Nir Hacohen

Also affiliated with Harvard University, Cambridge Hospital, Massachusetts General Hospital, Center for Cancer Research

MedicineImmunology and MicrobiologyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

18.5Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An atlas of healthy and injured cell states and niches in the human kidney

Nature(2023)10.1038/s41586-023-05769-3

Top 5%

4.4DataRank

Top 5%663 citations

Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira, Kian Kalhor +95 more

Papers

Driven by 159 papers — median percentile 91. Top paper: “Viral epitope profiling of COVID-19 patients reveals cross-reactivity and correlates of severity”.

Viral epitope profiling of COVID-19 patients reveals cross-reactivity and correlates of severity

Science(2020)10.1126/science.abd4250

N/A

14.5DataRank · unranked

769 citations

Eric Fujimura, Tomasz Kula, Richard T. Timms, I‐Hsiu Lee, Yumei Leng +95 more

COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

Nature(2021)10.1038/s41586-021-03570-8

N/A

10.7DataRank · unranked

879 citations

Carly G.K. Ziegler, Graham Heimberg, Rachelly Normand, Yiming Yang, Åsa Segerstolpe +95 more

An immune-cell signature of bacterial sepsis

Nature Medicine(2020)10.1038/s41591-020-0752-4

N/A

10.2DataRank · unranked

519 citations

Michael R. Filbin, Roby P. Bhattacharyya, Kianna Billman, Thomas Eisenhaure, Deborah T. Hung +6 more

Notch signalling drives synovial fibroblast identity and arthritis pathology

Nature(2020)10.1038/s41586-020-2222-z

N/A

9.3DataRank · unranked

544 citations

Ilya Korsunsky, Jennifer L. Marshall, Anqi Gao, Gerald F. Watts, Triin Major +70 more

Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection

Nature Communications(2020)10.1038/s41467-020-20139-7

N/A

8.5DataRank · unranked

268 citations

Azfar Neyaz, Annamária Szabolcs, Angela Shih, Jonathan Chen, Vishal Thapar +28 more

Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100287

N/A

7.8DataRank · unranked

311 citations

Arnav Mehta, Alexis M. Schneider, Kyle R. Kays, Jamey Guess, Matteo Gentili +38 more

Genome-wide enhancer maps link risk variants to disease genes

Nature(2021)10.1038/s41586-021-03446-x

N/A

7.7DataRank · unranked

764 citations

Drew T. Bergman, Charles P. Fulco, Philine Guckelberger, Benjamin R. Doughty, Tejal A. Patwardhan +27 more

The Lipogenic Regulator SREBP2 Induces Transferrin in Circulating Melanoma Cells and Suppresses Ferroptosis

Cancer Discovery(2020)10.1158/2159-8290.cd-19-1500

N/A

6.3DataRank · unranked

231 citations

Whijae Roh, Ryan J. Sullivan, Keith H.K. Wong, Ben S. Wittner, Hongshan Guo +24 more

Combined PD-1, BRAF and MEK inhibition in BRAFV600E colorectal cancer: a phase 2 trial

Nature Medicine(2023)10.1038/s41591-022-02181-8

N/A

4.9DataRank · unranked

192 citations

Jonathan Chen, Sherry Chao, Karin Pelka, Marios Giannakis, Julian M. Hess +40 more

Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma

Nature Medicine(2021)10.1038/s41591-020-01206-4

N/A

4.5DataRank · unranked

525 citations

Donna Leet, Rosa Lundbye Allesøe, Giacomo Oliveira, Shuqiang Li, Adrienne Luoma +36 more

An atlas of healthy and injured cell states and niches in the human kidney

Nature(2023)10.1038/s41586-023-05769-3

Top 5%

4.4DataRank

Top 5%663 citations

Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira, Kian Kalhor +95 more

SARS-CoV-2 viremia is associated with distinct proteomic pathways and predicts COVID-19 outcomes

Journal of Clinical Investigation(2021)10.1172/jci148635

N/A

4.2DataRank · unranked

122 citations

Alexis M. Schneider, Arnav Mehta, Moshe Sade-Feldman, Kyle R. Kays, Matteo Gentili +25 more

Genomic and transcriptomic analysis of checkpoint blockade response in advanced non-small cell lung cancer

Nature Genetics(2023)10.1038/s41588-023-01355-5

Top 6%

4.0DataRank

Top 6%188 citations

Matthew D. Hellmann, Monica Arniella, Mark Holton, Samuel S. Freeman, Vivek Naranbhai +37 more

Targeting TBK1 to overcome resistance to cancer immunotherapy

Nature(2023)10.1038/s41586-023-05704-6

N/A

4.0DataRank · unranked

171 citations

Or‐Yam Revach, Seth Anderson, Emily Kessler, Clara Wolfe, Anne Jenney +54 more

High-throughput RNA isoform sequencing using programmed cDNA concatenation

Nature Biotechnology(2023)10.1038/s41587-023-01815-7

N/A

3.9DataRank · unranked

181 citations

Jonathan T. Smith, Kiran Garimella, Mehrtash Babadi, Victoria Popic, Moshe Sade-Feldman +14 more

