Supriyo De

ORCID: 0000-0002-2075-7655

Also affiliated with Institute on Aging, National Institute on Aging

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 63 papers. Top paper: “Single-cell analysis of skeletal muscle macrophages reveals age-associated functional subpopulations”.

Single-cell analysis of skeletal muscle macrophages reveals age-associated functional subpopulations

eLife(2022)10.7554/elife.77974

N/A

2.4DataRank · unranked

98 citations

Papiya Chakraborty, Chang‐Yi Cui, Krystyna Mazan-Mamczarz, Christopher Dunn, Yulan Piao +12 more

Increased PTCHD4 expression via m6A modification of PTCHD4 mRNA promotes senescent cell survival

Nucleic Acids Research(2024)10.1093/nar/gkae322

N/A

0.689DataRank · unranked

19 citations

Nirad Banskota, Chang Hoon Shin, Carlos Anerillas, Dimitrios Tsitsipatis, Jen‐Hao Yang +12 more

Pleiotropic effects of BAFF on the senescence-associated secretome and growth arrest

eLife(2023)10.7554/elife.84238

N/A

0.643DataRank · unranked

18 citations

Carlos Anerillas, Maria Laura Idda, Rachel Munk, Chang Hoon Shin, Stefano Donegà +13 more

RNA-binding protein Nocte regulates Drosophila development by promoting translation reinitiation on mRNAs with long upstream open reading frames

Nucleic Acids Research(2023)10.1093/nar/gkad1122

N/A

0.342DataRank · unranked

6 citations

Yutong Xue, Shuaikun Su, Valerie Altouma, Katherine Ho, Jennifer L. Martindale +8 more

FUS-Mediated Inhibition of Myogenesis Elicited by Suppressing TNNT1 Production

Molecular and Cellular Biology(2024)10.1080/10985549.2024.2383296

N/A

0.175DataRank · unranked

2 citations

Poonam R. Pandey, Jennifer L. Martindale, Xiaoling Yang, Jen‐Hao Yang, Dimitrios Tsitsipatis +8 more

Interaction ofOIP5-AS1withMEF2CmRNA promotes myogenic gene expression

Nucleic Acids Research(2020)10.1093/nar/gkaa1151

N/A

0DataRank · unranked

41 citations

Ming‐Wen Chang, Poonam R. Pandey, Dimitrios Tsitsipatis, Xiaoling Yang, Jennifer L. Martindale +5 more

Skeletal muscle transcriptome in healthy aging

Nature Communications(2021)10.1038/s41467-021-22168-2

N/A

0DataRank · unranked

127 citations

Abhinav Harish, Gautam Kundu, Jen‐Hao Yang, Ceereena Ubaida‐Mohien, Marta González‐Freire +13 more

DNA methylation signatures reveal that distinct combinations of transcription factors specify human immune cell epigenetic identity

Immunity(2021)10.1016/j.immuni.2021.10.001

N/A

0DataRank · unranked

66 citations

Senthilkumar Ramamoorthy, Benjamin D. Shapiro, Mary Kaileh, Dena Hernández, Dimitra Sarantopoulou +25 more

Reduction of lamin B receptor levels by miR-340-5p disrupts chromatin, promotes cell senescence and enhances senolysis

Nucleic Acids Research(2021)10.1093/nar/gkab538

N/A

0DataRank · unranked

28 citations

Carlos Anerillas, Sophia C Harris, Rachel Munk, Jennifer L. Martindale, Xiaoling Yang +9 more

Systematic Identification of circRNAs in Alzheimer’s Disease

Genes(2021)10.3390/genes12081258

N/A

0DataRank · unranked

22 citations

Kirtana Veeraraghavan, Gautam Kundu, Krystyna Mazan-Mamczarz, Christopher Coletta, Madhav Thambisetty +3 more

SFPQ rescues F508del-CFTR expression and function in cystic fibrosis bronchial epithelial cells

Scientific Reports(2021)10.1038/s41598-021-96141-w

N/A

0DataRank · unranked

3 citations

Dharmendra Kumar Soni, Chaitali Sen, Mads Larsen, Krystyna Mazan-Mamczarz, Yulan Piao +5 more

A dual-activity Topoisomerase Complex Regulates both Transcription and Translation

Research Square(2021)10.21203/rs.3.rs-1054387/v1

N/A

0DataRank · unranked

1 citations

Yutong Xue, Alexei A. Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L. Martindale +9 more

