Gavin Sherlock

Also affiliated with Stanford Medicine, Stanford University

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.4Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Saccharomyces Genome Database: advances in genome annotation, expanded biochemical pathways, and other key enhancements

Genetics(2024)10.1093/genetics/iyae185

Top 20%

0.998DataRank

Top 20%76 citations

Suzi Aleksander, Robert S Nash, Edith D. Wong, Shuai Weng, Stuart R. Miyasato +3 more

Papers

Driven by 38 papers — median percentile 70. Top paper: “Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)”.

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Nature Biotechnology(2008)10.1038/nbt1391

N/A

6.5DataRank · unranked

114 citations

On behalf of the MGED Society, Jules J. Berman, G. Steven Bova, Ann-Christine Syvanen, Roger E. Bumgarner +40 more

Submission of Microarray Data to Public Repositories

PLoS Biology(2004)10.1371/journal.pbio.0020317

N/A

6.1DataRank · unranked

122 citations

Ann-Christine Syvanen, Helen Causton, Steve Chervitz, Ron Edgar, Daniele Iudicone +15 more

Gene Ontology: tool for the unification of biology

Nature Genetics(2000)10.1038/75556

N/A

1.6DataRank · unranked

44989 citations

Catherine A. Ball, Judith A. Blake, David Botstein, Heather Butler, J. Michael Cherry +15 more

Microarray Data Standards: An Open Letter

Environmental Health Perspectives(2004)10.1289/ehp.112-1277123

N/A

1.6DataRank · unranked

23 citations

Ann-Christine Syvanen, Helen Causton, Steve Chervitz, Ron Edgar, Daniele Iudicone +14 more

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

Nature(2000)10.1038/35000501

N/A

1.4DataRank · unranked

9923 citations

Michael B. Eisen, R. Eric Davis, Chi Ma, Izidore S. Lossos, Andreas Rosenwald +32 more

Integrated genomic analyses of ovarian carcinoma

Nature(2011)10.1038/nature10166

N/A

1.3DataRank · unranked

8094 citations

Debra Bell, Andrew Berchuck, Michael J. Birrer, Jeremy Chien, D. W. Cramer +268 more

Missing value estimation methods for DNA microarrays

Bioinformatics(2001)10.1093/bioinformatics/17.6.520

N/A

1.3DataRank · unranked

4216 citations

Michael Cantor, Gavin Sherlock, Pat Brown, Trevor Hastie, Robert Tibshirani +3 more

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

Nature(2009)10.1038/nature08064

N/A

1.1DataRank · unranked

1097 citations

Albert J. Vilella, Alireza Heravi-Moussavi, Manuel A. S. Santos, Sharadha Sakthikumar, Carol A. Munro +52 more

Saccharomyces Genome Database: advances in genome annotation, expanded biochemical pathways, and other key enhancements

Genetics(2024)10.1093/genetics/iyae185

Top 20%

0.998DataRank

Top 20%76 citations

Suzi Aleksander, Robert S Nash, Edith D. Wong, Shuai Weng, Stuart R. Miyasato +3 more

The Gene Ontology knowledgebase in 2026

Nucleic Acids Research(2025)10.1093/nar/gkaf1292

Top 27%

0.743DataRank

Top 27%95 citations

James P. Balhoff, Seth Carbon, J. Michael Cherry, Dustin Ebert, Marc Feuermann +95 more

The Candida Genome Database: annotation and visualization updates

Genetics(2025)10.1093/genetics/iyaf001

Top 32%

0.609DataRank

Top 32%27 citations

Jonathan Binkley, Gavin Sherlock, Jodi Lew-Smith

Wrestling with SUMO and bio-ontologies

Nature Biotechnology(2006)10.1038/nbt0106-21b

N/A

0.554DataRank · unranked

4 citations

Ann-Christine Syvanen, Helen Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso +24 more

Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries

Nucleic Acids Research(2024)10.1093/nar/gkae332

N/A

0.510DataRank · unranked

11 citations

Darach Miller, Xianan Liu, Lorenzo Tosi, Lamia Chkaiban, Mei Han +5 more

Updates to the Alliance of Genome Resources Central Infrastructure Alliance of Genome Resources Consortium

10.1101/2023.11.20.567935

Top 65%

0.208DataRank

Top 65%3 citations

Anna V. Anagnostopoulos, Giulia Antonazzo, Valerio Arnaboldi, Helen Attrill, Andrés Becerra +96 more

Adaptation is influenced by the complexity of environmental change during evolution in a dynamic environment

PLoS Genetics(2021)10.1371/journal.pgen.1009314

N/A

0DataRank · unranked

56 citations

Lucas Hérissant, Gavin Sherlock, Sébastien Boyer

Evolutionary dynamics and structural consequences of de novo beneficial mutations and mutant lineages arising in a constant environment

BMC Biology(2021)10.1186/s12915-021-00954-0

N/A

0DataRank · unranked

13 citations

Katja Schwartz, Dongdong Yang, Gavin Sherlock, Frank Rosenzweig, Margie Kinnersley

Simulation-based inference of evolutionary parameters from adaptation dynamics using neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.30.462581

N/A

0DataRank · unranked

2 citations

Julie N. Chuong, Fangfei Li, Gavin Sherlock, David Gresham, Yoav Ram +1 more

Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics

PLoS Biology(2022)10.1371/journal.pbio.3001633

N/A

0DataRank · unranked

36 citations

Julie N. Chuong, Fangfei Li, Gavin Sherlock, David Gresham, Yoav Ram +1 more

Paths to adaptation under fluctuating nitrogen starvation: The spectrum of adaptive mutations in Saccharomyces cerevisiae is shaped by transposons and microhomology-mediated recombination

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.11.491585

N/A

0DataRank · unranked

1 citations

Katja Schwartz, Danica T. Schmidtke, Dimitra Aggeli, Gavin Sherlock, Michelle Hays

Paths to adaptation under fluctuating nitrogen starvation: The spectrum of adaptive mutations in Saccharomyces cerevisiae is shaped by retrotransposons and microhomology-mediated recombination

PLoS Genetics(2023)10.1371/journal.pgen.1010747

N/A

0DataRank · unranked

23 citations

Katja Schwartz, Danica T. Schmidtke, Dimitra Aggeli, Gavin Sherlock, Michelle Hays

Fit-Seq2.0: An Improved Software for High-Throughput Fitness Measurements Using Pooled Competition Assays

Journal of Molecular Evolution(2023)10.1007/s00239-023-10098-0

N/A

0DataRank · unranked

24 citations

Jason Tarkington, Gavin Sherlock, Fangfei Li

Improved Sugarcane-Based Fermentation Processes by an Industrial Fuel-Ethanol Yeast Strain

Journal of Fungi(2023)10.3390/jof9080803

N/A

0DataRank · unranked

17 citations

Victor Ribeiro de Godoy, Marcelo Goulart Dário, Eduarda Hallal Duval, Sérgio L. Alves, Augusto Bücker +5 more

Yca1 metacaspase: diverse functions determine how yeast live and let die

FEMS Yeast Research(2023)10.1093/femsyr/foad022

N/A

0DataRank · unranked

12 citations

Gavin Sherlock, Darren K Lam

Experimental evolution for cell biology

Trends in Cell Biology(2023)10.1016/j.tcb.2023.04.006

N/A

0DataRank · unranked

11 citations

Gavin Sherlock, Gautam Dey, Jana Helsen

An improved algorithm for inferring mutational parameters from bar-seq evolution experiments

