Benjamin P. Berman

ORCID: 0000-0002-2099-9005

Also affiliated with Alphatec Spine Approach Technologies (United States), Volition (United States), Volition (United Kingdom)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

10.5Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Papers

Driven by 19 papers — median percentile 96. Top paper: “Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome”.

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

Proceedings of the National Academy of Sciences(2002)10.1073/pnas.231608898

N/A

17.3DataRank · unranked

617 citations

Yutaka Nibu, Barret D. Pfeiffer, Pavel Tomancak, Susan E. Celniker, Michael Levine +3 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Integrated genomic analyses of ovarian carcinoma

Nature(2011)10.1038/nature10166

N/A

1.3DataRank · unranked

8094 citations

Debra Bell, Andrew Berchuck, Michael J. Birrer, Jeremy Chien, D. W. Cramer +268 more

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Cell Reports(2021)10.1016/j.celrep.2021.108707

N/A

1.1DataRank · unranked

32 citations

Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago C. Silva +77 more

The PsychENCODE project

Nature Neuroscience(2015)10.1038/nn.4156

N/A

0.927DataRank · unranked

483 citations

Chunyu Liu, James A. Knowles, Flora M. Vaccarino, Philip L. De Jager, Gregory E. Crawford +87 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes

Nature Communications(2021)10.1038/s41467-021-22720-0

N/A

0DataRank · unranked

54 citations

Guowei Huang, Tiago C. Silva, Qian Yang, Yan‐Yi Jiang, H. Phillip Koeffler +3 more

Mechanistic and therapeutic distinctions between cardiosphere-derived cell and mesenchymal stem cell extracellular vesicle non-coding RNA

Scientific Reports(2021)10.1038/s41598-021-87939-9

N/A

0DataRank · unranked

22 citations

Sasha Smolgovsky, Liang Li, Lauren S. Kelly, Travis J. Antes, Kiel Peck +8 more

DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers

Journal of Experimental & Clinical Cancer Research(2022)10.1186/s13046-022-02440-z

N/A

0DataRank · unranked

19 citations

Michelle R. Jones, Pei-Chen Peng, Simon G. Coetzee, Tiago C. Silva, Jasmine Plummer +16 more

DNA Methylation and Transcriptomic Features are Preserved Throughout Disease Recurrence and Chemoresistance in High Grade Serous Ovarian Cancers

Research Square(2022)10.21203/rs.3.rs-1214611/v1

N/A

0DataRank · unranked

2 citations

Michell Jones, Pei-Chen Peng, Simon G. Coetzee, Tiago Almeida Silva, Jasmine Plummer +16 more

Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.504390

N/A

0DataRank · unranked

2 citations

Benjamin Ziman, Allen S. Ho, Uttam K. Sinha, Li-Yan Xu, En‐Min Li +4 more

BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies

Nucleic Acids Research(2024)10.1093/nar/gkae097

N/A

0DataRank · unranked

44 citations

Benjamin K. Johnson, Jacob Morrison, Ian Beddows, James Eapen, Efrat Katsman +8 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

Lineage-Specific Epigenomic and Genomic Activation of Oncogene HNF4A Promotes Gastrointestinal Adenocarcinomas

Cancer Research(2020)10.1158/0008-5472.can-20-0390

N/A

0DataRank · unranked

65 citations

Tiago C. Silva, Nicole Gull, Qian Yang, Jasmine Plummer, Stephanie Chen +15 more

Ovarian Cancer Risk Variants Are Enriched in Histotype-Specific Enhancers and Disrupt Transcription Factor Binding Sites

The American Journal of Human Genetics(2020)10.1016/j.ajhg.2020.08.021

N/A

0DataRank · unranked

27 citations

Pei-Chen Peng, Simon G. Coetzee, Jonathan P. Tyrer, Alberto Luiz P. Reyes, Rosario I. Corona +14 more

StateHub-StatePaintR: rapid and reproducible chromatin state evaluation for custom genome annotation

F1000Research(2020)10.12688/f1000research.13535.2

N/A

0DataRank · unranked

5 citations

Zachary Ramjan, Huy Q. Dinh, Benjamin P. Berman, Dennis J. Hazelett, Simon G. Coetzee

A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb targets

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.04.134858

N/A

0DataRank · unranked

0 citations

Guowei Huang, Tiago C. Silva, Qian Yang, H. Phillip Koeffler, Benjamin P. Berman +2 more

Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin

UNC Libraries(2020)10.17615/3e2x-wy62

N/A

0DataRank · unranked

0 citations

David A. Wheeler, Zhong Chen, Lynda Chin, Todd Pihl, Tai Hsien Ou Yang +95 more

Benjamin P. Berman

Indexed papers

Top data-sharing exemplar

Papers