🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Mireia Valles‐Colomer

Universitat Pompeu Fabra

ORCID: 0000-0002-1988-6054
Biochemistry, Genetics and Molecular BiologyMedicineEnvironmental ScienceNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.5Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Indice penale(2023)10.1038/s41587-023-01688-w
Top 4%
5.0DataRank
Top 4%1390 citations

Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo +21 more

Papers

Driven by 22 papers — median percentile 77. Top paper: “Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases”.

Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases

Nature Medicine(2022)10.1038/s41591-022-01964-3
N/A
7.4DataRank · unranked
362 citations

Michal Punčochář, Nicolai Karcher, Serena Porcari, Federica Armanini, Francesco Asnicar +18 more

The person-to-person transmission landscape of the gut and oral microbiomes

Nature(2023)10.1038/s41586-022-05620-1
N/A
6.8DataRank · unranked
464 citations

Aitor Blanco‐Míguez, Paolo Manghi, Francesco Asnicar, Léonard Dubois, Davide Golzato +38 more

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Indice penale(2023)10.1038/s41587-023-01688-w
Top 4%
5.0DataRank
Top 4%1390 citations

Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo +21 more

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

eLife(2021)10.7554/elife.65088
N/A
1.2DataRank · unranked
2354 citations

Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan +12 more

Key determinants of success in fecal microbiota transplantation: From microbiome to clinic

Cell Host & Microbe(2023)10.1016/j.chom.2023.03.020
N/A
0.858DataRank · unranked
304 citations

Nicolas Benech, Mireia Valles‐Colomer, Nicola Segata, Antonio Gasbarrini, Giovanni Cammarota +3 more

Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders

Nature Communications(2024)10.1038/s41467-024-53934-7
N/A
0.787DataRank · unranked
33 citations

Michele Filosi, Moreno Zolfo, Lucas G. Casten, Albert García-Valiente, Stefania Mattevi +18 more

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly

Genome biology(2021)10.1186/s13059-021-02427-7
N/A
0.762DataRank · unranked
160 citations

Eleonora Nigro, Michal Punčochář, Aitor Blanco‐Míguez, Matteo Ciciani, Paolo Manghi +12 more

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

Genome biology(2020)10.1186/s13059-020-02042-y
N/A
0.732DataRank · unranked
131 citations

Edoardo Pasolli, Francesco Asnicar, Kun D. Huang, Adrian Tett, Serena Manara +17 more

Microbial transmission in the social microbiome and host health and disease

Cell(2024)10.1016/j.cell.2023.12.014
N/A
0.722DataRank · unranked
122 citations

Cameron J.A. McInroy, Siobhán Harty, Aura Raulo, Neil G.O. Ibata, Mireia Valles‐Colomer +11 more

Cardiometabolic health, diet and the gut microbiome: a meta-omics perspective

Nature Medicine(2023)10.1038/s41591-023-02260-4
N/A
0.706DataRank · unranked
110 citations

Cristina Menni, Sarah Berry, Ana M. Valdes, Tim D. Spector, Nicola Segata +1 more

Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries

Cell(2024)10.1016/j.cell.2024.06.018
N/A
0.677DataRank · unranked
90 citations

Long H. Nguyen, Paolo Manghi, Hanseul Kim, Edoardo Pasolli, Sergio Andreu‐Sánchez +31 more

International consensus statement on microbiome testing in clinical practice

˜The œLancet. Gastroenterology & hepatology(2024)10.1016/s2468-1253(24)00311-x
N/A
0.657DataRank · unranked
79 citations

Benjamin H. Mullish, Francesco Asnicar, Siew C. Ng, Liping Zhao, Richard Hansen +64 more

Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts

Nature Microbiology(2024)10.1038/s41564-024-01858-9
N/A
0.648DataRank · unranked
74 citations

Amrisha Bhosle, Kai Wang, Roberta Marconi, Marta Selma‐Royo, Liviana Ricci +26 more

MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice

Cell Reports(2023)10.1016/j.celrep.2023.112464
N/A
0.581DataRank · unranked
47 citations

Aitor Blanco‐Míguez, Serena Manara, Amir Nabinejad, Fabio Cumbo, Francesco Beghini +19 more

Neuroblastoma is associated with alterations in gut microbiome composition subsequent to maternal microbial seeding

EBioMedicine(2023)10.1016/j.ebiom.2023.104917
N/A
0.521DataRank · unranked
13 citations

Paolo Manghi, Fabio Cumbo, Giulia Masetti, Federica Armanini, Francesco Asnicar +9 more

Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease

Nature Communications(2025)10.1038/s41467-025-66888-1
Top 41%
0.461DataRank
Top 41%17 citations

Giacomo Antonello, Lucas Schiffer, Davide Golzato, Andres Wokaty, Francesco Beghini +32 more

Treponema peruense sp. nov., a commensal spirochaete isolated from human faeces

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY(2021)10.1099/ijsem.0.005050
N/A
0DataRank · unranked
10 citations

Raúl Y. Tito, Rodrigo Bacigalupe, Mireia Valles‐Colomer, Samuel Chaffron, Marie Joossens +6 more

Paternal and induced gut microbiota seeding complement mother-to-infant transmission

Cell Host & Microbe(2024)10.1016/j.chom.2024.05.004
N/A
0DataRank · unranked
54 citations

Mireia Valles‐Colomer, Alise J. Ponsero, Otto Helve, Sture Andersson, Kaija-Leena Kolho +6 more

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.19.388223
N/A
0DataRank · unranked
145 citations

Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan +11 more

Global genetic diversity of human gut microbiome species is related to geographic location and host health

Cell(2025)10.1016/j.cell.2025.04.014
N/A
0DataRank · unranked
64 citations

Aitor Blanco‐Míguez, Daoming Wang, Davide Golzato, Paolo Manghi, Vitor Heidrich +9 more

A reconceptualized framework for human microbiome transmission in early life

Nature Communications(2025)10.1038/s41467-025-61998-2
N/A
0DataRank · unranked
3 citations

Justine Debelius, Mireia Valles‐Colomer, Hanna Theodora Noordzij, María Esteban-Torres, Alexandra Zhernakova +3 more

Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

Cell Host & Microbe(2023)10.1016/j.chom.2023.09.013
N/A
0DataRank · unranked
70 citations

Eric J. C. Gálvez, Edoardo Pasolli, Francesca De Filippis, Lena Amend, Kun D. Huang +20 more