Soumya Raychaudhuri

ORCID: 0000-0002-1901-8265

Also affiliated with Brigham and Women's Hospital, Harvard University

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.8Author DataRank

Indexed papers

7in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Papers

Driven by 106 papers — median percentile 68. Top paper: “Notch signalling drives synovial fibroblast identity and arthritis pathology”.

Notch signalling drives synovial fibroblast identity and arthritis pathology

Nature(2020)10.1038/s41586-020-2222-z

N/A

9.3DataRank · unranked

544 citations

Ilya Korsunsky, Jennifer L. Marshall, Anqi Gao, Gerald F. Watts, Triin Major +70 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases

Med(2022)10.1016/j.medj.2022.05.002

N/A

4.1DataRank · unranked

226 citations

Kevin Wei, Mathilde Pohin, Edy Y. Kim, Francesca Barone, Triin Major +30 more

52 Genetic Loci Influencing Myocardial Mass

Journal of the American College of Cardiology(2016)10.1016/j.jacc.2016.07.729

N/A

2.4DataRank · unranked

135 citations

Jessica van Setten, Niek Verweij, Georg Vogler, Matthew T. Maurano, Xinchen Wang +172 more

Repertoire analyses reveal T cell antigen receptor sequence features that influence T cell fate

Nature Immunology(2022)10.1038/s41590-022-01129-x

N/A

2.1DataRank · unranked

83 citations

Joyce B. Kang, Aparna Nathan, Kristen E. Pauken, A. Helena Jonsson, Deepak A. Rao +4 more

Genome-wide Study Identifies Association between HLA-B∗55:01 and Self-Reported Penicillin Allergy

The American Journal of Human Genetics(2020)10.1016/j.ajhg.2020.08.008

N/A

1.7DataRank · unranked

56 citations

Jonas Bovijn, Neil S. Zheng, Maarja Lepamets, Jenny C. Censin, Tuuli Jürgenson +64 more

Granzyme K activates the entire complement cascade

Nature(2025)10.1038/s41586-025-08713-9

N/A

1.5DataRank · unranked

118 citations

Erin Theisen, Fan Zhang, Aparna Nathan, Madison L. Fairfield, Karishma Vijay Rupani +89 more

TCR-sequencing in cancer and autoimmunity: barcodes and beyond

Trends in Immunology(2022)10.1016/j.it.2022.01.002

N/A

1.4DataRank · unranked

54 citations

Kaitlyn A. Lagattuta, Benjamin Y. Lu, Liliana E. Lucca, Adil Daud, David A. Hafler +4 more

Fast, sensitive and accurate integration of single-cell data with Harmony

Nature Methods(2019)10.1038/s41592-019-0619-0

N/A

1.4DataRank · unranked

10108 citations

Nghia Millard, Jean Fan, Kamil Slowikowski, Fan Zhang, Kevin Wei +6 more

The landscape of somatic copy-number alteration across human cancers

Nature(2010)10.1038/nature08822

N/A

1.2DataRank · unranked

4101 citations

Craig H. Mermel, Dale A. Porter, Guo Wei, Soumya Raychaudhuri, Jerry Donovan +61 more

Partitioning heritability by functional annotation using genome-wide association summary statistics

Nature Genetics(2015)10.1038/ng.3404

N/A

1.2DataRank · unranked

3020 citations

Hilary K. Finucane, Anders D. Børglum, The RACI Consortium, Brendan K Bulik-Sullivan, Alexander Gusev +22 more

Urine proteomic signatures of histological class, activity, chronicity, and treatment response in lupus nephritis

JCI Insight(2024)10.1172/jci.insight.172569

N/A

1.1DataRank · unranked

57 citations

Jill P. Buyon, Laurence S. Magder, Jeff Hodgin, Avi Z. Rosenberg, Dawit Demeke +29 more

Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types

Nature Communications(2024)10.1038/s41467-024-44742-0

N/A

1.1DataRank · unranked

44 citations

Buu Truong, Kushal K. Dey, Soumya Raychaudhuri, Sharon L. R. Kardia, Alkes L. Price +3 more

Adipocyte associated glucocorticoid signaling regulates normal fibroblast function which is lost in inflammatory arthritis

Nature Communications(2024)10.1038/s41467-024-52586-x

N/A

1.1DataRank · unranked

18 citations

Tan‐Yun Cheng, Ilya Korsunsky, Gerald F. Watts, Shani T. Gal-Oz, William V. Trim +94 more

