Jay Shendure

Also affiliated with University of Washington, Brotman Baty Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

43.4Author DataRank

Indexed papers

16in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 16 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive single-cell transcriptional profiling of a multicellular organism

Science(2017)10.1126/science.aam8940

Top 2%

8.4DataRank

Top 2%1581 citations

Jonathan S. Packer, Vijay Ramani, Darren A. Cusanovich, Chau Huynh, Xiaojie Qiu +9 more

Papers

Driven by 110 papers — median percentile 80. Top paper: “Targeted capture and massively parallel sequencing of 12 human exomes”.

Targeted capture and massively parallel sequencing of 12 human exomes

Nature(2009)10.1038/nature08250

N/A

22.2DataRank · unranked

2036 citations

Emily H. Turner, Peggy D. Robertson, Steven D. Flygare, Abigail W. Bigham, Choli Lee +8 more

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

Science(2020)10.1126/science.abb9263

N/A

13.4DataRank · unranked

308 citations

Wei Gu, Scot Federman, Louis du Plessis, Oliver Pybus, Nuno R. Faria +45 more

A brief history of human disease genetics

Nature(2020)10.1038/s41586-019-1879-7

N/A

9.2DataRank · unranked

738 citations

Judy H. Cho, Rory Collins, Nancy J. Cox, Emmanouil T. Dermitzakis, Matthew E. Hurles +13 more

Comprehensive single-cell transcriptional profiling of a multicellular organism

Science(2017)10.1126/science.aam8940

Top 2%

8.4DataRank

Top 2%1581 citations

Jonathan S. Packer, Vijay Ramani, Darren A. Cusanovich, Chau Huynh, Xiaojie Qiu +9 more

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

Science(2012)10.1126/science.1224344

Top 2%

7.8DataRank

Top 2%2137 citations

Martin Kircher, Marie-Theres Gansauge, Alexandra P. Lewis, Fernando Racimo, Swapan Mallick +31 more

The complete genome sequence of a Neanderthal from the Altai Mountains

Nature(2013)10.1038/nature12886

Top 2%

7.2DataRank

Top 2%2430 citations

Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer +45 more

A human cell atlas of fetal gene expression

Science(2020)10.1126/science.aba7721

Top 3%

6.2DataRank

Top 3%842 citations

Diana R. O’Day, Hannah A. Pliner, Paul D. Kingsley, Mei Deng, Riza M. Daza +12 more

High-content CRISPR screening

Nature Reviews Methods Primers(2022)10.1038/s43586-022-00098-7

N/A

6.0DataRank · unranked

255 citations

Paul Datlinger, Florence M. Chardon, Matthew A. Coelho, Matthew B. Dong, Keith A. Lawson +15 more

A human cell atlas of fetal chromatin accessibility

Science(2020)10.1126/science.aba7612

Top 3%

5.8DataRank

Top 3%466 citations

Andrew J. Hill, Riza M. Daza, Junyue Cao, Diana R. O’Day, Hannah A. Pliner +12 more

Systematic reconstruction of cellular trajectories across mouse embryogenesis

Nature Genetics(2022)10.1038/s41588-022-01018-x

Top 6%

3.8DataRank

Top 6%212 citations

Junyue Cao, Beth Martin, Tony Li, Ian Welsh, Sanjay Srivatsan +10 more

A single-cell time-lapse of mouse prenatal development from gastrula to birth

Nature(2024)10.1038/s41586-024-07069-w

N/A

3.2DataRank · unranked

181 citations

Beth Martin, Ian Welsh, Riza M. Daza, Truc-Mai Le, Xingfan Huang +20 more

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Molecular Cell(2023)10.1016/j.molcel.2023.06.018

N/A

1.7DataRank · unranked

97 citations

Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont +30 more

A single-cell multi-omic atlas spanning the adult rhesus macaque brain

Science Advances(2023)10.1126/sciadv.adh1914

Top 18%

1.2DataRank

Top 18%42 citations

Xingfan Huang, Martin O. Bohlen, Sébastien Tremblay, Alex R. DeCasien, Diana R. O’Day +11 more