BMC Genomics(2023)10.1186/s12864-023-09345-x

N/A

0DataRank · unranked

5 citations

Aditya Mahadevan, Gavin Sherlock, Fangfei Li

Comparative Genomic Analysis and Phenotypic Characterization of Saccharomyces cerevisiae Strains used in Sugarcane-based Fermentation Processes to Improve Sucrose Fermentation by an Industrial Fuel-ethanol Yeast Strain

Preprints.org(2023)10.20944/preprints202307.0309.v1

N/A

0DataRank · unranked

1 citations

Victor Ribeiro de Godoy, Marcelo Goulart Dário, Eduarda Hallal Duval, Sérgio L. Alves, Augusto Bücker +5 more

A high-resolution two-step evolution experiment in yeast reveals a shift from pleiotropic to modular adaptation

PLoS Biology(2024)10.1371/journal.pbio.3002848

N/A

0DataRank · unranked

11 citations

Yuping Li, Gavin Sherlock, Dmitri A. Petrov, Grant Kinsler

Microbe Profile: Candida glabrata – a master of deception

Microbiology(2024)10.1099/mic.0.001518

N/A

0DataRank · unranked

9 citations

Emily Cook, Gavin Sherlock, Frank Rosenzweig, Maria Granada

The Viral K1 Killer Yeast System: Toxicity, Immunity, and Resistance

Yeast(2024)10.1002/yea.3987

N/A

0DataRank · unranked

5 citations

Michelle Hays, Gavin Sherlock, Angelina Chan

Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.20.585998

N/A

0DataRank · unranked

25 citations

Angela Shang-Mei Hickey, Ivan Liachko, Gavin Sherlock, Ami S. Bhatt, Danica T. Schmidtke

The prototypic crAssphage is a linear phage-plasmid

Cell Host & Microbe(2025)10.1016/j.chom.2025.07.004

N/A

0DataRank · unranked

19 citations

Angela Shang-Mei Hickey, Jakob Wirbel, Jordan D. Lin, Ivan Liachko, Gavin Sherlock +2 more

Adaptive genetics reveals constraints on protein structure/function by evolving E. coli under constant nutrient limitation

BMC Biology(2025)10.1186/s12915-025-02331-7

N/A

0DataRank · unranked

1 citations

Margie Kinnersley, Charles Ross Lindsey, Gavin Sherlock, Frank Rosenzweig, Katja Schwartz

Changes to NIH Grant System May Backfire

Science(2008)10.1126/science.322.5905.1187c

N/A

0DataRank · unranked

0 citations

Gavin Sherlock, John A. Gerlt, Ida Sim, Ian Paulsen, Patricia C. Babbitt +9 more

Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages

Nature Communications(2020)10.1038/s41467-019-14103-3

N/A

0DataRank · unranked

80 citations

Fiona B. Tamburini, Gavin Sherlock, Ami S. Bhatt, Benjamin A. Siranosian

Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumors

UNC Libraries(2020)10.17615/awrf-kz95

N/A

0DataRank · unranked

2 citations

John C. Matese, Karen E. Alexander, Myra M. Hurt, John I. Murray, Alok J. Saldanha +6 more

Changes in the distribution of fitness effects and adaptive mutational spectra following a single first step towards adaptation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.148833

N/A

0DataRank · unranked

7 citations

Yuping Li, Gavin Sherlock, Dimitra Aggeli

Quantifying the interplay between rapid bacterial evolution within the mouse intestine and transmission between hosts

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.04.412072

N/A

0DataRank · unranked

5 citations

Lisa Willis, Nate Cira, Katharine M. Ng, Miguel F. Pedro, Andrés Aranda-Díaz +11 more

Quantifying rapid bacterial evolution and transmission within the mouse intestine

Cell Host & Microbe(2021)10.1016/j.chom.2021.08.003

N/A

0DataRank · unranked

56 citations

Lisa Willis, Nate Cira, Katharine M. Ng, Miguel F. Pedro, Andrés Aranda-Díaz +11 more

Gavin Sherlock

Indexed papers

Top data-sharing exemplar

Papers