Ronald R. Breaker

Also affiliated with Yale University, Institut thématique Génétique, génomique et bioinformatique, Institute of Molecular Biology and Biophysics

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes”.

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

Genome Research(2011)10.1101/gr.112516.110

N/A

4.0DataRank · unranked

124 citations

Ida Moltke, Adam Roth, Stefan Washietl, Jiayu Wen, Sharon L. R. Kardia +4 more

Witnessing the structural evolution of an RNA enzyme

eLife(2021)10.7554/elife.71557

N/A

1.3DataRank · unranked

25 citations

Yu-Ting Huang, Ronald R. Breaker, David P. Horning, Gerald F. Joyce, Xavier Portillo

A second riboswitch class for the enzyme cofactor NAD+

RNA(2020)10.1261/rna.077891.120

N/A

0DataRank · unranked

38 citations

Lukas Corey, Sarah N. Malkowski, Gadareth Higgs, Ronald R. Breaker, S. Panchapakesan

A bacterial riboswitch class senses xanthine and uric acid to regulate genes associated with purine oxidation

RNA(2020)10.1261/rna.075218.120

N/A

0DataRank · unranked

28 citations

Ronald R. Breaker, Diane Yu

A rare bacterial RNA motif is implicated in the regulation of thepurFgene whose encoded enzyme synthesizes phosphoribosylamine

RNA(2020)10.1261/rna.077313.120

N/A

0DataRank · unranked

6 citations

Ruben M. Atilho, Etienne B. Greenlee, Christina E. Weinberg, Ronald R. Breaker, Sarah N. Malkowski

Biochemical Validation of a Fourth Guanidine Riboswitch Class in Bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.21.349134

N/A

0DataRank · unranked

3 citations

Aparaajita Balaji, Diane Yu, Adam Roth, Ronald R. Breaker, Hubert Salvail

Natural circularly permuted group II introns in bacteria produce RNA circles

iScience(2021)10.1016/j.isci.2021.103431

N/A

0DataRank · unranked

21 citations

Zasha Weinberg, Koen Vanderschuren, Mitchell H. Murdock, Ronald R. Breaker, Adam Roth

DIMPL: a bioinformatics pipeline for the discovery of structured noncoding RNA motifs in bacteria

Bioinformatics(2021)10.1093/bioinformatics/btab624

N/A

0DataRank · unranked

3 citations

Glenn J Gaffield, Malavika Puri, Ronald R. Breaker, Kenneth I. Brewer

Witnessing the structural evolution of an RNA enzyme

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.22.449496

N/A

0DataRank · unranked

1 citations

Yu‐Ting Huang, Ronald R. Breaker, David P. Horning, Gerald F. Joyce, Xavier Portillo

Discovering riboswitches: the past and the future

Trends in Biochemical Sciences(2022)10.1016/j.tibs.2022.08.009

N/A

0DataRank · unranked

260 citations

Ronald R. Breaker, Kumari Kavita

Na+ riboswitches regulate genes for diverse physiological processes in bacteria

Nature Chemical Biology(2022)10.1038/s41589-022-01086-4

N/A

0DataRank · unranked

33 citations

Harini Sadeeshkumar, Anna Sun, Narasimhan Sudarsan, Ronald R. Breaker, Neil A. White

Ornate, large, extremophilic (OLE) RNA forms a kink turn necessary for OapC protein recognition and RNA function

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.102674

N/A

0DataRank · unranked

9 citations

Kimberly A. Harris, Nicole B. Odzer, Sarah G. Wilkins, Ronald R. Breaker, Seth E. Lyon

Riboswitches

Current Biology(2023)10.1016/j.cub.2023.03.069

N/A

0DataRank · unranked

64 citations

Ronald R. Breaker, Hubert Salvail

Exploiting natural riboswitches for aptamer engineering and validation

Nucleic Acids Research(2023)10.1093/nar/gkac1218

N/A

0DataRank · unranked

52 citations

Matthew K. Midy, Aparaajita Balaji, Ronald R. Breaker, Michael G. Mohsen

A spermidine riboswitch class in bacteria exploits a close variant of an aptamer for the enzyme cofactor S-adenosylmethionine

Cell Reports(2023)10.1016/j.celrep.2023.113571

N/A

0DataRank · unranked

13 citations

Aparaajita Balaji, Adam Roth, Ronald R. Breaker, Hubert Salvail

8-oxoguanine riboswitches in bacteria detect and respond to oxidative DNA damage

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2307854120

N/A

0DataRank · unranked

12 citations

Kumari Kavita, S. Panchapakesan, Adam Roth, Ronald R. Breaker, Siddhartha Hamal Dhakal

Screening for small molecule inhibitors of SAH nucleosidase using an SAH riboswitch

Analytical Biochemistry(2023)10.1016/j.ab.2023.115047

N/A

0DataRank · unranked

9 citations

Aparaajita Balaji, Alan G. Sutherland, Saraspadee Mootien, Karen Anthony, Ronald R. Breaker +1 more

A conserved uORF in the ilvBNC mRNA of Corynebacterium species regulates ilv operon expression

Microbial Genomics(2023)10.1099/mgen.0.001019

N/A

0DataRank · unranked

3 citations

Kumari Kavita, S. Panchapakesan, Megan E. Fris, Ronald R. Breaker, Aya Narunsky

The discovery of novel noncoding RNAs in 50 bacterial genomes

Nucleic Acids Research(2024)10.1093/nar/gkae248

N/A

0DataRank · unranked

18 citations

Gadareth Higgs, Blake M Torres, Diane Yu, Gabriel Belem de Andrade, Kumari Kavita +2 more

Engineered Branaplam Aptamers Exploit Structural Elements from Natural Riboswitches

ACS Chemical Biology(2024)10.1021/acschembio.4c00358

N/A

0DataRank · unranked

2 citations

Matthew K. Midy, Aparaajita Balaji, Ronald R. Breaker, Michael G. Mohsen

Former orphan riboswitches reveal unexplored areas of bacterial metabolism, signaling, and gene control processes

RNA(2020)10.1261/rna.074997.120

N/A

0DataRank · unranked

45 citations

Ronald R. Breaker, Madeline E. Sherlock