🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Mark Borodovsky

Georgia Institute of Technology

ORCID: 0000-0002-1401-4046

Also affiliated with The Wallace H. Coulter Department of Biomedical Engineering

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
9.9Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

NCBI prokaryotic genome annotation pipeline

Nucleic Acids Research(2016)10.1093/nar/gkw569
Top 2%
8.2DataRank
Top 2%7082 citations

Michael DiCuccio, Azat Badretdin, Vyacheslav Chetvernin, Eric P. Nawrocki, Leonid Zaslavsky +5 more

Papers

Driven by 21 papers — median percentile 72. Top paper: “NCBI prokaryotic genome annotation pipeline”.

NCBI prokaryotic genome annotation pipeline

Nucleic Acids Research(2016)10.1093/nar/gkw569
Top 2%
8.2DataRank
Top 2%7082 citations

Michael DiCuccio, Azat Badretdin, Vyacheslav Chetvernin, Eric P. Nawrocki, Leonid Zaslavsky +5 more

GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa026
N/A
0.956DataRank · unranked
584 citations

Alexandre Lomsadze, Mark Borodovsky, Tomáš Brůna

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

UNC Libraries(2020)10.17615/b46q-9a64
Top 25%
0.793DataRank
Top 25%22 citations

Patrik J. Hoegger, Sreedhar Kilaru, Jonathan M. Goldberg, Bruce W. Birren, James B. Hooker +27 more

A chromosome-length genome assembly and annotation of blackberry ( Rubus argutus , cv. “Hillquist”)

G3 Genes Genomes Genetics(2022)10.1093/g3journal/jkac289
Top 30%
0.674DataRank
Top 30%31 citations

Rishi Aryal, Olga Dudchenko, Daniel James Sargent, Daniel G. Mead, Matteo Buti +21 more

Translon: a single term for translated regions

Nature Methods(2025)10.1038/s41592-025-02810-3
N/A
0.389DataRank · unranked
11 citations

Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins +164 more

A chromosome-length genome assembly and annotation of blackberry ( Rubus argutus , cv. ‘Hillquist’)

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.28.489789
Top 62%
0.222DataRank
Top 62%3 citations

Rishi Aryal, Olga Dudchenko, Daniel James Sargent, Daniel G. Mead, Matteo Buti +21 more

TSEBRA: transcript selector for BRAKER

BMC Bioinformatics(2021)10.1186/s12859-021-04482-0
N/A
0DataRank · unranked
381 citations

Katharina J. Hoff, Tomáš Brůna, Mark Borodovsky, Mario Stanke, Lars Gabriel

StartLink and StartLink+: Prediction of Gene Starts in Prokaryotic Genomes

Frontiers in Bioinformatics(2021)10.3389/fbinf.2021.704157
N/A
0DataRank · unranked
2 citations

Alexandre Lomsadze, Mark Borodovsky, Karl Gemayel

TSEBRA: Transcript Selector for BRAKER

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.07.447316
N/A
0DataRank · unranked
14 citations

Katharina J. Hoff, Tomáš Brůna, Mark Borodovsky, Mario Stanke, Lars Gabriel

MetaGeneMark-2: Improved Gene Prediction in Metagenomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.25.500264
N/A
0DataRank · unranked
48 citations

Alexandre Lomsadze, Mark Borodovsky, Karl Gemayel

Annotation of Phage Genomes with Multiple Genetic Codes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.29.495998
N/A
0DataRank · unranked
4 citations

Alexandre Lomsadze, Mark Borodovsky, Aaron Pfennig

MgCod: Gene Prediction in Phage Genomes with Multiple Genetic Codes

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168159
N/A
0DataRank · unranked
12 citations

Alexandre Lomsadze, Mark Borodovsky, Aaron Pfennig

BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.10.544449
N/A
0DataRank · unranked
239 citations

Tomáš Brůna, Katharina J. Hoff, Matthis Ebel, Alexandre Lomsadze, Mark Borodovsky +2 more

A new gene finding tool GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.13.524024
N/A
0DataRank · unranked
63 citations

Alexandre Lomsadze, Mark Borodovsky, Tomáš Brůna

BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA

Genome Research(2024)10.1101/gr.278090.123
N/A
0DataRank · unranked
574 citations

Tomáš Brůna, Katharina J. Hoff, Matthis Ebel, Alexandre Lomsadze, Mark Borodovsky +2 more

GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes

Genome Research(2024)10.1101/gr.278373.123
N/A
0DataRank · unranked
142 citations

Alexandre Lomsadze, Mark Borodovsky, Tomáš Brůna

Disproportionate presence of adenosine in mitochondrial and chloroplast DNA of Chlamydomonas reinhardtii

iScience(2020)10.1016/j.isci.2020.102005
N/A
0DataRank · unranked
11 citations

Alli L. Gombolay, Penghao Xu, Taehwan Yang, Youngkyu Jeon, Sathya Balachander +10 more

BRAKER2: Automatic Eukaryotic Genome Annotation with GeneMark-EP+ and AUGUSTUS Supported by a Protein Database

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.10.245134
N/A
0DataRank · unranked
143 citations

Katharina J. Hoff, Alexandre Lomsadze, Mario Stanke, Mark Borodovsky, Tomáš Brůna

GeneMark-EP and -EP+: eukaryotic gene prediction with self-training in the space of genes and proteins

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2019.12.31.891218
N/A
0DataRank · unranked
5 citations

Alexandre Lomsadze, Mark Borodovsky, Tomáš Brůna

StartLink+: Prediction of Gene Starts in Prokaryotic Genomes by an Algorithm Integrating Independent Sources of Evidence

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.25.352625
N/A
0DataRank · unranked
0 citations

Alexandre Lomsadze, Mark Borodovsky, Karl Gemayel

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqaa108
N/A
0DataRank · unranked
1827 citations

Katharina J. Hoff, Alexandre Lomsadze, Mario Stanke, Mark Borodovsky, Tomáš Brůna