SRC activation skews cell fate from apoptosis to senescence

Research Square(2021)10.21203/rs.3.rs-437609/v1

N/A

0DataRank · unranked

0 citations

Allison B. Herman, Martina Rossi, Rachel Munk, Elin Lehrmann, Jennifer L. Martindale +5 more

SFPQ Rescues F508del-CFTR Expression and Function in Cystic Fibrosis Bronchial Epithelial Cells

Research Square(2021)10.21203/rs.3.rs-429698/v1

N/A

0DataRank · unranked

0 citations

Dharmendra Kumar Soni, Chaitali Sen, Mads Larsen, Krystyna Mazan-Mamczarz, Yulan Piao +5 more

Early SRC activation skews cell fate from apoptosis to senescence

Science Advances(2022)10.1126/sciadv.abm0756

N/A

0DataRank · unranked

72 citations

Allison B. Herman, Martina Rossi, Rachel Munk, Elin Lehrmann, Jennifer L. Martindale +5 more

A dual-activity topoisomerase complex regulates mRNA translation and turnover

Nucleic Acids Research(2022)10.1093/nar/gkac538

N/A

0DataRank · unranked

27 citations

Yutong Xue, Alexei A. Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L. Martindale +10 more

A BDNF-TrkB autocrine loop enhances senescent cell viability

Nature Communications(2022)10.1038/s41467-022-33709-8

N/A

0DataRank · unranked

37 citations

Allison B. Herman, Rachel Munk, Amanda Garrido, Kwan-Wood Gabriel Lam, Matthew J. Payea +12 more

Single-Cell Analysis of the Transcriptome and Epigenome

Methods in molecular biology(2022)10.1007/978-1-0716-1831-8_3

N/A

0DataRank · unranked

23 citations

Jisu Ha, Supriyo De, Payel Sen, Krystyna Mazan-Mamczarz

LncRNA OIP5-AS1-directed miR-7 degradation promotes MYMX production during human myogenesis

Nucleic Acids Research(2022)10.1093/nar/gkac524

N/A

0DataRank · unranked

22 citations

Ming‐Wen Chang, Dimitrios Tsitsipatis, Xiaoling Yang, Jennifer L. Martindale, Rachel Munk +9 more

Enhanced myogenesis through lncFAM-mediated recruitment of HNRNPL to the MYBPC2 promoter

Nucleic Acids Research(2022)10.1093/nar/gkac1174

N/A

0DataRank · unranked

22 citations

Jen‐Hao Yang, Dimitrios Tsitsipatis, Xiaoling Yang, Jennifer L. Martindale, Rachel Munk +11 more

A BDNF-TrkB autocrine loop enhances senescent cell viability

Research Square(2022)10.21203/rs.3.rs-1263555/v1

N/A

0DataRank · unranked

3 citations

Allison B. Herman, Rachel Munk, Matthew J. Payea, Martina Rossi, Dimitrios Tsitsipatis +10 more

The YAP-TEAD complex promotes senescent cell survival by lowering endoplasmic reticulum stress

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.18.520921

N/A

0DataRank · unranked

2 citations

Krystyna Mazan-Mamczarz, Allison B. Herman, Rachel Munk, Kwan-Wood Gabriel Lam, Miguel Calvo‐Rubio +13 more

A dual-activity topoisomerase complex regulates translation and abundance of mRNAs important for psychiatric disorders

Research Square(2022)10.21203/rs.3.rs-1054387/v2

N/A

0DataRank · unranked

1 citations

Yutong Xue, Alexei A. Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L. Martindale +9 more

Pleiotropic effects of BAFF on the senescence-associated secretome and growth arrest

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.25.513730

N/A

0DataRank · unranked

0 citations

Carlos Anerillas, Maria Laura Idda, Rachel Munk, Chang Hoon Shin, Stefano Donegà +12 more

A hyper-quiescent chromatin state formed during aging is reversed by regeneration

Molecular Cell(2023)10.1016/j.molcel.2023.04.005

N/A

0DataRank · unranked

58 citations

James R. Occean, Daniël P. Melters, Changyou Shi, Lin Wang, Stephanie Stransky +13 more

The YAP–TEAD complex promotes senescent cell survival by lowering endoplasmic reticulum stress