Tissue-specific enhancer–gene maps from multimodal single-cell data identify causal disease alleles

Nature Genetics(2024)10.1038/s41588-024-01682-1

N/A

0.972DataRank · unranked

52 citations

Kathryn Weinand, Shakson Isaac, Kushal K. Dey, Karthik A. Jagadeesh, Masahiro Kanai +86 more

Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes

Science(2014)10.1126/science.1249547

N/A

0.948DataRank · unranked

556 citations

Sara Mostafavi, Chun Jimmie Ye, Mark N. Lee, Joseph M. Replogle, Ting Feng +22 more

Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration

Human Molecular Genetics(2011)10.1093/hmg/ddr270

N/A

0.832DataRank · unranked

256 citations

Jesen Fagerness, Stephan Ripke, Gudmar Thorleifsson, Perciliz L. Tan, Eric H. Souied +50 more

Deep immunophenotyping reveals circulating activated lymphocytes in individuals at risk for rheumatoid arthritis

Journal of Clinical Investigation(2025)10.1172/jci185217

N/A

0.717DataRank · unranked

31 citations

Joshua Keegan, Alec Griffith, Tusharkanti Ghosh, Alice Horisberger, Kaitlyn Howard +37 more

A high-resolution HLA reference panel capturing global population diversity enables multi-ethnic fine-mapping in HIV host response

medRxiv(2020)10.1101/2020.07.16.20155606

Top 28%

0.708DataRank

Top 28%15 citations

Masahiro Kanai, Wanson Choi, Xinyi Li, Kenichi Yamamoto, Kotaro Ogawa +24 more

Leveraging single-cell ATAC-seq to identify disease-critical fetal and adult brain cell types

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.20.445067

N/A

0.646DataRank · unranked

11 citations

Kushal K. Dey, Soumya Raychaudhuri, Sharon L. R. Kardia, Alkes L. Price, Karthik A. Jagadeesh +2 more

A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history

Journal of the American Medical Informatics Association(2022)10.1093/jamia/ocac008

Top 31%

0.643DataRank

Top 31%13 citations

Ilya Korsunsky, Soumya Raychaudhuri, Shawn N. Murphy, Jordan W. Smoller, Scott T. Weiss +9 more

Associations Between Rheumatoid Arthritis Clinical Factors and Synovial Cell Types and States

Arthritis & Rheumatology(2023)10.1002/art.42726

Top 32%

0.612DataRank

Top 32%14 citations

Fan Zhang, Laura T. Donlin, A. Helena Jonsson, William Apruzzese, Debbie Campbell +14 more

Immunosuppression causes dynamic changes in expression QTLs in psoriatic skin

Nature Communications(2023)10.1038/s41467-023-41984-2

N/A

0.612DataRank · unranked

12 citations

Joseph Mears, Aparna Nathan, Kazuyoshi Ishigaki, Yuriy Baglaenko, Noha Lim +8 more

Paired analysis of host and pathogen genomes identifies determinants of human tuberculosis

Nature Communications(2024)10.1038/s41467-024-54741-w

N/A

0.578DataRank · unranked

21 citations

Chuan‐Chin Huang, Nicole C. Howard, Xin Wang, Qingyun Liu, Xinyi Li +14 more

Blood immunophenotyping identifies distinct kidney histopathology and outcomes in patients with lupus nephritis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.14.575609

N/A

0.477DataRank · unranked

9 citations

Alec Griffith, Joshua Keegan, Arnon Arazi, John Pulford, Ekaterina Murzin +49 more

Multimodal memory T cell profiling identifies a reduction in a polyfunctional Th17 state associated with tuberculosis progression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.23.057828

N/A

0.391DataRank · unranked

7 citations

Jessica I. Beynor, Yuriy Baglaenko, Sara Suliman, Kazuyoshi Ishigaki, Samira Asgari +12 more

Deep immunophenotyping reveals circulating activated lymphocytes in individuals at risk for rheumatoid arthritis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.03.547507

N/A

0.380DataRank · unranked

8 citations

Joshua Keegan, Alec Griffith, Tusharkanti Ghosh, Alice Horisberger, Kaitlyn Howard +34 more

Genetics are not likely to offer clinically useful predictions for elevated liver enzyme levels in patients using low dose methotrexate

