Michael Shaffer

Biochemistry, Genetics and Molecular BiologyArts and HumanitiesHealth Professions

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “DRAM for distilling microbial metabolism to automate the curation of microbiome function”.

DRAM for distilling microbial metabolism to automate the curation of microbiome function

Nucleic Acids Research(2020)10.1093/nar/gkaa621

N/A

1.1DataRank · unranked

1125 citations

Mikayla Borton, Bridget B. McGivern, Ahmed A. Zayed, Sabina Leanti La Rosa, Lindsey Solden +13 more

A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables

Nature Microbiology(2024)10.1038/s41564-023-01580-y

N/A

0.652DataRank · unranked

76 citations

Aeriel D. Belk, Bridget B. McGivern, Amina Bouslimani, Parsa Ghadermazi, Cameron Martino +32 more

DRAM for distilling microbial metabolism to automate the curation of microbiome function

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.29.177501

N/A

0.650DataRank · unranked

75 citations

Mikayla Borton, Bridget B. McGivern, Ahmed A. Zayed, Sabina Leanti La Rosa, Lindsey Solden +13 more

Targeted curation of the gut microbial gene content modulating human cardiovascular disease

mBio(2023)10.1128/mbio.01511-23

N/A

0.581DataRank · unranked

9 citations

Michael Shaffer, David Hoyt, Ruisheng Jiang, Jared Ellenbogen, Samuel Purvine +8 more

SCNIC: Sparse Correlation Network Investigation for Compositional Data

(2022)10.22541/au.165815492.24601086/v1

N/A

0DataRank · unranked

2 citations

Kumar Thurimella, John Sterrett, Catherine Lozupone, Michael Shaffer

Exposing New Taxonomic Variation with Inflammation – A Murine Model-Specific Genome Database for Gut Microbiome Researchers

Research Square(2022)10.21203/rs.3.rs-2238488/v1

N/A

0DataRank · unranked

0 citations

Josué Rodríguez-Ramos, Michael Shaffer, Anice Sabag-Daigle, Katherine Kokkinias, Rory M. Flynn +7 more

kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase

Bioinformatics(2023)10.1093/bioinformatics/btad110

N/A

0DataRank · unranked

17 citations

Mikayla Borton, Ben Bolduc, José P. Faria, Rory M. Flynn, Parsa Ghadermazi +8 more

Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers

Microbiome(2023)10.1186/s40168-023-01529-7

N/A

0DataRank · unranked

15 citations

Josué Rodríguez-Ramos, Michael Shaffer, Anice Sabag-Daigle, Katherine Kokkinias, Rory M. Flynn +7 more

Gut microbiota carbon and sulfur metabolisms support Salmonella infections

The ISME Journal(2024)10.1093/ismejo/wrae187

N/A

0DataRank · unranked

11 citations

Katherine Kokkinias, Yong-Seok Kim, Maryam Baniasad, Michael Shaffer, Anice Sabag-Daigle +7 more

Time-resolved multi-omics reveals diverse metabolic strategies of Salmonella during diet-induced inflammation

mSphere(2024)10.1128/msphere.00534-24

N/A

0DataRank · unranked

6 citations

Anice Sabag-Daigle, Yong-Seok Kim, Ikaia Leleiwi, Michael Shaffer, R.T. Kevorkian +6 more

Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00172

N/A

0DataRank · unranked

3 citations

Katherine Kokkinias, Anice Sabag-Daigle, Ikaia Leleiwi, Mikayla Borton, Michael Shaffer +6 more

Gut microbiome carbon and sulfur metabolisms support Salmonella during pathogen infection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.16.575907

N/A

0DataRank · unranked

1 citations

Katherine Kokkinias, Yong-Seok Kim, Maryam Baniasad, Michael Shaffer, Anice Sabag-Daigle +7 more

Time-resolved multi-omics illustrates host and gut microbe interactions during Salmonella infection.

ChemRxiv(2024)10.26434/chemrxiv-2024-30kxx

N/A

0DataRank · unranked

1 citations

Katherine Kokkinias, Anice Sab-Daigle, Ikaia Leleiwi, Mikayla Borton, Michael Shaffer +6 more

Time resolved multi-omics reveals diverse metabolic strategies of Salmonella during diet-induced inflammation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.03.578763

N/A

0DataRank · unranked

0 citations

Anice Sabag-Daigle, Yong-Seok Kim, Ikaia Leleiwi, Michael Shaffer, R.T. Kevorkian +6 more

SCNIC: Sparse Correlation Network Investigation for Compositional Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.13.380733

N/A

0DataRank · unranked

18 citations

Kumar Thurimella, John Sterrett, Catherine Lozupone, Michael Shaffer

Optimization of proteomics sample preparation for identification of host and bacterial proteins in mouse feces

Analytical and Bioanalytical Chemistry(2022)10.1007/s00216-022-03885-z

N/A

0DataRank · unranked

12 citations

Yong-Seok Kim, Michael Shaffer, Anice Sabag-Daigle, Ikaia Leleiwi, Rebecca A. Daly +4 more

Exposing New Taxonomic Variation with Inflammation – A Murine Model-Specific Genome Database for Gut Microbiome Researchers

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.513540

N/A

0DataRank · unranked

3 citations

Josué Rodríguez-Ramos, Michael Shaffer, Anice Sabag-Daigle, Katherine Kokkinias, Rory M. Flynn +7 more