Nature Aging(2023)10.1038/s43587-023-00480-4

N/A

0DataRank · unranked

72 citations

Krystyna Mazan-Mamczarz, Allison B. Herman, Rachel Munk, Kwan-Wood Gabriel Lam, Miguel Calvo‐Rubio +13 more

Single-cell transcriptomic analysis uncovers diverse and dynamic senescent cell populations

Aging(2023)10.18632/aging.204666

N/A

0DataRank · unranked

46 citations

Martina Rossi, Carlos Anerillas, Dimitrios Tsitsipatis, Yulan Piao, JINSHUI FAN +5 more

Transcriptomic and Proteomic of Gastrocnemius Muscle in Peripheral Artery Disease

Circulation Research(2023)10.1161/circresaha.122.322325

N/A

0DataRank · unranked

45 citations

Julián Candia, Ceereena Ubaida‐Mohien, Alexey E. Lyashkov, Nirad Banskota, Christiaan Leeuwenburgh +11 more

DPP4 inhibition impairs senohemostasis to improve plaque stability in atherosclerotic mice

Journal of Clinical Investigation(2023)10.1172/jci165933

N/A

0DataRank · unranked

43 citations

Dimitrios Tsitsipatis, Carlos Anerillas, Krystyna Mazan-Mamczarz, Angelica E. Carr, Jordan Gregg +23 more

NF-κB subunits direct kinetically distinct transcriptional cascades in antigen receptor-activated B cells

Nature Immunology(2023)10.1038/s41590-023-01561-7

N/A

0DataRank · unranked

38 citations

Prashant Chauhan, Cheryl A. Sherman‐Baust, Amit Singh, Mary Kaileh, Krystyna Mazan-Mamczarz +11 more

Surfaceome analysis of extracellular vesicles from senescent cells uncovers uptake repressor DPP4

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2219801120

N/A

0DataRank · unranked

36 citations

Chen Chen, Na Yang, Олеся Гололобова, Changyou Shi, Christopher Dunn +17 more

SARS-CoV-2 infection establishes a stable and age-independent CD8+ T cell response against a dominant nucleocapsid epitope using restricted T cell receptors

Nature Communications(2023)10.1038/s41467-023-42430-z

N/A

0DataRank · unranked

18 citations

Joseph Chen, Jiangyuan Li, D. Travis Gallagher, Jian Lü, Daichao Wu +33 more

Transcriptomes of human primary skin fibroblasts of healthy individuals reveal age‐associated mRNAs and long noncoding RNAs

Aging Cell(2023)10.1111/acel.13915

N/A

0DataRank · unranked

17 citations

Jennifer L. Martindale, Krystyna Mazan‐Mamczarz, Allison B. Herman, Yulan Piao, Nirad Banskota +18 more

A dual-activity topoisomerase complex promotes both transcriptional activation and repression in response to starvation

Nucleic Acids Research(2023)10.1093/nar/gkad086

N/A

0DataRank · unranked

13 citations

Yutong Xue, Seung Kyu Lee, Yongqing Zhang, JINSHUI FAN, Supriyo De +3 more

Cerebrospinal fluid exploratory proteomics and ketamine metabolite pharmacokinetics in human volunteers after ketamine infusion

iScience(2023)10.1016/j.isci.2023.108527

N/A

0DataRank · unranked

11 citations

Cristan Farmer, Mani Yavi, Bashkim Kadriu, Min Zhu, JINSHUI FAN +13 more

Lysine methyltransferase Kmt2d regulates naive CD8+ T cell activation-induced survival

Frontiers in Immunology(2023)10.3389/fimmu.2022.1095140

N/A

0DataRank · unranked

8 citations

Thomas Nguyen, Jeffrey Cifello, Raheel Ahmad, Yongqing Zhang, Qian Yang +8 more

Transcription factor TFII-I fine tunes innate properties of B lymphocytes

Frontiers in Immunology(2023)10.3389/fimmu.2023.1067459

N/A

0DataRank · unranked

6 citations

Mary Kaileh, Supriyo De, Krystyna Mazan-Mamczarz, Dashzeveg Bayarsaihan, Ranjan Sen +2 more

A hyper-quiescent chromatin state formed during aging is reversed by regeneration

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.14.528512

N/A

0DataRank · unranked

4 citations

James R. Occean, Daniël P. Melters, Changyou Shi, Lin Wang, Stephanie Stransky +13 more