Seminars in Arthritis and Rheumatism(2022)10.1016/j.semarthrit.2022.152036

N/A

0.232DataRank · unranked

2 citations

Daniel I. Chasman, Soumya Raychaudhuri, Chang Xu, Paul M. Ridker, Daniel H. Solomon +2 more

Associations between rheumatoid arthritis clinical factors with synovial cell types and states

medRxiv(2023)10.1101/2023.04.27.23289104

Top 62%

0.228DataRank

Top 62%2 citations

Fan Zhang, Laura T. Donlin, A. Helena Jonsson, William Apruzzese, Debbie Campbell +12 more

Dynamic regulatory elements in single-cell multimodal data capture autoimmune disease heritability and implicate key immune cell states

medRxiv(2023)10.1101/2023.02.24.23286364

Top 65%

0.204DataRank

Top 65%2 citations

Kathryn Weinand, Aparna Nathan, Saori Sakaue, Accelerating Medicines Partnership RA/SLE Program and Network, Laura T. Donlin +5 more

Modeling memory T cell states at single-cell resolution identifies in vivo state-dependence of eQTLs influencing disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.29.454316

N/A

0DataRank · unranked

5 citations

Samira Asgari, Kazuyoshi Ishigaki, Tiffany Amariuta, Yang Luo, Jessica I. Beynor +8 more

Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.24.461597

N/A

0DataRank · unranked

4 citations

Kangcheng Hou, Kushal K. Dey, Saori Sakaue, Karthik A. Jagadeesh, Kathryn Weinand +10 more

Multi-ancestry genome-wide association analyses identify novel genetic mechanisms in rheumatoid arthritis

Nature Genetics(2022)10.1038/s41588-022-01213-w

N/A

0DataRank · unranked

354 citations

Saori Sakaue, Chikashi Terao, Yang Luo, Kyuto Sonehara, Kensuke Yamaguchi +86 more

Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data

Nature Genetics(2022)10.1038/s41588-022-01167-z

N/A

0DataRank · unranked

278 citations

Kangcheng Hou, Kushal K. Dey, Saori Sakaue, Karthik A. Jagadeesh, Kathryn Weinand +10 more

HLA autoimmune risk alleles restrict the hypervariable region of T cell receptors

Nature Genetics(2022)10.1038/s41588-022-01032-z

N/A

0DataRank · unranked

110 citations

Kaitlyn A. Lagattuta, Yang Luo, Eddie A. James, Jane H. Buckner, Soumya Raychaudhuri +1 more

High incidence of proliferative and membranous nephritis in SLE patients with low proteinuria in the Accelerating Medicines Partnership

Lara D. Veeken(2022)10.1093/rheumatology/keac067

N/A

0DataRank · unranked

32 citations

Jessica Li, Andrea Fava, Kristina Deonaraine, David Wofsy, Judith A. James +95 more

Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder

Nature Communications(2022)10.1038/s41467-022-30968-3

N/A

0DataRank · unranked

27 citations

Yingleong Chan, Pepper Dawes, Xiaoge Guo, Serkan Erdin, Derek J.C. Tai +15 more

Higher native Peruvian genetic ancestry proportion is associated with tuberculosis progression risk

Cell Genomics(2022)10.1016/j.xgen.2022.100151

N/A

0DataRank · unranked

22 citations

Yang Luo, Chuan-Chin Huang, Zibiao Zhang, Róger Calderón, Judith Jiménez +9 more

Rheumatoid Arthritis Synovial Inflammation Quantification Using Computer Vision

ACR Open Rheumatology(2022)10.1002/acr2.11381

N/A

0DataRank · unranked

7 citations

Bella Mehta, David Slater, James R. Thompson, Edward F. DiCarlo, Tania Pannellini +8 more

Cellular deconstruction of inflamed synovium defines diverse inflammatory phenotypes in rheumatoid arthritis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.25.481990

N/A

0DataRank · unranked

30 citations

A. Helena Jonsson, Aparna Nathan, Kevin Wei, Nghia Millard, Qian Xiao +80 more

Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles

medRxiv(2022)10.1101/2022.10.27.22281574

N/A

0DataRank · unranked

16 citations

Kathryn Weinand, Shakson Isaac, Kushal K. Dey, Karthik A. Jagadeesh, Masahiro Kanai +10 more

Iterative transcription factor screening enables rapid generation of microglia-like cells from human iPSC

