Guy Baele

ORCID: 0000-0002-1915-7732

Also affiliated with KU Leuven

Biochemistry, Genetics and Molecular BiologyMedicineEarth and Planetary Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 56 papers. Top paper: “Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7”.

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Systematic Biology(2018)10.1093/sysbio/syy032

N/A

1.4DataRank · unranked

11020 citations

Alexei J. Drummond, Dong Xie, Guy Baele, Marc A. Suchard, Andrew Rambaut

Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST

Systematic Biology(2020)10.1093/sysbio/syaa037

N/A

1.0DataRank · unranked

21 citations

Mandev S. Gill, Paul Bastide, Philippe Lemey, Marc A. Suchard, Guy Baele

BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference

Nature Methods(2025)10.1038/s41592-025-02751-x

N/A

0.960DataRank · unranked

72 citations

Xiang Ji, Gabriel W. Hassler, John T. McCrone, Yucai Shao, Zhenyu Zhang +6 more

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

Nature Communications(2020)10.1038/s41467-020-18877-9

N/A

0.784DataRank · unranked

185 citations

Samuel L. Hong, Verity Hill, Guy Baele, Chiara Poletto, Vittoria Colizza +8 more

Gradients Do Grow on Trees: A Linear-TimeO(N)-Dimensional Gradient for Statistical Phylogenetics

Molecular Biology and Evolution(2020)10.1093/molbev/msaa130

N/A

0.736DataRank · unranked

43 citations

Zhenyu Zhang, Andrew J. Holbrook, Akihiko Nishimura, Guy Baele, Andrew Rambaut +3 more

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2007295117

N/A

0.665DataRank · unranked

83 citations

Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour +31 more

Data Integration in Bayesian Phylogenetics

Annual Review of Statistics and Its Application(2022)10.1146/annurev-statistics-033021-112532

N/A

0.625DataRank · unranked

18 citations

Andrew F. Magee, Zhenyu Zhang, Guy Baele, Philippe Lemey, Xiang Ji +3 more

SPREAD 4: online visualisation of pathogen phylogeographic reconstructions

Virus Evolution(2022)10.1093/ve/veac088

N/A

0.546DataRank · unranked

37 citations

Filip Bielejec, Juan Monetta, Simon Dellicour, Andrew Rambaut, Marc A. Suchard +3 more

Principled, practical, flexible, fast: A new approach to phylogenetic factor analysis

Methods in Ecology and Evolution(2022)10.1111/2041-210x.13920

N/A

0.470DataRank · unranked

22 citations

Brigida Gallone, Leandro Arístide, William L. Allen, Max R. Tolkoff, Andrew J. Holbrook +4 more

Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations

Systematic Biology(2024)10.1093/sysbio/syae019

N/A

0.345DataRank · unranked

9 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Frederick A. Matsen, Guy Baele +5 more

International importance and spread of SARS-CoV-2 variants Alpha, Delta, and Omicron BA.1 into Spain

Communications Medicine(2025)10.1038/s43856-025-00912-9

N/A

0.241DataRank · unranked

4 citations

Samuel L. Hong, Nena Bollen, Simon Dellicour, Guy Baele, Marc A. Suchard +3 more

Dispersal history of SARS‐CoV‐2 in Galicia, Spain

Journal of Medical Virology(2024)10.1002/jmv.29773

N/A

0.241DataRank · unranked

4 citations

Nuria Estévez‐Gómez, Loretta De Chiara, Pilar Alvariño, Pedro Miguel Juiz-González, Isabel Torres‐Beceiro +46 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Research Square(2021)10.21203/rs.3.rs-1159614/v1

N/A

0DataRank · unranked

5 citations

John T. McCrone, Verity Hill, Sumali Bajaj, Rosario Evans-Pena, Ben Lambert +35 more