Gene body DNA hydroxymethylation restricts the magnitude of transcriptional changes during aging

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.15.528714

N/A

0DataRank · unranked

2 citations

Na Yang, Yan Sun, Marshall S. Dawkins, Rachel Munk, Cédric Belair +17 more

Single-cell and spatial transcriptomics uncovers the role of senescent vascular cells in pathological arterial remodeling during atherosclerosis

Research Square(2023)10.21203/rs.3.rs-3235572/v1

N/A

0DataRank · unranked

2 citations

Dimitrios Tsitsipatis, Angelica E. Carr, Bennett G. Childs, Carla Rocha dos Santos, Carlos Anerillas +17 more

The YAP-TEAD complex promotes senescent cell survival by lowering endoplasmic reticulum stress

Research Square(2023)10.21203/rs.3.rs-2451188/v1

N/A

0DataRank · unranked

1 citations

Krystyna Mazan-Mamczarz, Allison B. Herman, Rachel Munk, Kwan-Wood Gabriel Lam, Miguel Calvo‐Rubio +13 more

E-proteins set the threshold for optimal TCF1 expression during αβ T cell development

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.06.565822

N/A

0DataRank · unranked

0 citations

Bridget Aylward, Fei Ma, Cheryl A. Sherman‐Baust, Laura B. Chopp, Susan A. Shinton +14 more

Gene body DNA hydroxymethylation restricts the magnitude of transcriptional changes during aging

Nature Communications(2024)10.1038/s41467-024-50725-y

N/A

0DataRank · unranked

23 citations

Na Yang, Yan Sun, Marshall S. Dawkins, Rachel Munk, Cédric Belair +17 more

Identification of senescent cell subpopulations by CITE‐seq analysis

Aging Cell(2024)10.1111/acel.14297

N/A

0DataRank · unranked

10 citations

Krystyna Mazan‐Mamczarz, Rachel Munk, Dimitrios Tsitsipatis, Qiong Meng, Martina Rossi +10 more

Skeletal Muscle mRNA Splicing Variants Association With Four Different Fitness and Energetic Measures in the GESTALT Study

Journal of Cachexia Sarcopenia and Muscle(2024)10.1002/jcsm.13603

N/A

0DataRank · unranked

9 citations

Nirad Banskota, Esha Gupta, Marta González‐Freire, Ann Zenobia Moore, Ceereena Ubaida‐Mohien +19 more

SUMOylation controls Hu antigen R posttranscriptional activity in liver cancer

Cell Reports(2024)10.1016/j.celrep.2024.113924

N/A

0DataRank · unranked

7 citations

Claudia M. Rejano-Gordillo, Jorge Simón, Fernando Lopitz‐Otsoa, Teresa C. Delgado, Krystyna Mazan-Mamczarz +40 more

Homeodomain-only protein suppresses proliferation and contributes to differentiation- and age-related reduced CD8+ T cell expansion

Frontiers in Immunology(2024)10.3389/fimmu.2024.1360229

N/A

0DataRank · unranked

1 citations

Michael S. Patrick, Jian Lü, Joseph Chen, Yongqing Zhang, Humza Hemani +4 more

Characterization of age-associated gene expression changes in mouse sweat glands

Aging(2024)10.18632/aging.205776

N/A

0DataRank · unranked

0 citations

Chang‐Yi Cui, Dimitrios Tsitsipatis, Yulan Piao, JINSHUI FAN, Krystyna Mazan-Mamczarz +5 more

Spatial transcriptomics of the aging mouse brain reveals origins of inflammation in the white matter

Nature Communications(2025)10.1038/s41467-025-58466-2

N/A

0DataRank · unranked

27 citations

Chang-Yi Cui, Christopher T. Lee, Monica Bodogai, Na Yang, Changyou Shi +16 more

Single-cell and spatial transcriptomics map senescent vascular cells in arterial remodeling during atherosclerosis in mice

Nature Aging(2025)10.1038/s43587-025-00889-z

N/A

0DataRank · unranked

25 citations

Dimitrios Tsitsipatis, Bennett G. Childs, Angelica E. Carr, Carla Rocha dos Santos, Carlos Anerillas +20 more

Healthy Aging Metabolomic and Proteomic Signatures Across Multiple Physiological Compartments

