🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Alexander Lachmann

Regeneron (United States)

ORCID: 0000-0002-1982-7652

Also affiliated with Icahn School of Medicine at Mount Sinai

Biochemistry, Genetics and Molecular BiologyComputer ScienceDecision Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
24.0Author DataRank

Indexed papers

9in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 9 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Nucleic Acids Research(2016)10.1093/nar/gkw377
Top 1%
10.4DataRank
Top 1%11848 citations

Matthew R. Jones, Andrew D. Rouillard, Nicolas F. Fernandez, Qiaonan Duan, Zichen Wang +10 more

Papers

Driven by 22 papers — median percentile 77. Top paper: “Enrichr: a comprehensive gene set enrichment analysis web server 2016 update”.

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Nucleic Acids Research(2016)10.1093/nar/gkw377
Top 1%
10.4DataRank
Top 1%11848 citations

Matthew R. Jones, Andrew D. Rouillard, Nicolas F. Fernandez, Qiaonan Duan, Zichen Wang +10 more

Gene Set Knowledge Discovery with Enrichr

Current Protocols(2021)10.1002/cpz1.90
Top 3%
6.8DataRank
Top 3%3776 citations

Allison Bailey, Maxim V. Kuleshov, Daniel J. B. Clarke, John Erol Evangelista, Sherry L. Jenkins +7 more

DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules

BMC Bioinformatics(2022)10.1186/s12859-022-04590-5
Top 10%
2.1DataRank
Top 10%112 citations

Alexander Lachmann, Daniel J. B. Clarke, Zhuorui Xie, Kathleen M. Jagodnik, Avi Ma’ayan +1 more

SigCom LINCS: data and metadata search engine for a million gene expression signatures

Nucleic Acids Research(2022)10.1093/nar/gkac328
Top 11%
2.0DataRank
Top 11%115 citations

Daniel J. B. Clarke, Zhuorui Xie, Alexander Lachmann, Minji Jeon, Kerwin Chen +8 more

Getting Started with LINCS Datasets and Tools

Current Protocols(2022)10.1002/cpz1.487
Top 23%
0.885DataRank
Top 23%35 citations

Eryk Kropiwnicki, Megan L. Wojciechowicz, Kathleen M. Jagodnik, Ingrid Shu, Allison Bailey +10 more

KEA3: improved kinase enrichment analysis via data integration

Nucleic Acids Research(2021)10.1093/nar/gkab359
N/A
0.760DataRank · unranked
158 citations

Zhuorui Xie, Alexandra B. London, Janice Yang, John Erol Evangelista, Alexander Lachmann +4 more

lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs

Database(2023)10.1093/database/baad009
Top 29%
0.701DataRank
Top 29%19 citations

Megan L. Wojciechowicz, Daniel J. B. Clarke, Maxim V. Kuleshov, Zhuorui Xie, Minji Jeon +3 more

blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation

Bioinformatics(2022)10.1093/bioinformatics/btac076
N/A
0.578DataRank · unranked
46 citations

Zhuorui Xie, Avi Ma’ayan, Alexander Lachmann

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning

Database(2021)10.1093/database/baab017
N/A
0.542DataRank · unranked
36 citations

John Erol Evangelista, Daniel Stein, Daniel J. B. Clarke, Alexander Lachmann, Maxim V. Kuleshov +4 more

Getting Started with the IDG KMC Datasets and Tools

Current Protocols(2022)10.1002/cpz1.355
Top 38%
0.511DataRank
Top 38%12 citations

Jessica Binder, Jeremy J. Yang, Jayme Holmes, Alexander Lachmann, Daniel J. B. Clarke +7 more

RummaGEO: Automatic mining of human and mouse gene sets from GEO

Patterns(2024)10.1016/j.patter.2024.101072
Top 39%
0.491DataRank
Top 39%17 citations

Daniel J. B. Clarke, Alexander Lachmann, Eden Z. Deng, Avi Ma’ayan, Giacomo B. Marino

D2H2: diabetes data and hypothesis hub

Bioinformatics Advances(2023)10.1093/bioadv/vbad178
Top 66%
0.190DataRank
Top 66%2 citations

Nasheath Ahmed, Zhuorui Xie, Kathleen M. Jagodnik, Jason Han, Daniel J. B. Clarke +5 more

Playbook workflow builder: Interactive construction of bioinformatics workflows

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012901
N/A
0DataRank · unranked
5 citations

John Erol Evangelista, Zhuorui Xie, Giacomo B. Marino, Anna I. Byrd, Mano R Maurya +36 more

The COVID-19 Drug and Gene Set Library

Patterns(2020)10.1016/j.patter.2020.100090
N/A
0DataRank · unranked
85 citations

Daniel Stein, Daniel J. B. Clarke, Eryk Kropiwnicki, Kathleen M. Jagodnik, Alon Bartal +9 more

Memory of Divisional History Directs the Continuous Process of Primitive Hematopoietic Lineage Commitment

Stem Cell Reports(2020)10.1016/j.stemcr.2020.03.005
N/A
0DataRank · unranked
16 citations

Katrina Rapp, Michael G. Daniel, D. P. Shcherbinin, Ye Yuan, Andreia Gomes +7 more

Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses

Nature Biotechnology(2020)10.1038/s41587-020-0652-7
N/A
0DataRank · unranked
38 citations

David R. Simpson, Diana Murray, Evan Paull, Brennan Chu, Somnath Tagore +9 more

Interoperable RNA-Seq analysis in the cloud

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms(2020)10.1016/j.bbagrm.2020.194521
N/A
0DataRank · unranked
33 citations

Daniel J. B. Clarke, Denis Torre, Zhuorui Xie, Avi Ma’ayan, Alexander Lachmann

Systems Analysis Implicates WAVE2 Complex in the Pathogenesis of Developmental Left-Sided Obstructive Heart Defects

JACC Basic to Translational Science(2020)10.1016/j.jacbts.2020.01.012
N/A
0DataRank · unranked
28 citations

Andrew D. Rouillard, Nicolas Fernandez, Zichen Wang, Alexander Lachmann, Sunita S. Shankaran +21 more

EnrichrBot: Twitter bot tracking tweets about human genes

Bioinformatics(2020)10.1093/bioinformatics/btaa240
N/A
0DataRank · unranked
6 citations

Alexander Lachmann, Daniel J. B. Clarke, Allison H. Seiden, Kathleen M. Jagodnik, Avi Ma’ayan +1 more

Appyters: Turning Jupyter Notebooks into data-driven web apps

Patterns(2021)10.1016/j.patter.2021.100213
N/A
0DataRank · unranked
128 citations

Minji Jeon, Daniel Stein, Nicole Moiseyev, Eryk Kropiwnicki, Charles S. Dai +19 more

PrismExp: Predicting Human Gene Function by Partitioning Massive RNA-seq Co-expression Data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.20.427528
N/A
0DataRank · unranked
2 citations

Kaeli Rizzo, Alon Bartal, Minji Jeon, Daniel J. B. Clarke, Avi Ma’ayan +1 more

PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices

PeerJ(2023)10.7717/peerj.14927
N/A
0DataRank · unranked
12 citations

Kaeli Rizzo, Alon Bartal, Minji Jeon, Daniel J. B. Clarke, Avi Ma’ayan +1 more