Deciphering the impact of genomic variation on function

Nature(2024)10.1038/s41586-024-07510-0

N/A

1.1DataRank · unranked

89 citations

Jesse M. Engreitz, Heather A. Lawson, Harinder Singh, Lea M. Starita, Gary C. Hon +95 more

Accurate classification of BRCA1 variants with saturation genome editing

Nature(2018)10.1038/s41586-018-0461-z

N/A

1.0DataRank · unranked

914 citations

Riza M. Daza, Beth Martin, Melissa D. Zhang, Anh P. Leith, Molly Gasperini +6 more

The Genetic Basis of Mendelian Phenotypes: Discoveries, Challenges, and Opportunities

The American Journal of Human Genetics(2015)10.1016/j.ajhg.2015.06.009

N/A

0.980DataRank · unranked

687 citations

Kati J. Buckingham, Shalini N. Jhangiani, Corinne Boehm, Nara Sobreira, Joshua D. Smith +46 more

Supervised classification enables rapid annotation of cell atlases

Nature Methods(2019)10.1038/s41592-019-0535-3

N/A

0.950DataRank · unranked

563 citations

Jay Shendure, Cole Trapnell, Hannah A. Pliner

Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation

Genome biology(2021)10.1186/s13059-021-02432-w

Top 22%

0.925DataRank

Top 22%27 citations

Vijay Ramani, Ritambhara Singh, He Fang, Dana L. Jackson, Sanjay Srivatsan +9 more

Systematic reconstruction of the cellular trajectories of mammalian embryogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.08.447626

N/A

0.871DataRank · unranked

5 citations

Junyue Cao, Tony Li, Sanjay Srivatsan, Xingfan Huang, Diego Calderon +7 more

How to build the virtual cell with artificial intelligence: Priorities and opportunities

Cell(2024)10.1016/j.cell.2024.11.015

N/A

0.861DataRank · unranked

310 citations

Yusuf Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed +37 more

Predicting cellular responses to complex perturbations in high‐throughput screens

Molecular Systems Biology(2023)10.15252/msb.202211517

N/A

0.832DataRank · unranked

256 citations

Anna Klimovskaia Susmelj, Carlo De Donno, Leon Hetzel, Yuge Ji, Ignacio Ibarra Del Río +16 more

An siRNA-based functional genomics screen for the identification of regulators of ciliogenesis and ciliopathy genes

Nature Cell Biology(2015)10.1038/ncb3201

N/A

0.831DataRank · unranked

253 citations

Gabrielle Wheway, Miriam Schmidts, Dorus A. Mans, Katarzyna Szymanska, Thanh-Minh T. Nguyen +71 more

Evidence for Limited Early Spread of COVID-19 Within the United States, January–February 2020

MMWR Morbidity and Mortality Weekly Report(2020)10.15585/mmwr.mm6922e1

N/A

0.787DataRank · unranked

189 citations

Michelle A. Jorden, Sarah L. Rudman, Elsa Villarino, Stacey Hoferka, Megan T. Patel +32 more

Deep molecular, cellular and temporal phenotyping of developmental perturbations at whole organism scale

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.04.502764

Top 27%

0.735DataRank

Top 27%22 citations

Sanjay Srivatsan, Madeleine Duran, Michael W. Dorrity, Brent Ewing, Tor Linbo +6 more

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008173

N/A

0.705DataRank · unranked

109 citations

Galip Gürkan Yardımcı, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu +7 more

Massively parallel characterization of transcriptional regulatory elements

Nature(2025)10.1038/s41586-024-08430-9

N/A

0.689DataRank · unranked

98 citations

Fumitaka Inoue, Max Schubach, Dmitry Penzar, Beth Martin, Pyaree Mohan Dash +12 more

Single-cell census of human tooth development enables generation of human enamel

Developmental Cell(2023)10.1016/j.devcel.2023.07.013

N/A

0.650DataRank · unranked

75 citations

Sesha Hanson-Drury, Anjali P. Patni, Devon Duron Ehnes, Yan Ting Zhao, Zicong Li +19 more

Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years

Nature Communications(2024)10.1038/s41467-024-48528-2

N/A

0.598DataRank · unranked

53 citations

C. Hansen, Roy Burstein, Shanda Boyle, Robin Prentice, Cooper Marshall +25 more

Proteostasis governs differential temperature sensitivity across embryonic cell types

Cell(2023)10.1016/j.cell.2023.10.013

N/A

0.561DataRank · unranked

41 citations

Lauren M. Saunders, Madeleine Duran, Sanjay Srivatsan, Eliza Barkan, Dana L. Jackson +8 more

Single-cell, whole-embryo phenotyping of mammalian developmental disorders

Nature(2023)10.1038/s41586-023-06548-w

N/A

0.546DataRank · unranked

37 citations

Jana Henck, Chengxiang Qiu, Varun K. A. Sreenivasan, Saranya Balachandran, Oana V. Amarie +36 more

Multiregion transcriptomic profiling of the primate brain reveals signatures of aging and the social environment

Nature Neuroscience(2022)10.1038/s41593-022-01197-0

N/A

0.538DataRank · unranked

35 citations

Alex R. DeCasien, Katherina P. Rees, Camille Testard, Cailyn H. Spurrell, Aishwarya A. Gogate +26 more

SwabExpress: An End-to-End Protocol for Extraction-Free COVID-19 Testing

Clinical Chemistry(2021)10.1093/clinchem/hvab132

N/A

0.529DataRank · unranked

33 citations

Sarah Heidl, Brian Pfau, Beth Martin, Peter D. Han, Weizhi Zhong +37 more

Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.10.531983

N/A

0.514DataRank · unranked

6 citations

Sanjay Srivatsan, Andrew J. Hill, Molly Gasperini, Dana L. Jackson, Lauren M. Saunders +8 more

A single-cell transcriptional timelapse of mouse embryonic development, from gastrula to pup

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.05.535726

N/A

0.470DataRank · unranked

22 citations

Beth Martin, Ian Welsh, Riza M. Daza, Truc-Mai Le, Xingfan Huang +20 more

A multiplex, prime editing framework for identifying drug resistance variants at scale

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.27.550902

N/A

0.457DataRank · unranked

20 citations

Chase C. Suiter, Riza M. Daza, Nahum Smith, Phoebe C. R. Parrish, Troy A. McDiarmid +8 more

Interactions among 17 respiratory pathogens: a cross-sectional study using clinical and community surveillance data

medRxiv(2022)10.1101/2022.02.04.22270474

N/A

0.457DataRank · unranked

20 citations

Benjamin M. Althouse, Amanda Adler, Adam Akullian, Elizabeth Brandstetter, Shari Cho +30 more

Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county

PLoS Pathogens(2024)10.1371/journal.ppat.1012117

N/A

0.441DataRank · unranked

10 citations

Amanda C. Perofsky, Lauren Frisbie, Louise H. Moncla, Pavitra Roychoudhury, Hong Xie +26 more

Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus)

G3 Genes Genomes Genetics(2023)10.1093/g3journal/jkad177

Top 44%

0.421DataRank

Top 44%7 citations

Vahid Nikoonejad Fard, Bernard Kim, Sarah Collins, Miranda Galey, Branden R. Nelson +14 more

Single-cell analysis of chromatin and expression reveals age- and sex-associated alterations in the human heart

Communications Biology(2024)10.1038/s42003-024-06582-y

N/A

0.416DataRank · unranked

15 citations

Gregory T. Booth, Riza M. Daza, Dana L. Jackson, Rula Green Gladden, Sanjay Srivatsan +15 more

Multimodal single‐cell analysis reveals distinct radioresistant stem‐like and progenitor cell populations in murine glioma

Glia(2020)10.1002/glia.23866

N/A

0.373DataRank · unranked

11 citations

Quincey LaPlant, Siobhan S. Pattwell, Frank Szulzewsky, Patrick J. Cimino, Francesca Pia Caruso +13 more