Hunting alters viral transmission and evolution

Research Square(2021)10.21203/rs.3.rs-590207/v1

N/A

0DataRank · unranked

0 citations

Simona Kraberger, Roderick B. Gagne, Marie L. J. Gilbertson, Daryl R. Trumbo, Michael Charleston +12 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Nature(2022)10.1038/s41586-022-05200-3

N/A

0DataRank · unranked

143 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more

Accommodating sampling location uncertainty in continuous phylogeography

Virus Evolution(2022)10.1093/ve/veac041

N/A

0DataRank · unranked

15 citations

Philippe Lemey, Marc A. Suchard, Marius Gilbert, Guy Baele, Simon Dellicour

The phylodynamics of SARS-CoV-2 during 2020 in Finland

Communications Medicine(2022)10.1038/s43856-022-00130-7

N/A

0DataRank · unranked

14 citations

Ravi Kant, Frederik Van den Broeck, Maija T. Suvanto, Hussein Alburkat, Jenni Virtanen +22 more

Hunting alters viral transmission and evolution in a large carnivore

Nature Ecology & Evolution(2022)10.1038/s41559-021-01635-5

N/A

0DataRank · unranked

7 citations

Simona Kraberger, Roderick B. Gagne, Marie L. J. Gilbertson, Daryl R. Trumbo, Michael Charleston +12 more

Phycova — a tool for exploring covariates of pathogen spread

Virus Evolution(2022)10.1093/ve/veac015

N/A

0DataRank · unranked

6 citations

Guy Baele, Philippe Lemey, Simon Dellicour, Tim Blokker

Phylogeographic reconstruction of the emergence and spread of Powassan virus in the northeastern United States

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.14.512245

N/A

0DataRank · unranked

3 citations

Doug E. Brackney, Alan P. Dupuis, Rebecca M. Robich, Joseph R. Fauver, Anderson F. Brito +15 more

Multiple-trait subsampling for optimized ancestral trait reconstruction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.11.511762

N/A

0DataRank · unranked

0 citations

Nídia S. Trovão, Joel O. Wertheim, Guy Baele, Adriano de Bernardi Schneider, Xingguang Li

Dynamics of eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States

Current Biology(2023)10.1016/j.cub.2023.05.047

N/A

0DataRank · unranked

20 citations

Robert T. Koch, Sean Bialosuknia, Kiet Ngo, Steven D. Zink, Cheri A. Koetzner +23 more

Phylogeographic reconstruction of the emergence and spread of Powassan virus in the northeastern United States

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2218012120

N/A

0DataRank · unranked

36 citations

Doug E. Brackney, Alan P. Dupuis, Rebecca M. Robich, Joseph R. Fauver, Anderson F. Brito +15 more

Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City – from Alpha to Omicron

PLoS Pathogens(2023)10.1371/journal.ppat.1011348

N/A

0DataRank · unranked

22 citations

Samuel L. Hong, Verity Hill, Dacia Dimartino, Christian Marier, Paul Zappile +6 more

Newly identified lineages of porcine hemagglutinating encephalomyelitis virus exhibit respiratory phenotype

Virus Evolution(2023)10.1093/ve/vead051

N/A

0DataRank · unranked

18 citations

Dongyan Li, Guy Baele, Jin Zhao, Zhiwen Jiang, Xiang Ji +7 more

Shrinkage-based Random Local Clocks with Scalable Inference

Molecular Biology and Evolution(2023)10.1093/molbev/msad242

N/A

0DataRank · unranked

15 citations

Xiang Ji, Akihiko Nishimura, Guy Baele, Philippe Lemey, Marc A. Suchard +1 more

Delta-Omicron recombinant escapes therapeutic antibody neutralization

iScience(2023)10.1016/j.isci.2023.106075

N/A

0DataRank · unranked

12 citations

Hao Zhou, Takuya Tada, Dacia Dimartino, Christian Marier, Paul Zappile +17 more

Scalable Bayesian Divergence Time Estimation With Ratio Transformations

Systematic Biology(2023)10.1093/sysbio/syad039

N/A

0DataRank · unranked

12 citations

Alexander A. Fisher, Shuo Su, Jeffrey L. Thorne, Barney Potter, Philippe Lemey +3 more

