Castelan +20 more

PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins

BMC Bioinformatics(2023)10.1186/s12859-023-05606-4

N/A

0DataRank · unranked

19 citations

William D. Chronister, Luise Westernberg, Randi Vita, Zeynep Koşaloğlu, Alessandro Sette +4 more

Estimating tissue-specific peptide abundance from public RNA-Seq data

Frontiers in Genetics(2023)10.3389/fgene.2023.1082168

N/A

0DataRank · unranked

6 citations

Jason Greenbaum, Haeuk Kim, Bjoern Peters, Zeynep Koşaloğlu, Angela Frentzen

A systems vaccinology resource to develop and test computational models of immunity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.28.555193

N/A

0DataRank · unranked

0 citations

Ferran Soldevila, Joaquin Reyna, Minori Aoki, Mikkel Mylius Rasmussen, Lisa Willemsen +18 more

The receiver operating characteristic curve accurately assesses imbalanced datasets

Patterns(2024)10.1016/j.patter.2024.100994

N/A

0DataRank · unranked

178 citations

Raphael Trevizani, Jason Greenbaum, Hannah Carter, Morten Nielsen, Bjoern Peters +1 more

Next-generation IEDB tools: a platform for epitope prediction and analysis

Nucleic Acids Research(2024)10.1093/nar/gkae407

N/A

0DataRank · unranked

58 citations

Kevin Kim, Haeuk Kim, Brendan Ha, Anaïs Gambiez, Jason W. Bennett +12 more

Intra-tumoral T cells in pediatric brain tumors display clonal expansion and effector properties

Nature Cancer(2024)10.1038/s43018-023-00706-9

N/A

0DataRank · unranked

16 citations

Kevin E. Meza Landeros, Ciro Ramírez-Suástegui, Benjamin Joachim Schmiedel, Edwin Woo, Serena Chee +14 more

Late-rising CD4 T cells resolve mouse cytomegalovirus persistent replication in the salivary gland

PLoS Pathogens(2024)10.1371/journal.ppat.1011852

N/A

0DataRank · unranked

7 citations

Gaëlle Picarda, Ankan Gupta, Raima Ghosh, Bryan McDonald, Rachid El Morabiti +8 more

Putting computational models of immunity to the test - an invited challenge to predict B. pertussis vaccination outcomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.04.611290

N/A

0DataRank · unranked

1 citations

Lisa Willemsen, Michael C. Anderson, Minori Aoki, Saonli Basu, Julie G. Burel +54 more

Jason Greenbaum

Indexed papers

Top data-sharing exemplar

Papers