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.03.494617

N/A

0DataRank · unranked

8 citations

Li Li, Fan Zhang, Björn van Sambeek, Evan Appleton, Alex H. M. Ng +13 more

A FLOT1 host regulatory allele is associated with a recently expanded Mtb clade in patients with tuberculosis

medRxiv(2022)10.1101/2022.02.07.22270622

N/A

0DataRank · unranked

5 citations

Chuan-Chin Huang, Qingyun Liu, Nicole C. Howard, Xinyi Li, Junhao Zhu +10 more

Immunosuppression causes dynamic changes in expression QTLs in psoriatic skin

medRxiv(2022)10.1101/2022.10.14.22281091

N/A

0DataRank · unranked

1 citations

Joseph Mears, Aparna Nathan, Kazuyoshi Ishigaki, Yuriy Baglaenko, Noha Lim +8 more

Type 2 Inflammation Drives an Airway Basal Stem Cell Program Through Insulin Receptor Substrate Signaling

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.13.512129

N/A

0DataRank · unranked

1 citations

Nils Hallen, Minkyu Lee, Sachin K. Samuchiwal, Qihua Ye, Kathleen M. Buchheit +13 more

Multi-population genome-wide association study implicates immune and non-immune factors in pediatric steroid-sensitive nephrotic syndrome

Nature Communications(2023)10.1038/s41467-023-37985-w

N/A

0DataRank · unranked

50 citations

Michelle T. McNulty, Xiaoyuan Jia, Yask Gupta, Hanna Dêbiec, Yang Luo +65 more

Methods and Insights from Single-Cell Expression Quantitative Trait Loci

Annual Review of Genomics and Human Genetics(2023)10.1146/annurev-genom-101422-100437

N/A

0DataRank · unranked

49 citations

Alessandro Raveane, Aparna Nathan, Nicole Soranzo, Soumya Raychaudhuri, Joyce B. Kang

Type 2 inflammation drives an airway basal stem cell program through insulin receptor substrate signaling

Journal of Allergy and Clinical Immunology(2023)10.1016/j.jaci.2023.01.030

N/A

0DataRank · unranked

44 citations

Nils Hallen, Minkyu Lee, Sachin K. Samuchiwal, Qihua Ye, Kathleen M. Buchheit +13 more

Tutorial: a statistical genetics guide to identifying HLA alleles driving complex disease

Nature Protocols(2023)10.1038/s41596-023-00853-4

N/A

0DataRank · unranked

44 citations

Saisriram Gurajala, Michelle Curtis, Yang Luo, Wanson Choi, Kazuyoshi Ishigaki +14 more

Dynamic regulatory elements in single-cell multimodal data implicate key immune cell states enriched for autoimmune disease heritability

Nature Genetics(2023)10.1038/s41588-023-01577-7

N/A

0DataRank · unranked

30 citations

Kathryn Weinand, Aparna Nathan, Saori Sakaue, Martin Jinye Zhang, Accelerating Medicines Partnership RA/SLE Program and Network +6 more

Identifying shared genetic architecture between rheumatoid arthritis and other conditions: a phenome-wide association study with genetic risk scores

EBioMedicine(2023)10.1016/j.ebiom.2023.104581

N/A

0DataRank · unranked

14 citations

Gregory C McDermott, Thany Seyok, Sicong Huang, Kumar Dahal, Sehi L’Yi +12 more

Identification of a regulatory pathway governing TRAF1 via an arthritis-associated non-coding variant

Cell Genomics(2023)10.1016/j.xgen.2023.100420

N/A

0DataRank · unranked

7 citations

Marta Martínez‐Bonet, Taehyeung Kim, Jeffrey A. Sparks, Kazuyoshi Ishigaki, Xiaoting Chen +21 more

Clonal associations of lymphocyte subsets and functional states revealed by single cell antigen receptor profiling of T and B cells in rheumatoid arthritis synovium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.18.533282

N/A

0DataRank · unranked

12 citations

Aaron B. Wagner, Nida Meednu, Fan Zhang, A. Helena Jonsson, Kevin Wei +19 more

The Chromatin Landscape of Pathogenic Transcriptional Cell States in Rheumatoid Arthritis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.07.536026

N/A

0DataRank · unranked

12 citations

Saori Sakaue, Aparna Nathan, A. Helena Jonsson, Fan Zhang, Gerald F. Watts +9 more

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

medRxiv(2023)10.1101/2023.03.14.23287257

N/A

0DataRank · unranked

10 citations

Amber Shen, Saori Sakaue, Yang Luo, Saisriram Gurajala, Aparna Nathan +23 more

High-dimensional phenotyping to define the genetic basis of cellular morphology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.09.522731