Extensive length and homology dependent chimerism in pool-packaged AAV libraries

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.14.632594

N/A

0.330DataRank · unranked

8 citations

John K. Mich, Chau Huynh, Avery C. Hunker, Troy A. McDiarmid, Boaz P. Levi +3 more

GENOME REPORT: Chromosome-scale genome assembly of the African spiny mouse ( Acomys cahirinus )

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.03.535372

Top 57%

0.279DataRank

Top 57%4 citations

Vahid Nikoonejad Fard, Bernard Kim, Sarah Collins, Miranda Galey, Branden R. Nelson +14 more

Voices in methods development

Nature Methods(2019)10.1038/s41592-019-0585-6

N/A

0.269DataRank · unranked

5 citations

Rosalind Mott Firenze, Clifford Brangwynne, Ibrahim I. Cissé, Oliver Fiehn, Petra Fromme +44 more

Single cell, whole embryo phenotyping of pleiotropic disorders of mammalian development

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.03.500325

N/A

0.269DataRank · unranked

5 citations

Jana Henck, Chengxiang Qiu, Varun K. A. Sreenivasan, Saranya Balachandran, Rose Yinghan Behncke +28 more

Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.20.390765

N/A

0.241DataRank · unranked

4 citations

Vijay Ramani, Ritambhara Singh, He Fang, Dana L. Jackson, Sanjay Srivatsan +9 more

A parts list of promoters and gRNA scaffolds for mammalian genome engineering and molecular recording

Nature Biotechnology(2025)10.1038/s41587-025-02896-2

Top 63%

0.217DataRank

Top 63%3 citations

Megan L. Taylor, Wei Chen, Florence M. Chardon, Junhong Choi, Hanna Liao +12 more

MLX balances metabolism and stress to suppress apoptosis and maintain spermatogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.23.424063

N/A

0.208DataRank · unranked

3 citations

Pei Cheng, Brian Freie, Sivakanthan Kasinathan, Haiwei Gu, Theresa Hedrich +9 more

A single-cell multi-omic atlas spanning the adult rhesus macaque brain

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.30.510346

Top 67%

0.173DataRank

Top 67%2 citations

Xingfan Huang, Martin O. Bohlen, Sébastien Tremblay, Diana R. O’Day, Cailyn H. Spurrell +10 more

Multicondition and multimodal temporal profile inference during mouse embryonic development

Genome Research(2025)10.1101/gr.279997.124

Top 70%

0.165DataRank

Top 70%2 citations

Chengxiang Qiu, Galina N. Filippova, Gang Li, Jay Shendure, Jean‐Philippe Vert +4 more

The proteomic landscape and temporal dynamics of mammalian gastruloid development

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.05.609098

N/A

0.165DataRank · unranked

2 citations

Valerie Lynch, Rose Fields, Silvia Casadei, S Best, Jeremy Stone +10 more

Remote surveillance and detection of SARS-CoV-2 transmission among household members in King County, Washington

BMC Infectious Diseases(2024)10.1186/s12879-024-09160-z

N/A

0.104DataRank · unranked

1 citations

Amanda M. Casto, Jessica Heimonen, Jessica O’Hanlon, Eric J. Chow, Constance Ogokeh +41 more

Multiplex generation and single-cell analysis of structural variants in mammalian genomes

Science(2025)10.1126/science.ado5978

N/A

0DataRank · unranked

20 citations

Jean‐Benoît Lalanne, Riza M. Daza, Sanjay Kottapalli, Faaiz Quaisar, Jonas Koeppel +5 more

Combinatorial mapping of E3 ubiquitin ligases to their target substrates

Molecular Cell(2025)10.1016/j.molcel.2025.01.016

N/A

0DataRank · unranked

20 citations

Diego Calderon, David Lee, Melodie Chiu, Shruti Jain, Florence M. Chardon +6 more

CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation

BMC Biology(2025)10.1186/s12915-025-02137-7

N/A

0DataRank · unranked

4 citations

Ana R. Tronco, Giancarlo Bonora, Truong N. Nguyen, Jitendra Thakur, Joel B. Berletch +8 more