Dictionary of immune responses to cytokines at single-cell resolution

Nature(2023)10.1038/s41586-023-06816-9

Top 6%

3.8DataRank

Top 6%349 citations

Teddy Huang, Shuqiang Li, Aileen Ma, Jorge L. Pérez, Chris Sander +5 more

Differentiation of exhausted CD8+ T cells after termination of chronic antigen stimulation stops short of achieving functional T cell memory

Nature Immunology(2021)10.1038/s41590-021-00982-6

N/A

3.3DataRank · unranked

117 citations

David Wolski, Sonu Subudhi, Jihad Aljabban, Ruben C. Hoogeveen, Marcos Damasio +25 more

Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells*

Molecular & Cellular Proteomics(2019)10.1074/mcp.ra118.001259

N/A

3.2DataRank · unranked

120 citations

Andrew Rhoads, Alexandra R. Cocco, Ryan Peckner, Adam L. Haber, Lawrence D. Schweitzer +8 more

ESCRT-dependent STING degradation inhibits steady-state and cGAMP-induced signalling

Nature Communications(2023)10.1038/s41467-023-36132-9

N/A

3.2DataRank · unranked

128 citations

Bingxu Liu, Malvina Papanastasiou, Deborah Dele‐Oni, Marc A. Schwartz, Rebecca J. Carlson +7 more

Low protease activity in B cell follicles promotes retention of intact antigens after immunization

Science(2023)10.1126/science.abn8934

N/A

2.7DataRank · unranked

97 citations

Ang Cui, Laura Maiorino, Ava P. Amini, Justin R. Gregory, Maurice Bukenya +21 more

ImmVar project: Insights and design considerations for future studies of “healthy” immune variation

Seminars in Immunology(2015)10.1016/j.smim.2015.03.003

Top 9%

2.5DataRank

Top 9%67 citations

Nir Hacohen, Diane Mathis, Prisca Liberali, Barbara E. Stranger, Christophe Benoıst +1 more

GeNets: a unified web platform for network-based genomic analyses

Nature Methods(2018)10.1038/s41592-018-0039-6

N/A

2.4DataRank · unranked

63 citations

April Kim, Joseph Rosenbluh, Heiko Horn, Liraz Greenfeld, David An +21 more

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

Genome Research(2018)10.1101/gr.240390.118

N/A

2.3DataRank · unranked

78 citations

Jenny Chen, Rachel E. Gate, Meena Subramaniam, Tushar Bhangale, Mark N. Lee +18 more

Plasma proteomics reveals tissue-specific cell death and mediators of cell-cell interactions in severe COVID-19 patients

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.02.365536

N/A

2.2DataRank · unranked

49 citations

Arnav Mehta, Alexis M. Schneider, Kyle R. Kays, Jamey Guess, Matteo Gentili +38 more

The Human Cell Atlas White Paper

arXiv (Cornell University)(2018)10.17863/cam.40032

Top 10%

2.2DataRank

Top 10%41 citations

Sarah A. Teichmann, Orit Rozenblatt‐Rosen, Michael J. T. Stubbington, Kristin G. Ardlie, Ido Amit +76 more

Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features

Nature Communications(2020)10.1038/s41467-020-15022-4

N/A

2.0DataRank · unranked

81 citations

Carl G. de Boer, Charles P. Fulco, Caleb A. Lareau, Masahiro Kanai, Jacob C. Ulirsch +12 more

Longitudinal characterization of circulating neutrophils uncovers phenotypes associated with severity in hospitalized COVID-19 patients

Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100779

N/A

1.7DataRank · unranked

70 citations

Anna Gonye, Samuel S. Freeman, Paulina Kapłonek, Irena Gushterova, Kyle R. Kays +27 more

A unique subset of glycolytic tumour-propagating cells drives squamous cell carcinoma

Nature Metabolism(2021)10.1038/s42255-021-00350-6

N/A

1.7DataRank · unranked

48 citations

Carlos Sebastián, Christina M. Ferrer, Caroline A. Lewis, Moshe Sade-Feldman, Thomas J. LaSalle +19 more

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.945840

N/A

1.7DataRank · unranked

45 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +22 more

Landscape of X chromosome inactivation across human tissues

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/073957

N/A

1.6DataRank · unranked

52 citations

Angela Yen, Manuel A. Rivas, Jamie L. Marshall, Rahul Satija, Laura Gauthier +17 more

The aged tumor microenvironment limits T cell control of cancer

Nature Immunology(2024)10.1038/s41590-024-01828-7

N/A

1.5DataRank · unranked

95 citations

Sneha Jaiswal, Daniela Martínez, Cansu Yerinde, Keely Ji, Velita Miranda +9 more

SLAMF6 deficiency augments tumor killing and skews toward an effector phenotype revealing it as a novel T cell checkpoint

eLife(2020)10.7554/elife.52539

N/A

1.5DataRank · unranked

41 citations

Galit Eisenberg, Shiri Klein, Shoshana Frankenburg, Sharon Merims, Inna Ben David +11 more