Aging Cell(2025)10.1111/acel.70014

N/A

0DataRank · unranked

10 citations

Julián Candia, Ceereena Ubaida‐Mohien, Toshiko Tanaka, Ann Zenobia Moore, Min Zhu +13 more

Topoisomerase 3b facilitates piRNA biogenesis to promote transposon silencing and germ cell development

Cell Reports(2025)10.1016/j.celrep.2025.115495

N/A

0DataRank · unranked

4 citations

Weiping Shen, William Wen, Yuyoung Joo, Yutong Xue, Aaron Park +12 more

Integrated omics reveals disease-associated radial glia-like cells with epigenetically dysregulated interferon response in multiple sclerosis

Neuron(2025)10.1016/j.neuron.2025.09.022

N/A

0DataRank · unranked

4 citations

Alexandra M. Nicaise, Dimitrios Tsitsipatis, Liviu Pirvan, Daniel Žucha, Andi Munteanu +27 more

Enhancer Rewiring Orchestrates Inflammation and Loss of Cell Identity During Muscle Stem Cell Aging

Aging Cell(2025)10.1111/acel.70289

N/A

0DataRank · unranked

4 citations

Na Yang, Evelyn Pizano, Lin Wang, James R. Occean, Chang‐Yi Cui +13 more

Comprehensive Overview of Computational Tools for Alternative Splicing Analysis

Wiley Interdisciplinary Reviews - RNA(2025)10.1002/wrna.70030

N/A

0DataRank · unranked

4 citations

Nirad Banskota, Myriam Gorospe, Supriyo De, Hieu V. Tran

Genome‐wide transcriptome differences associated with perceived discrimination in an urban, community‐dwelling middle‐aged cohort

The FASEB Journal(2025)10.1096/fj.202402000r

N/A

0DataRank · unranked

3 citations

Nicole Noren Hooten, Sharon F. Wu, Maame Mensah‐Bonsu, Yongqing Zhang, Kumaraswamy Naidu Chitrala +7 more

In-vitro human myogenesis model reveals novel mRNA alternative splicing isoforms

Scientific Reports(2025)10.1038/s41598-025-16523-2

N/A

0DataRank · unranked

1 citations

Nirad Banskota, Jen‐Hao Yang, Martina Rossi, Yulan Piao, Dimitrios Tsitsipatis +7 more

circSamd4 represses myogenic transcriptional activity of PUR proteins

Nucleic Acids Research(2020)10.1093/nar/gkaa035

N/A

0DataRank · unranked

110 citations

Jen‐Hao Yang, Dimitrios Tsitsipatis, Amaresh C. Panda, Ji Heon Noh, Kyoung Mi Kim +14 more

Pig Taste Cell-derived Organoids Synthesize Insulin

Endocrinology(2025)10.1210/endocr/bqaf126

N/A

0DataRank · unranked

1 citations

Caio Henrique Mazucanti, Qin Yao, Jennifer O’Connell, Nandita Vegesna, Dimitrios Tsitsipatis +9 more

AUF1 ligand circPCNX reduces cell proliferation by competing with p21 mRNA to increase p21 production

Nucleic Acids Research(2020)10.1093/nar/gkaa1246

N/A

0DataRank · unranked

80 citations

Ioannis Grammatikakis, Riley K. Driscoll, Xiaoling Yang, Kotb Abdelmohsen, Sophia C Harris +10 more

Mitochondrial RNA in Alzheimer’s Disease Circulating Extracellular Vesicles

Frontiers in Cell and Developmental Biology(2020)10.3389/fcell.2020.581882

N/A

0DataRank · unranked

74 citations

Qiong Meng, Olivia Perez de, Maja Mustapić, Aiwu Cheng, Erden Eren +12 more

Altered 3D chromatin structure permits inversional recombination at the IgH locus

Science Advances(2020)10.1126/sciadv.aaz8850

N/A

0DataRank · unranked

22 citations

Fei Ma, Mingming Zhao, Yaqiang Cao, Lillian Shipp, Angela Liu +12 more

Survey of the Arc Epigenetic Landscape in Normal Cognitive Aging

Molecular Neurobiology(2020)10.1007/s12035-020-01915-4

N/A

0DataRank · unranked

15 citations

Joshua T. Kittleson, Supriyo De, Bonnie R. Fletcher, James F. Castellano, Gautam Kundu +3 more