A molecular proximity sensor based on an engineered, dual-component guide RNA

eLife(2025)10.7554/elife.98110.3

N/A

0DataRank · unranked

3 citations

Wei Chen, Hanna Liao, Xiaoyi Li, Jay Shendure, Junhong Choi

Lineage recording in monoclonal gastruloids reveals heritable modes of early development

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.23.655664

N/A

0DataRank · unranked

7 citations

Chengxiang Qiu, Sanjay Kottapalli, Beth Martin, Wei Chen, Hanna Liao +8 more

Barcoded monoclonal embryoids are a potential solution to confounding bottlenecks in mosaic organoid screens

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.23.655669

N/A

0DataRank · unranked

4 citations

Chengxiang Qiu, Jean‐Benoît Lalanne, Beth Martin, Madeleine Duran, Cole Trapnell +4 more

Multiplex design and discovery of proximity handles for programmable proteome editing

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.681693

N/A

0DataRank · unranked

2 citations

Green Ahn, Melodie Chiu, Yi Fu, Shayan Sadre, Jessica J. Simon +6 more

An Improved, High-Yield Method for Isolating Nuclei from Individual Zebrafish Embryos for Single-Nucleus RNA Sequencing

Zebrafish(2025)10.1089/zeb.2024.0175

N/A

0DataRank · unranked

0 citations

Heidi Lee, Amy Tresenrider, Riza M. Daza, Andrew R. Mullen, Jay Shendure +3 more

Single-cell analysis of chromatin and expression reveals age- and sex-associated alterations in the human heart

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.12.496461

N/A

0DataRank · unranked

7 citations

Gregory T. Booth, Riza M. Daza, Dana L. Jackson, Rula Green Gladden, Sanjay Srivatsan +13 more

Sci-fate characterizes the dynamics of gene expression in single cells

Nature Biotechnology(2020)10.1038/s41587-020-0480-9

N/A

0DataRank · unranked

183 citations

Wei Zhou, Frank J. Steemers, Cole Trapnell, Jay Shendure, Junyue Cao

Cryptic transmission of SARS-CoV-2 in Washington state

Science(2020)10.1126/science.abc0523

N/A

0DataRank · unranked

329 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lea M. Starita, Michael Famulare, Meei‐Li Huang +62 more

Predicting mRNA Abundance Directly from Genomic Sequence Using Deep Convolutional Neural Networks

Cell Reports(2020)10.1016/j.celrep.2020.107663

N/A

0DataRank · unranked

274 citations

Jay Shendure, Vikram Agarwal

Elevated exopolysaccharide levels in Pseudomonas aeruginosa flagellar mutants have implications for biofilm growth and chronic infections

PLoS Genetics(2020)10.1371/journal.pgen.1008848

N/A

0DataRank · unranked

90 citations

Henrik Almblad, Yasuhiko Irie, Daniel J. Wolter, Heather Eggleston, Trevor E. Randall +10 more

Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome

Nature Communications(2020)10.1038/s41467-020-19879-3

N/A

0DataRank · unranked

64 citations

Giancarlo Bonora, Jordan P. Lewandowski, Jitendra Thakur, Galina N. Filippova, Steven Henikoff +7 more

Mutations in RSPH1 cause primary ciliary dyskinesia with a unique clinical and ciliary phenotype

UNC Libraries(2020)10.17615/tghp-rn94

N/A

0DataRank · unranked

22 citations

M.A. Zariwala, C.A. Olson, W. Yin, L.E. Ostrowski, Sylvia Kohl +31 more

Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster

UNC Libraries(2020)10.17615/50g2-jv23

N/A

0DataRank · unranked

12 citations

Carrie Davis, David Sturgill, Di Kim Nguyen, LaDeana Hillier, Joseph B. Hiatt +10 more

Cryptic transmission of SARS-CoV-2 in Washington State

medRxiv(2020)10.1101/2020.04.02.20051417

N/A

0DataRank · unranked

86 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lea M. Starita, Michael Famulare, Meei‐Li Huang +52 more