Optimizing ancestral trait reconstruction of large HIV Subtype C datasets through multiple-trait subsampling

Virus Evolution(2023)10.1093/ve/vead069

N/A

0DataRank · unranked

5 citations

Nídia S. Trovão, Joel O. Wertheim, Guy Baele, Adriano de Bernardi Schneider, Xingguang Li

Dynamics of Eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States

medRxiv(2023)10.1101/2023.03.06.23286851

N/A

0DataRank · unranked

2 citations

Robert T. Koch, Sean Bialosuknia, Kiet Ngo, Steven D. Zink, Cheri A. Koetzner +23 more

Many-core algorithms for high-dimensional gradients on phylogenetic trees

arXiv (Cornell University)(2023)10.48550/arxiv.2303.04390

N/A

0DataRank · unranked

0 citations

Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen +2 more

Random-effects substitution models for phylogenetics via scalable gradient approximations

arXiv (Cornell University)(2023)10.48550/arxiv.2303.13642

N/A

0DataRank · unranked

0 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Fredrick A. Matsen, Guy Baele +5 more

Zoonotic infections by avian influenza virus: changing global epidemiology, investigation, and control

The Lancet Infectious Diseases(2024)10.1016/s1473-3099(24)00234-2

N/A

0DataRank · unranked

62 citations

Lifang Wang, Bowen Sun, Wenbo Wan, Xiang Ji, Guy Baele +14 more

Contemporary and historical human migration patterns shape hepatitis B virus diversity

Virus Evolution(2024)10.1093/ve/veae009

N/A

0DataRank · unranked

6 citations

Marijn Thijssen, Nídia S. Trovão, Andrea-Clemencia Pineda-Peña, Marijke Reynders, Thomas Mina +9 more

Many-core algorithms for high-dimensional gradients on phylogenetic trees

Bioinformatics(2024)10.1093/bioinformatics/btae030

N/A

0DataRank · unranked

8 citations

Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen +2 more

Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature

BMC Infectious Diseases(2024)10.1186/s12879-024-09967-w

N/A

0DataRank · unranked

2 citations

Johan Van Weyenbergh, Samuel L. Hong, Lize Cuypers, Áine O’Toole, Gytis Dudas +37 more

Dispersal history of SARS-CoV-2 in Galicia, Spain

medRxiv(2024)10.1101/2024.02.27.24303385

N/A

0DataRank · unranked

1 citations

Nuria Estévez‐Gómez, Loretta De Chiara, Pilar Alvariño, Pedro Miguel Juiz-González, Isabel Torres‐Beceiro +46 more

Hunting alters viral transmission and evolution

(2024)10.22541/au.170665695.51932090/v1

N/A

0DataRank · unranked

0 citations

Simona Kraberger, Roderick B. Gagne, Marie L. J. Gilbertson, Daryl R. Trumbo, Michael Charelston +12 more

Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation

arXiv (Cornell University)(2024)10.48550/arxiv.2412.06042

N/A

0DataRank · unranked

0 citations

Guy Baele, Marc A. Suchard, Philippe Lemey, Mandev S. Gill

Prevention and control of avian influenza virus: Recent advances in diagnostic technologies and surveillance strategies

Nature Communications(2025)10.1038/s41467-025-58882-4

N/A

0DataRank · unranked

22 citations

Zhiwen Jiang, Lifang Wang, Xiang Ji, Guy Baele, Ying Qin +6 more

HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X

Bioinformatics(2025)10.1093/bioinformatics/btaf488

N/A

0DataRank · unranked

14 citations

Luiz Max Carvalho, Marius Brusselmans, Gytis Dudas, Xiang Ji, John T. McCrone +4 more

Emergence of D1.1 reassortant H5N1 avian influenza viruses in North America

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.19.695329

N/A

0DataRank · unranked

7 citations

Nídia S. Trovão, Alexander Maksiaev, Guy Baele, Simon Dellicour, Martha I. Nelson +1 more

