Rahul Satija

Also affiliated with New York University

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.3Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A roadmap for the Human Developmental Cell Atlas

Nature(2021)10.1038/s41586-021-03620-1

Top 6%

3.9DataRank

Top 6%194 citations

Deanne Taylor, Sten Linnarsson, Bruce J. Aronow, Samirkumar B. Amin, Roger A. Barker +53 more

Papers

Driven by 51 papers — median percentile 77. Top paper: “Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA”.

Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

Cell(2014)10.1016/j.cell.2014.08.028

N/A

12.5DataRank · unranked

1026 citations

Douglas A. Bernstein, Maxwell R. Mumbach, Marko Jovanovic, Rebecca H. Herbst, Brian X. León-Ricardo +7 more

Toward a Common Coordinate Framework for the Human Body

Cell(2019)10.1016/j.cell.2019.11.019

N/A

5.1DataRank · unranked

134 citations

Tim Stuart, Shila Ghazanfar, Tommaso Biancalani, Eyal Fisher, Andrew Butler +8 more

A roadmap for the Human Developmental Cell Atlas

Nature(2021)10.1038/s41586-021-03620-1

Top 6%

3.9DataRank

Top 6%194 citations

Deanne Taylor, Sten Linnarsson, Bruce J. Aronow, Samirkumar B. Amin, Roger A. Barker +53 more

NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health

Nature Aging(2022)10.1038/s43587-022-00326-5

N/A

2.1DataRank · unranked

128 citations

Patty J. Lee, Christopher C. Benz, Philip D. Blood, Katy Börner, Judith Campisi +93 more

The future of rapid and automated single-cell data analysis using reference mapping

Cell(2024)10.1016/j.cell.2024.03.009

N/A

1.7DataRank · unranked

71 citations

Yuhan Hao, Fabian Joachim Theis, Rahul Satija, Mohammad Lotfollahi

Landscape of X chromosome inactivation across human tissues

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/073957

N/A

1.6DataRank · unranked

52 citations

Angela Yen, Manuel A. Rivas, Jamie L. Marshall, Rahul Satija, Laura Gauthier +17 more

Comprehensive Integration of Single-Cell Data

Cell(2019)10.1016/j.cell.2019.05.031

N/A

1.5DataRank · unranked

16515 citations

Andrew Butler, Pejman Mohammadi, Christoph Hafemeister, Efthymia Papalexi, William M. Mauck +5 more

Integrated analysis of multimodal single-cell data

Cell(2021)10.1016/j.cell.2021.04.048

N/A

1.4DataRank · unranked

15542 citations

Stephanie Hao, Erica Andersen-Nissen, William M. Mauck, Shiwei Zheng, Andrew Butler +23 more

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Nature Biotechnology(2018)10.1038/nbt.4096

N/A

1.4DataRank · unranked

14465 citations

Pejman Mohammadi, Peter Smibert, Efthymia Papalexi, Rahul Satija, Andrew Butler

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Cell(2015)10.1016/j.cell.2015.05.002

N/A

1.3DataRank · unranked

7753 citations

Anindita Basu, Rahul Satija, Taras K. Oleksyk, Karthik Shekhar, Melissa Goldman +12 more

Spatial reconstruction of single-cell gene expression data

Nature Biotechnology(2015)10.1038/nbt.3192

N/A

1.3DataRank · unranked

7529 citations

Jeffrey A. Farrell, David Gennert, Alexander F. Schier, Prisca Liberali, Rahul Satija

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

Science(2017)10.1126/science.aah4573

N/A

1.2DataRank · unranked

2459 citations

Rahul Satija, Gary Reynolds, Siranush Sarkizova, Karthik Shekhar, James Fletcher +19 more

A panoramic view of cell population dynamics in mammalian aging

Science(2024)10.1126/science.adn3949

Top 18%

1.2DataRank

Top 18%85 citations

Chloe Schaefer, Weirong Jiang, Ziyu Lu, Jasper Lee, Andras Sziraki +9 more

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

Nature(2013)10.1038/nature12172

N/A

1.1DataRank · unranked

1301 citations

Rahul Satija, Xian Adiconis, Rona S. Gertner, Jellert T. Gaublomme, Raktima Raychowdhury +14 more

Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites

Cell Reports(2014)10.1016/j.celrep.2014.05.048

N/A

1.1DataRank · unranked

1246 citations

Maxwell R. Mumbach, Marko Jovanovic, Timothy Wang, Karolina Maciag, G. Guy Bushkin +16 more

High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis

Cell(2013)10.1016/j.cell.2013.10.047

N/A

0.971DataRank · unranked

647 citations

Sudeep D. Agarwala, Maxwell R. Mumbach, Marko Jovanovic, Philipp Mertins, Alexander A. Shishkin +10 more

Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

Cell(2015)10.1016/j.cell.2015.11.009

N/A

0.960DataRank · unranked

601 citations

Nir Yosef, Youjin Lee, Rona S. Gertner, Li V. Yang, Chuan Wu +9 more

Comparative analysis of RNA sequencing methods for degraded or low-input samples

Nature Methods(2013)10.1038/nmeth.2483

N/A

0.946DataRank · unranked

549 citations

Diego Borges-Rivera, Rahul Satija, David S. DeLuca, Michele A. Busby, Aaron M. Berlin +11 more

Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells

Nature Biotechnology(2021)10.1038/s41587-021-00927-2

N/A

0.944DataRank · unranked

541 citations

Caleb A. Lareau, Kelvin Y. Chen, Andre L. Zorzetto-Fernandes, Yuhan Hao, Yusuke Takeshima +16 more

Dynamic profiling of the protein life cycle in response to pathogens

Science(2015)10.1126/science.1259038

N/A

0.926DataRank · unranked

478 citations

Michael S. Rooney, Philipp Mertins, Dariusz Przybylski, Nicolas Chevrier, Rahul Satija +15 more

A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks

Cell(2015)10.1016/j.cell.2015.06.059

N/A

0.918DataRank · unranked

455 citations

Marko Jovanovic, Rebecca H. Herbst, Atray Dixit, Chun Jimmie Ye, Dariusz Przybylski +13 more

Erratum: Corrigendum: Landscape of X chromosome inactivation across human tissues

Nature(2018)10.1038/nature25993

N/A

0.905DataRank · unranked

15 citations

Angela Yen, Manuel A. Rivas, Jamie L. Marshall, Rahul Satija, Laura Gauthier +17 more

Deconstructing transcriptional heterogeneity in pluripotent stem cells

Nature(2014)10.1038/nature13920

N/A

0.893DataRank · unranked

384 citations

Patrick Cahan, Alex K. Shalek, Rahul Satija, A. Jay DaleyKeyser, Hu Li +11 more

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

Cell(2015)10.1016/j.cell.2015.08.027

N/A

0.878DataRank · unranked

347 citations

Nathan Haseley, Douglas Brown, Cristina Penaranda, John J. Trombetta, Rahul Satija +7 more

Preparation of Single‐Cell RNA‐Seq Libraries for Next Generation Sequencing

Current Protocols in Molecular Biology(2014)10.1002/0471142727.mb0422s107

N/A

0.863DataRank · unranked

315 citations

David Gennert, Diana Lu, Rahul Satija, Alex K. Shalek, Prisca Liberali +1 more

A Generic and Cell-Type-Specific Wound Response Precedes Regeneration in Planarians

Developmental Cell(2015)10.1016/j.devcel.2015.11.004

N/A

0.823DataRank · unranked

240 citations

Lauren E. Cote, Amber Poirier, Rahul Satija, Prisca Liberali, Peter W. Reddien +1 more

Author response: The Human Cell Atlas

(2017)10.7554/elife.27041.011

Top 29%

0.700DataRank

Top 29%14 citations

Sarah A. Teichmann, Matthew E. Hurles, Ido Amit, Kerstin Lindblad‐Toh, Bernd Bodenmiller +60 more

The Somatic Mosaicism across Human Tissues Network

Nature(2025)10.1038/s41586-025-09096-7

N/A

0.672DataRank · unranked

43 citations

Ji Won Oh, Yujin Angelina Choi, Nam Seop Lim, Boxun Zhao, Adam Voshall +365 more

Longitudinal patterns and predictors of response to standard-of-care therapy in lupus nephritis: data from the Accelerating Medicines Partnership Lupus Network

Arthritis Research & Therapy(2024)10.1186/s13075-024-03275-z

Top 34%

0.578DataRank

Top 34%25 citations

Mimi Kim, Philip M. Carlucci, Katherine Preisinger, Brooke Cohen, Kristina Deonaraine +90 more

Systematic reconstruction of molecular pathway signatures using scalable single-cell perturbation screens

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.29.576933

N/A

0.470DataRank · unranked

22 citations

Rahul Satija, Efthymia Papalexi, Isabella Mascio, Hans‐Hermann Wessels, Huiyoung Yun +5 more

Extrarenal symptoms associate with worse quality of life in patients enrolled in the AMP RA/SLE Lupus Nephritis Network

Lara D. Veeken(2024)10.1093/rheumatology/keae189

N/A

0.312DataRank · unranked

7 citations

Katherine Preisinger, Kristina Deonaraine, Devyn Zaminski, Maria Dall’Era, Heather T. Gold +88 more

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

Cell(2015)10.1016/j.cell.2015.09.044

N/A

0.241DataRank · unranked

4 citations

Nathan Haseley, Douglas Brown, Cristina Penaranda, John J. Trombetta, Rahul Satija +8 more

Erratum: Corrigendum: Comparative analysis of RNA sequencing methods for degraded or low-input samples

Nature Methods(2014)10.1038/nmeth0214-210e

N/A

0.212DataRank · unranked

2 citations

Diego Borges-Rivera, Rahul Satija, David S. DeLuca, Michele A. Busby, Aaron M. Berlin +11 more

CPA-Perturb-seq: Multiplexed single-cell characterization of alternative polyadenylation regulators

