Joshua M. Stuart

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “A community effort to create standards for evaluating tumor subclonal reconstruction”.

A community effort to create standards for evaluating tumor subclonal reconstruction

Nature Biotechnology(2020)10.1038/s41587-019-0364-z

N/A

2.8DataRank · unranked

100 citations

Adriana Salcedo, Maxime Tarabichi, Shadrielle M. G. Espiritu, Amit G. Deshwar, Matei David +28 more

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Cell Reports(2021)10.1016/j.celrep.2021.108707

N/A

1.1DataRank · unranked

32 citations

Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago C. Silva +77 more

Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

Cancer Cell(2025)10.1016/j.ccell.2024.12.002

N/A

0.803DataRank · unranked

29 citations

Christopher K. Wong, Christina Yau, Mauro A.A. Castro, Jordan Lee, Brian Karlberg +24 more

Inferring causal molecular networks: empirical assessment through a community-based effort

UNC Libraries(2020)10.17615/j5nb-5n89

N/A

0DataRank · unranked

0 citations

Steven M. Hill, Daoud Meerzaman, Venkateshan Kannan, Bahman Afsari, Takeshi Hase +95 more

Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin

UNC Libraries(2020)10.17615/3e2x-wy62

N/A

0DataRank · unranked

0 citations

David A. Wheeler, Zhong Chen, Lynda Chin, Todd Pihl, Tai Hsien Ou Yang +95 more

VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics

Nature Communications(2021)10.1038/s41467-021-26017-0

N/A

0DataRank · unranked

110 citations

Ioannis N. Anastopoulos, Hongxu Ding, Joshua M. Stuart, Lucas Seninge

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Cell Systems(2021)10.1016/j.cels.2021.05.021

N/A

0DataRank · unranked

42 citations

David Haan, Kristen D. Dang, Kami Chiotti, Matthew Inkman, Andrew Lamb +32 more

Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures

Nature Communications(2021)10.1038/s41467-021-26929-x

N/A

0DataRank · unranked

10 citations

Ioannis N. Anastopoulos, Andrew D. Bailey, Joshua M. Stuart, Benedict Paten, Hongxu Ding

A Spatiotemporal and Machine-Learning Platform Accelerates the Manufacturing of hPSC-derived Esophageal Mucosa

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.24.563664

N/A

0DataRank · unranked

1 citations

Carmel Grace McCullough, Lucas Seninge, Lihao Guo, Woo-Joo Kwon, Yongchun Zhang +12 more

A spatiotemporal and machine-learning platform facilitates the manufacturing of hPSC-derived esophageal mucosa

Developmental Cell(2025)10.1016/j.devcel.2024.12.030

N/A

0DataRank · unranked

6 citations

Carmel Grace McCullough, Lucas Seninge, Lihao Guo, Woo-Joo Kwon, Yongchun Zhang +12 more

Transcriptional profiling clarifies a program of enzalutamide extreme non-response in lethal prostate cancer

npj Precision Oncology(2025)10.1038/s41698-025-01002-8

N/A

0DataRank · unranked

1 citations

Ya‐Mei Hu, Joel A. Yates, Chao Zhang, Eva S. Rodansky, Dhruv Khokhani +26 more

Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods

STAR Protocols(2025)10.1016/j.xpro.2025.103681

N/A

0DataRank · unranked

0 citations

Victor H Apolonio, Vinicius S Chagas, Christopher K. Wong, Jordan Lee, Christina Yau +61 more

Protocol for obtaining cancer type and subtype predictions using subSCOPE

STAR Protocols(2025)10.1016/j.xpro.2025.103705

N/A

0DataRank · unranked

0 citations

A. Gordon Robertson, Kyle Ellrott, Christopher K. Wong, Jordan Lee, Christina Yau +54 more

Modeling Human TBX5 Haploinsufficiency Predicts Regulatory Networks for Congenital Heart Disease

Developmental Cell(2020)10.1016/j.devcel.2020.11.020

N/A

0DataRank · unranked

130 citations

Kavitha S. Rao, Giovanni Iacono, W. Patrick Devine, Andrew P. Blair, Swetansu K. Hota +22 more

Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

UNC Libraries(2025)10.17615/jwhb-3p36

N/A

0DataRank · unranked

0 citations

Anab Kemal, Mauro A.A. Castro, Christina Yau, Andrew D. Cherniack, Ina Felau +25 more

Towards Inferring Nanopore Sequencing Ionic Currents from Nucleotide Chemical Structures

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.30.404947

N/A

0DataRank · unranked

2 citations

Ioannis N. Anastopoulos, Andrew D. Bailey, Joshua M. Stuart, Benedict Paten, Hongxu Ding

Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma

UNC Libraries(2020)10.17615/np0d-4636

N/A

0DataRank · unranked

0 citations

Manaswi Gupta, Anouk van Berkel, Jessica Marquard, Tobias Else, Ian T. Fiddes +95 more