N/A

0DataRank · unranked

7 citations

Jatin Arora, Samira Asgari, Beth A. Cimini, Emily Peirent, Dhara Liyanage +12 more

The T cell receptor sequence influences the likelihood of T cell memory formation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.20.549939

N/A

0DataRank · unranked

5 citations

Aparna Nathan, Laurie Rumker, Michael E. Birnbaum, Soumya Raychaudhuri, Kaitlyn A. Lagattuta

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians

Andalucía Económica(2023)10.1101/2023.06.20.23291558

N/A

0DataRank · unranked

0 citations

Victor E. Nieto-Caballero, Samira Asgari, Kattya Lopez, Sarah K. Iwany, Yang Luo +14 more

Interferon subverts an AHR–JUN axis to promote CXCL13+ T cells in lupus

Nature(2024)10.1038/s41586-024-07627-2

N/A

0DataRank · unranked

84 citations

Vanessa Sue Wacleche, Ye Cao, Arundhati Pillai, John M. Sowerby, Brandon L. Hancock +95 more

Synovial fibroblast gene expression is associated with sensory nerve growth and pain in rheumatoid arthritis

Science Translational Medicine(2024)10.1126/scitranslmed.adk3506

N/A

0DataRank · unranked

68 citations

Nicholas Bartelo, Maryam Aslam, Elisabeth A. Murphy, Caryn Hale, Nathalie E. Blachère +69 more

Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium

Nature Communications(2024)10.1038/s41467-024-49186-0

N/A

0DataRank · unranked

55 citations

Aaron B. Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe +84 more

High-dimensional phenotyping to define the genetic basis of cellular morphology

Nature Communications(2024)10.1038/s41467-023-44045-w

N/A

0DataRank · unranked

53 citations

Jatin Arora, Samira Asgari, Beth A. Cimini, Ajay Nadig, Emily Peirent +14 more

The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis

Nature Communications(2024)10.1038/s41467-024-48620-7

N/A

0DataRank · unranked

39 citations

Saori Sakaue, Aparna Nathan, A. Helena Jonsson, Fan Zhang, Gerald F. Watts +82 more

Identifying genetic variants that influence the abundance of cell states in single-cell data

Nature Genetics(2024)10.1038/s41588-024-01909-1

N/A

0DataRank · unranked

18 citations

Saori Sakaue, Yakir Reshef, Joyce B. Kang, Seyhan Yazar, José Alquicira-Hernández +8 more

Non-coding autoimmune risk variant defines role for ICOS in T peripheral helper cell development

Nature Communications(2024)10.1038/s41467-024-46457-8

N/A

0DataRank · unranked

12 citations

Marta Martínez‐Bonet, Qiang Wang, Nicolaj Hackert, Jeffrey A. Sparks, Yuriy Baglaenko +13 more

The T cell receptor sequence influences the likelihood of T cell memory formation

Cell Reports(2024)10.1016/j.celrep.2024.115098

N/A

0DataRank · unranked

9 citations

Ayano C. Kohlgruber, Nouran S. Abdelfattah, Aparna Nathan, Laurie Rumker, Michael E. Birnbaum +3 more

Soluble urine activated leukocyte cell adhesion molecule is a strong predictor of lupus nephritis

Lara D. Veeken(2024)10.1093/rheumatology/keae559

N/A

0DataRank · unranked

8 citations

Noa Schwartz, Jeanette Ampudia, Joel M. Guthridge, Judith A. James, Jill P. Buyon +50 more

Human leukocyte antigen-DQA1*04:01 and rs2040406 variants are associated with elevated risk of childhood Burkitt lymphoma

Communications Biology(2024)10.1038/s42003-023-05701-5

N/A

0DataRank · unranked

4 citations

Yang Luo, Samuel Kirimunda, Murielle Verboom, Olusegun O. Onabajo, Mateus H. Gouveia +44 more

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians

PLoS Genetics(2024)10.1371/journal.pgen.1011313

N/A

0DataRank · unranked

4 citations

Josephine F. Reijneveld, Angel Ruvalcaba, Gabriel Innocenzi, Nalin Abeydeera, Samira Asgari +19 more

Reproducible single cell annotation of programs underlying T-cell subsets, activation states, and functions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.03.592310