Biological causes and impacts of rugged tree landscapes in phylodynamic inference

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.10.657742

N/A

0DataRank · unranked

4 citations

Marius Brusselmans, Luiz Mariano Carvalho, Marc A. Suchard, Guy Baele, Frederick A. Matsen +1 more

Evidence of latency reshapes our understanding of Ebola virus reservoir dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.17.683141

N/A

0DataRank · unranked

3 citations

Guy Baele, Ifeanyi F. Omah, Eddy Kinganda-Lusamaki, Joseph A. Brew, Luiz Max Carvalho +6 more

Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation

Molecular Biology and Evolution(2025)10.1093/molbev/msaf199

N/A

0DataRank · unranked

0 citations

Guy Baele, Marc A. Suchard, Philippe Lemey, Mandev S. Gill

Genomic Epidemiology, Evolution, and Transmission Dynamics of Porcine Deltacoronavirus

Molecular Biology and Evolution(2020)10.1093/molbev/msaa117

N/A

0DataRank · unranked

180 citations

Xiang Ji, Wei He, Simon Dellicour, Shilei Wang, Gairu Li +13 more

Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations

Molecular Biology and Evolution(2020)10.1093/molbev/msaa163

N/A

0DataRank · unranked

157 citations

Philippe Lemey, Tanja Stadler, Simon Y. W. Ho, David A. Duchêne, Dhanasekaran Vijaykrishna +2 more

Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework

Wellcome Open Research(2020)10.12688/wellcomeopenres.15770.1

N/A

0DataRank · unranked

32 citations

Mandev S. Gill, Philippe Lemey, Marc A. Suchard, Guy Baele

Massive Parallelization Boosts Big Bayesian Multidimensional Scaling

Journal of Computational and Graphical Statistics(2020)10.1080/10618600.2020.1754226

N/A

0DataRank · unranked

2 citations

Philippe Lemey, Guy Baele, Simon Dellicour, Dirk Brockmann, Andrew Rambaut +2 more

Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction

Molecular Biology and Evolution(2020)10.1093/molbev/msaa047

N/A

0DataRank · unranked

1 citations

Philippe Lemey, Marc A. Suchard, Andrew Rambaut, Guy Baele, Mandev S. Gill

Snapshot of the evolution and mutation patterns of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.04.187435

N/A

0DataRank · unranked

26 citations

Jiumeng Sun, Wanting He, Xiang Ji, Qi Gao, Xiaofeng Zhai +7 more

Untangling introductions and persistence in COVID-19 resurgence in Europe

Nature(2021)10.1038/s41586-021-03754-2

N/A

0DataRank · unranked

213 citations

Nick Ruktanonchai, Samuel L. Hong, Vittoria Colizza, Chiara Poletto, Frederik Van den Broeck +12 more

Dispersal dynamics of SARS-CoV-2 lineages during the first epidemic wave in New York City

PLoS Pathogens(2021)10.1371/journal.ppat.1009571

N/A

0DataRank · unranked

45 citations

Samuel L. Hong, Bram Vrancken, Antoine Chaillon, Mandev S. Gill, Matthew T. Maurano +8 more

Bayesian Phylogeographic Analysis Incorporating Predictors and Individual Travel Histories in BEAST

Current Protocols(2021)10.1002/cpz1.98

N/A

0DataRank · unranked

27 citations

Philippe Lemey, Marc A. Suchard, Guy Baele, Samuel L. Hong

Global disparities in SARS-CoV-2 genomic surveillance

medRxiv(2021)10.1101/2021.08.21.21262393

N/A

0DataRank · unranked

124 citations

Elizaveta Semenova, Gytis Dudas, Gabriel W. Hassler, Chaney C. Kalinich, Moritz U. G. Kraemer +43 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

medRxiv(2021)10.1101/2021.12.14.21267606

N/A

0DataRank · unranked

17 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more