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

medRxiv(2020)10.1101/2020.03.27.20044925

N/A

0DataRank · unranked

36 citations

Wei Gu, Scot Federman, Louis du Plessis, Oliver Pybus, Nuno R. Faria +43 more

A systematic evaluation of the design, orientation, and sequence context dependencies of massively parallel reporter assays

(2020)10.21203/rs.3.pex-1065/v1

N/A

0DataRank · unranked

14 citations

Vikram Agarwal, Fumitaka Inoue, Aidan Keith, Beth Martin, Martin Kircher +3 more

Rapid cost-effective viral genome sequencing by V-seq

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.15.252510

N/A

0DataRank · unranked

13 citations

James Boocock, Jacob M. Tome, Sukantha Chandrasekaran, Evann E. Hilt, Yi Zhang +14 more

A hybrid open-top light-sheet microscope for multi-scale imaging of cleared tissues

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.06.081745

N/A

0DataRank · unranked

8 citations

Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao +32 more

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.26.269027

N/A

0DataRank · unranked

0 citations

E. Christopher Partridge, Bryan A. Moyers, Vikram Agarwal, Kimberly M. Newberry, Beth Martin +4 more

Non-Invasive Fetal Genome Sequencing: Opportunities and Challenges

(2020)10.4324/9781003074984-13

N/A

0DataRank · unranked

0 citations

Jeffrey C. Murray, Hilary S. Gammill, Jacob O. Kitzman, Matthew W. Snyder, Mario Ventura +10 more

Whole-Exome Capture and Sequencing Identifies HEATR2 Mutation as a Cause of Primary Ciliary Dyskinesia

UNC Libraries(2020)10.17615/d4h2-zc14

N/A

0DataRank · unranked

0 citations

Benjamin T Levinson, Emily H. Turner, Michael R. Knowles, Amjad Horani, Thomas W. Ferkol +14 more

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

Science Translational Medicine(2021)10.1126/scitranslmed.abf0202

N/A

0DataRank · unranked

80 citations

Cassia Wagner, Chris Frazar, Pavitra Roychoudhury, Jover Lee, Louise H. Moncla +38 more

Adaptations in Hippo-Yap signaling and myofibroblast fate underlie scar-free ear appendage wound healing in spiny mice

Developmental Cell(2021)10.1016/j.devcel.2021.09.008

N/A

0DataRank · unranked

80 citations

Branden R. Nelson, Paul Wakenight, Sarah Collins, Daryl M. Okamura, Xiu Rong Dong +7 more

The landscape of alternative polyadenylation in single cells of the developing mouse embryo

Nature Communications(2021)10.1038/s41467-021-25388-8

N/A

0DataRank · unranked

66 citations

Sereno Lopez-Darwin, David R. Kelley, Jay Shendure, Vikram Agarwal

The glucose-sensing transcription factor MLX balances metabolism and stress to suppress apoptosis and maintain spermatogenesis

PLoS Biology(2021)10.1371/journal.pbio.3001085

N/A

0DataRank · unranked

26 citations

Brian Freie, Pei Cheng, Sivakanthan Kasinathan, Haiwei Gu, Theresa Hedrich +10 more

The Seattle Flu Study: when regulations hinder pandemic surveillance

Nature Medicine(2021)10.1038/s41591-021-01587-0

N/A

0DataRank · unranked

7 citations

Helen Y. Chu, Janet A. Englund, Christina M. Lockwood, Deborah A. Nickerson, Jay Shendure +2 more

Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

Genome Research(2021)10.1101/gr.271791.120

N/A

0DataRank · unranked

26 citations

Riza M. Daza, Louis Gevirtzman, Darren A. Cusanovich, Olubusayo Bolonduro, William Stafford Noble +3 more

A hybrid open-top light-sheet microscope for multi-scale imaging of cleared tissues

