H. Tomas Rube

Also affiliated with Columbia University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “Systematic in vitro profiling of off-target affinity, cleavage and efficiency for CRISPR enzymes”.

Systematic in vitro profiling of off-target affinity, cleavage and efficiency for CRISPR enzymes

Nucleic Acids Research(2020)10.1093/nar/gkaa231

N/A

1.7DataRank · unranked

47 citations

H. Tomas Rube, Christopher A. Vakulskas, Mark A. Behlke, Harmen J. Bussemaker, Miles A. Pufall +1 more

Categorical spectral analysis of periodicity in nucleosomal DNA

Nucleic Acids Research(2016)10.1093/nar/gkw101

N/A

0.983DataRank · unranked

32 citations

H. Tomas Rube, Jun S. Song, Hu Jin

Measuring DNA mechanics on the genome scale

Nature(2020)10.1038/s41586-020-03052-3

N/A

0.745DataRank · unranked

143 citations

Dmitriy G. Bobrovnikov, Zan Qureshi, Tunc Kayikcioglu, Thuy T. M. Ngo, Anand Ranjan +10 more

SPIDR enables multiplexed mapping of RNA-protein interactions and uncovers a mechanism for selective translational suppression upon cell stress

Cell(2025)10.1016/j.cell.2025.06.042

N/A

0.512DataRank · unranked

19 citations

Jimmy K. Guo, Mario R. Blanco, Isabel N. Goronzy, Darvesh Gorhe, Wenzhao Dong +11 more

Prediction of protein–ligand binding affinity from sequencing data with interpretable machine learning

Nature Biotechnology(2022)10.1038/s41587-022-01307-0

N/A

0DataRank · unranked

136 citations

Chaitanya Rastogi, Siqian Feng, Judith F. Kribelbauer, Allyson Li, Basheer Becerra +8 more

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors

Nature Communications(2022)10.1038/s41467-022-31501-2

N/A

0DataRank · unranked

40 citations

Chaitanya Rastogi, Ryan Loker, William J. Glassford, H. Tomas Rube, Harmen J. Bussemaker +2 more

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.26.482133

N/A

0DataRank · unranked

5 citations

Chaitanya Rastogi, Ryan Loker, William J. Glassford, H. Tomas Rube, Harmen J. Bussemaker +2 more

Accurate sequence-to-affinity models for SH2 domains from multi-round peptide binding assays coupled with free-energy regression

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.23.630085

N/A

0DataRank · unranked

0 citations

H. Tomas Rube, Chaitanya Rastogi, Lucas A. N. Melo, Xiaoting Li, Rashmi Voleti +3 more

Accurate affinity models for SH2 domains from peptide binding assays and free‐energy regression

Protein Science(2025)10.1002/pro.70317

N/A

0DataRank · unranked

1 citations

H. Tomas Rube, Chaitanya Rastogi, Lucas A. N. Melo, Xiaoting Li, Rashmi Voleti +3 more

Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins

Molecular Cell(2020)10.1016/j.molcel.2020.01.027

N/A

0DataRank · unranked

40 citations

Ryan Loker, Siqian Feng, Chaitanya Rastogi, Namiko Abe, H. Tomas Rube +3 more

Measuring DNA mechanics on the genome scale

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.255042

N/A

0DataRank · unranked

12 citations

Dmitriy G. Bobrovnikov, Zan Qureshi, Tunc Kayikcioglu, Thuy T. M. Ngo, Anand Ranjan +10 more

Probing molecular specificity with deep sequencing and biophysically interpretable machine learning

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.30.450414

N/A

0DataRank · unranked

1 citations

Chaitanya Rastogi, Siqian Feng, Judith F. Kribelbauer, Allyson Li, Basheer Becerra +8 more