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.09.527751

N/A

0DataRank · unranked

8 citations

Hans‐Hermann Wessels, Johannes Linder, Saket Choudhary, Austin Hartman, Yuhan Hao +5 more

Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing v1

(2018)10.17504/protocols.io.n6gdhbw

N/A

0DataRank · unranked

0 citations

David Gennert, Diana Lu, Rahul Satija, Alex K. Shalek, Prisca Liberali +2 more

Multiplexed single-cell characterization of alternative polyadenylation regulators

Cell(2024)10.1016/j.cell.2024.06.005

N/A

0DataRank · unranked

48 citations

Hans‐Hermann Wessels, Johannes Linder, Carol Dalgarno, Isabella Mascio, Saket Choudhary +5 more

Leveraging neighborhood representations of single-cell data to achieve sensitive DE testing with miloDE

Genome biology(2024)10.1186/s13059-024-03334-3

N/A

0DataRank · unranked

23 citations

Emma Dann, Leah Rosen, Rahul Satija, John C. Marioni, Alsu Missarova

SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis

Bioinformatics(2024)10.1093/bioinformatics/btae412

N/A

0DataRank · unranked

10 citations

Kalen Clifton, Mayling Chen, Zhuoyan Li, Lyla Atta, Brendan Miller +4 more

Systems genomics of salinity stress response in rice

eLife(2024)10.7554/elife.99352

N/A

0DataRank · unranked

4 citations

Simon Niels Groen, Maricris Zaidem, A.G. Sajise, Irina Ćalić, Mignon A. Natividad +8 more

Analysis of human factor H-related gene and protein expressed in rheumatoid arthritis synovium identifies a novel mechanism promoting dysregulated complement pathway activation

Scientific Reports(2025)10.1038/s41598-025-03589-1

N/A

0DataRank · unranked

5 citations

Larry W. Moreland, Kevin D. Deane, Dmitri Simberg, Robert I Scheinman, Rachel M. Frank +54 more

Reviewer #4 (Public review): Systems genomics of salinity stress response in rice

(2025)10.7554/elife.99352.2.sa2

N/A

0DataRank · unranked

0 citations

Simon C Groen, Maricris L Zaidem, Andres Godwin C Sajise, Irina Calic, Mignon A Natividad +8 more

Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing v1

(2018)10.17504/protocols.io.pbhdij6

N/A

0DataRank · unranked

0 citations

David Gennert, Diana Lu, Rahul Satija, Alex K. Shalek, Prisca Liberali +2 more

Niche-Selective Inhibition of Pathogenic Th17 Cells by Targeting Metabolic Redundancy

Cell(2020)10.1016/j.cell.2020.06.014

N/A

0DataRank · unranked

115 citations

Kate E.R. Hollinshead, Yuhan Hao, Christy Au, Lina Kroehling, Charles Ng +12 more

geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq

Genome biology(2021)10.1186/s13059-021-02548-z

N/A

0DataRank · unranked

53 citations

Jaison Jain, Andrew Butler, Shila Ghazanfar, Tim Stuart, Maigan A. Brusko +7 more

Arginine Methylation Regulates Ribosome CAR Function

International Journal of Molecular Sciences(2021)10.3390/ijms22031335

N/A

0DataRank · unranked

11 citations

Rahul Satija, Clara Nachmanoff, Daniel Krizanc, Kelly M. Thayer, Michael P. Weir +1 more

Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

Cell Genomics(2022)10.1016/j.xgen.2022.100107

N/A

0DataRank · unranked

163 citations

Hanqing Liu, Fangming Xie, Ethan J. Armand, Kimberly Siletti, Trygve E. Bakken +28 more

Erratum: Deconstructing transcriptional heterogeneity in pluripotent stem cells

Nature(2015)10.1038/nature14150

N/A

0DataRank · unranked

0 citations

Patrick Cahan, Alex K. Shalek, Rahul Satija, A. Jay DaleyKeyser, Hu Li +12 more

The CAR–mRNA Interaction Surface Is a Zipper Extension of the Ribosome A Site

International Journal of Molecular Sciences(2022)10.3390/ijms23031417

N/A

0DataRank · unranked

4 citations

Kristen Scopino, Mitsu Raval, Clara Nachmanoff, Eric D. Sakkas, Daniel Krizanc +3 more

Efficient combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seq

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.02.478894

N/A

0DataRank · unranked

11 citations

Alejandro Méndez‐Mancilla, Efthymia Papalexi, William M. Mauck, Lu Lu, John Morris +5 more

Sensitive cluster-free differential expression testing.

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.08.531744

N/A

0DataRank · unranked

17 citations

Leah U. Rosen, Emma Dann, Rahul Satija, John C. Marioni, Alsu Missarova

Phospho-seq: Integrated, multi-modal profiling of intracellular protein dynamics in single cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.27.534442

N/A

0DataRank · unranked

16 citations

Austin Hartman, Fides Zenk, Rahul Satija, Barbara Treutlein, Rahul Satija +1 more

Rahul Satija

Indexed papers

Top data-sharing exemplar

Papers