Research Square(2021)10.21203/rs.3.rs-860253/v1

N/A

0DataRank · unranked

10 citations

Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao +32 more

SARS-CoV-2 Epidemiology on a Public University Campus in Washington State

medRxiv(2021)10.1101/2021.03.15.21253227

N/A

0DataRank · unranked

6 citations

Sarah L Sohlberg, Jessica O’Hanlon, Amanda M. Casto, Anne Emanuels, Natalie Lo +31 more

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

Genome Research(2021)10.1101/gr.270751.120

N/A

0DataRank · unranked

6 citations

E. Christopher Partridge, Bryan A. Moyers, Vikram Agarwal, Kimberly M. Newberry, Beth Martin +4 more

Simultaneous Identification of Brain Cell Type and Lineage via Single Cell RNA Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2020.12.31.425016

N/A

0DataRank · unranked

2 citations

Florian M. Pauler, Aaron McKenna, Jay Shendure, Simon Hippenmeyer, Marshall S. Horwitz +1 more

Exome Sequencing Identifies Mutations in CCDC114 as a Cause of Primary Ciliary Dyskinesia

UNC Libraries(2021)10.17615/c3t0-gh30

N/A

0DataRank · unranked

0 citations

Maimoona A. Zariwala, Johnny L. Carson, Margaret Rosenfeld, Stephanie D. Davis, Margaret W. Leigh +16 more

A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues

Nature Methods(2022)10.1038/s41592-022-01468-5

N/A

0DataRank · unranked

178 citations

Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao +32 more

Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development

Cell Systems(2022)10.1016/j.cels.2022.03.006

N/A

0DataRank · unranked

10 citations

Florian M. Pauler, Aaron McKenna, Jay Shendure, Simon Hippenmeyer, Marshall S. Horwitz +1 more

SARS-CoV-2 Screening Testing in Schools: A Comparison of School- Vs. Home-Based Collection Methods

Journal of the Pediatric Infectious Diseases Society(2022)10.1093/jpids/piac097

N/A

0DataRank · unranked

1 citations

Ariana Magedson, Anne Emanuels, Kyle G Luiten, Brian Pfau, Melissa Truong +10 more

Proteostasis governs differential temperature sensitivity across embryonic cell types

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.04.502669

N/A

0DataRank · unranked

11 citations

Lauren M. Saunders, Madeleine Duran, Sanjay Srivatsan, Brent Ewing, Christine Queitsch +5 more

Tethering distinct molecular profiles of single cells by their lineage histories to investigate sources of cell state heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.12.491602

N/A

0DataRank · unranked

7 citations

Junyue Cao, Jay Shendure, Anna Minkina

Flexible and scalable control of T cell memory by a reversible epigenetic switch

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.31.521782

N/A

0DataRank · unranked

4 citations

Elisa C. Clark, Obinna Ukogu, Wei Yang, Riza M. Daza, Kenneth K.H. Ng +8 more

High Density Domain-Focused CRISPR Screens Reveal Novel Epigenetic Regulators of HOX/MEIS Activation in Acute Myeloid Leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.12.519332

N/A

0DataRank · unranked

1 citations

Anagha Deshpande, Marlenne Perales, Ping Xiang, Rabi Murad, Anna Minkina +14 more

Oncogenic role of a developmentally regulated NTRK2 splice variant

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.07.475392

N/A

0DataRank · unranked

0 citations

Sonali Arora, Nicholas Nuechterlein, Michael Zager, Keith R. Loeb, Patrick J. Cimino +13 more

Machine learning dissection of human accelerated regions in primate neurodevelopment

Neuron(2023)10.1016/j.neuron.2022.12.026

N/A

0DataRank · unranked

96 citations

Fumitaka Inoue, Hane Ryu, Tyler Fair, Eirene Markenscoff-Papadimitriou, Kathleen C. Keough +17 more

High-capacity sample multiplexing for single cell chromatin accessibility profiling

BMC Genomics(2023)10.1186/s12864-023-09832-1

N/A

0DataRank · unranked

3 citations

Riza M. Daza, Sanjay Srivatsan, José L. McFaline‐Figueroa, Rula Green Gladden, Andrew C. Mullen +4 more