N/A

0DataRank · unranked

18 citations

Michelle Curtis, Ryan Agnew, Kathryn Weinand, Aparna Nathan, Yuriy Baglaenko +5 more

Paired analysis of host and pathogen genomes identifies determinants of human tuberculosis

UNC Libraries(2024)10.17615/8w3a-kc10

N/A

0DataRank · unranked

0 citations

Soumya Raychaudhuri, Chuan‐Chin Huang, Xin Wang, D. Branch Moody, Róger Calderón +14 more

Iterative transcription factor screening enables rapid generation of microglia-like cells from human iPSC

Nature Communications(2025)10.1038/s41467-025-59596-3

N/A

0DataRank · unranked

13 citations

Li Li, Fan Zhang, Mariana García-Corral, Katharina Meyer, Patrick R.J. Fortuna +18 more

A human-mouse atlas of intrarenal myeloid cells identifies conserved disease-associated macrophages in lupus nephritis

The Journal of Experimental Medicine(2025)10.1084/jem.20241873

N/A

0DataRank · unranked

13 citations

Chirag Raparia, David Lieb, Yochay Tzur, Joyce B. Kang, Arnon Arazi +44 more

Blood immunophenotyping identifies distinct kidney histopathology and outcomes in patients with lupus nephritis

Journal of Clinical Investigation(2025)10.1172/jci181034

N/A

0DataRank · unranked

11 citations

Alec Griffith, Joshua M. Keegan, Arnon Arazi, John Pulford, Ekaterina Murzin +47 more

Modeling heterogeneity in single-cell perturbation states enhances detection of response eQTLs

Nature Genetics(2025)10.1038/s41588-025-02344-6

N/A

0DataRank · unranked

3 citations

Aparna Nathan, Joyce B. Kang, Laurie Rumker, Hyunsun Lee, Soumya Raychaudhuri +1 more

An Inflammatory and Quiescent HSC Subpopulation Expands with Age in Humans

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.01.673389

N/A

0DataRank · unranked

1 citations

Dylan Kotliar, Michelle Curtis, Jonathan Good, Chen Weng, Shawn David +6 more

TCR germline diversity reveals evidence of natural selection on variable and joining alpha chain genes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.20.671277

N/A

0DataRank · unranked

0 citations

Ali Akbari, Soumya Raychaudhuri, Sreekar Mantena

Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements

Nature Genetics(2020)10.1038/s41588-020-00740-8

N/A

0DataRank · unranked

213 citations

Kazuyoshi Ishigaki, Hiroki Sugishita, Tazro Ohta, Masaru Koido, Kushal K. Dey +7 more

RNA Identification of PRIME Cells Predicting Rheumatoid Arthritis Flares

New England Journal of Medicine(2020)10.1056/nejmoa2004114

N/A

0DataRank · unranked

208 citations

Vicky Yao, Kirsty Sawicka, John J. Fak, Mayu O. Frank, Salina Parveen +7 more

Integrated urine proteomics and renal single-cell genomics identify an IFN-γ response gradient in lupus nephritis

JCI Insight(2020)10.1172/jci.insight.138345

N/A

0DataRank · unranked

95 citations

Jill P. Buyon, Chandra Mohan, Ting Zhang, H. Michael Belmont, Peter Izmirly +16 more

CUX1 and IκBζ (NFKBIZ) mediate the synergistic inflammatory response to TNF and IL-17A in stromal fibroblasts

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1912702117

N/A

0DataRank · unranked

94 citations

Hung N. Nguyen, Erika H. Noss, Daimon P. Simmons, Fumitaka Mizoguchi, Gerald F. Watts +4 more

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Science Translational Medicine(2020)10.1126/scitranslmed.aay1548

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0DataRank · unranked

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.05.238360

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31 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.18.389189

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0DataRank · unranked

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.21.959510

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3 citations

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medRxiv(2020)10.1101/2020.07.29.20162552

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0DataRank · unranked

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0DataRank · unranked

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medRxiv(2020)10.1101/2020.03.13.20034348

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0DataRank · unranked

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Research Square(2020)10.21203/rs.3.rs-113869/v1

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0DataRank

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0DataRank · unranked

0 citations

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PMC(2020)10.17615/gvhn-9a16

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0 citations

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Arthritis & Rheumatology(2021)10.1002/art.42023

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0DataRank · unranked

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bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.11.426253

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medRxiv(2021)10.1101/2021.12.01.21267132

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0DataRank · unranked

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