Massively parallel characterization of transcriptional regulatory elements in three diverse human cell types

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.05.531189

N/A

0DataRank · unranked

53 citations

Fumitaka Inoue, Max Schubach, Beth Martin, Pyaree Mohan Dash, Zicong Zhang +7 more

Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.14.532666

N/A

0DataRank · unranked

10 citations

Rachel L. Redler, Ashish Phal, Thomas Schlichthaerle, Sanjay Srivatsan, Ali Etemadi +27 more

CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.539469

N/A

0DataRank · unranked

6 citations

Ana R. Tronco, Giancarlo Bonora, Truong N. Nguyen, Jitendra Thakur, Joel B. Berletch +7 more

High-Capacity Sample Multiplexing for Single Cell Chromatin Accessibility Profiling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.05.531201

N/A

0DataRank · unranked

3 citations

Riza M. Daza, Sanjay Srivatsan, José L. McFaline‐Figueroa, Rula Green Gladden, Scott N. Furlan +3 more

Human mobility impacts the transmission of common respiratory viruses: A modeling study of the Seattle metropolitan area

medRxiv(2023)10.1101/2023.10.31.23297868

N/A

0DataRank · unranked

2 citations

C. Hansen, Roy Burstein, Shanda Boyle, Robin Prentice, Cooper Marshall +25 more

Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies

Cell(2024)10.1016/j.cell.2024.05.025

N/A

0DataRank · unranked

56 citations

Ashish Phal, Rachel L. Redler, Thomas Schlichthaerle, Sanjay Srivatsan, Devon Duron Ehnes +35 more

Reversible, tunable epigenetic silencing of TCF1 generates flexibility in the T cell memory decision

Immunity(2024)10.1016/j.immuni.2023.12.006

N/A

0DataRank · unranked

52 citations

Elisa C. Clark, Rajesh M. Valanparambil, Obinna Ukogu, Wei Yang, Riza M. Daza +12 more

Genetic Tools for Cell Lineage Tracing and Profiling Developmental Trajectories in the Skin

Journal of Investigative Dermatology(2024)10.1016/j.jid.2024.02.006

N/A

0DataRank · unranked

10 citations

Jessica Ayers, Jay Shendure, Cory L. Simpson, Jenny F. Nathans

Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy

Cell Genomics(2024)10.1016/j.xgen.2023.100487

N/A

0DataRank · unranked

17 citations

Sanjay Srivatsan, Andrew J. Hill, Molly Gasperini, Dana L. Jackson, Lauren M. Saunders +8 more

Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER

Nature Methods(2024)10.1038/s41592-024-02512-2

N/A

0DataRank · unranked

9 citations

Valentino E. Browning, Mary Krebs, Yuzhen Liu, Eva K. Nichols, Ashley F. Tsue +7 more

Clinical and Genomic Epidemiology of Coxsackievirus A21 and Enterovirus D68 in Homeless Shelters, King County, Washington, USA, 2019–2021

Emerging infectious diseases(2024)10.3201/eid3011.240687

N/A

0DataRank · unranked

1 citations

Amanda M. Casto, Nicholas Franko, Eric J. Chow, Peter D. Han, Luis Fernando Gamboa +18 more

Multiplex generation and single cell analysis of structural variants in a mammalian genome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.22.576756

N/A

0DataRank · unranked

8 citations

Jean‐Benoît Lalanne, Riza M. Daza, Jonas Koeppel, Xiaoyi Li, David Lee +2 more

A molecular proximity sensor based on an engineered, dual-component guide RNA

eLife(2024)10.7554/elife.98110

N/A

0DataRank · unranked

1 citations

Wei Chen, Hanna Liao, Xiaoyi Li, Jay Shendure, Junhong Choi

An improved, high yield method for isolating nuclei from individual zebrafish embryos for single-nucleus RNA sequencing

arXiv (Cornell University)(2024)10.48550/arxiv.2411.15309

N/A

0DataRank · unranked

0 citations

Heidi Lee, Amy Tresenrider, Riza M. Daza, Andrew R. Mullen, Jay Shendure +3 more

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