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Nature Biotechnology(2011)10.1038/nbt.1883

N/A

1.5DataRank · unranked

22458 citations

Brian J. Haas, Moran Yassour, Joshua Z. Levin, Ido Amit, Xian Adiconis +19 more

Single-cell atlas of the liver myeloid compartment before and after cure of chronic viral hepatitis

Journal of Hepatology(2023)10.1016/j.jhep.2023.02.040

N/A

1.5DataRank · unranked

45 citations

Bo Li, Michael S. Wallace, Anna Gonye, Christopher Oetheimer, Hailey Patel +26 more

MAUDE: inferring expression changes in sorting-based CRISPR screens

Genome Biology(2020)10.1186/s13059-020-02046-8

N/A

1.3DataRank · unranked

37 citations

John P. Ray, Nir Hacohen, Prisca Liberali, John Ray, Carl G. de Boer

B cells and tertiary lymphoid structures promote immunotherapy response

Nature(2020)10.1038/s41586-019-1922-8

N/A

1.2DataRank · unranked

2719 citations

Sangeetha M. Reddy, Jianjun Gao, Shaojun Zhang, Rafet Başar, Rohit Thakur +55 more

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

Science(2017)10.1126/science.aah4573

N/A

1.2DataRank · unranked

2459 citations

Rahul Satija, Gary Reynolds, Siranush Sarkizova, Karthik Shekhar, James Fletcher +19 more

CRISPR-Cas9 Knockin Mice for Genome Editing and Cancer Modeling

Cell(2014)10.1016/j.cell.2014.09.014

N/A

1.1DataRank · unranked

2034 citations

Sidi Chen, Yang Zhou, Michael J. Yim, Lukasz Swiech, Hannah R. Kempton +17 more

Urine proteomic signatures of histological class, activity, chronicity, and treatment response in lupus nephritis

JCI Insight(2024)10.1172/jci.insight.172569

N/A

1.1DataRank · unranked

57 citations

Jill P. Buyon, Laurence S. Magder, Jeff Hodgin, Avi Z. Rosenberg, Dawit Demeke +29 more

Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial

Nature(2018)10.1038/s41586-018-0792-9

N/A

1.1DataRank · unranked

1412 citations

Jing Sun, Itay Tirosh, Nathan D. Mathewson, Shuqiang Li, Giacomo Oliveira +51 more

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

Nature(2013)10.1038/nature12172

N/A

1.1DataRank · unranked

1301 citations

Rahul Satija, Xian Adiconis, Rona S. Gertner, Jellert T. Gaublomme, Raktima Raychowdhury +14 more

Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites

Cell Reports(2014)10.1016/j.celrep.2014.05.048

N/A

1.1DataRank · unranked

1246 citations

Maxwell R. Mumbach, Marko Jovanovic, Timothy Wang, Karolina Maciag, G. Guy Bushkin +16 more

An Integrative Framework Reveals Signaling-to-Transcription Events in Toll-like Receptor Signaling

Cell Reports(2017)10.1016/j.celrep.2017.06.016

N/A

1.1DataRank · unranked

31 citations

Dariusz Przybylski, Nir Yosef, Jana W Qiao, Raktima Raychowdhury, Tanja Maritzen +10 more

Spatially organized multicellular immune hubs in human colorectal cancer

Cell(2021)10.1016/j.cell.2021.08.003

N/A

1.0DataRank · unranked

787 citations

Matan Hofree, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji, Alborz Bejnood +73 more

Combined tumor and immune signals from genomes or transcriptomes predict outcomes of checkpoint inhibition in melanoma

Cell Reports Medicine(2022)10.1016/j.xcrm.2021.100500

N/A

0.972DataRank · unranked

35 citations

Moshe Sade-Feldman, Jaegil Kim, Chip Stewart, Anna Gonye, Arvind Ravi +34 more

A Physical and Regulatory Map of Host-Influenza Interactions Reveals Pathways in H1N1 Infection

Cell(2009)10.1016/j.cell.2009.12.018

N/A

0.954DataRank · unranked

576 citations

Irit Gat-Viks, Bennett O.V. Shum, Amelie Dricot, Marciela M. de Grace, Liguo Wu +12 more

Phenotype, specificity and avidity of antitumour CD8+ T cells in melanoma

Nature(2021)10.1038/s41586-021-03704-y

N/A

0.951DataRank · unranked

566 citations

Kari Stromhaug, Susan Klaeger, Tomasz Kula, Dennie T. Frederick, Phuong M. Le +21 more

Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes

Science(2014)10.1126/science.1249547

N/A

0.948DataRank · unranked

556 citations

Sara Mostafavi, Chun Jimmie Ye, Mark N. Lee, Joseph M. Replogle, Ting Feng +22 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.508492

N/A

0.946DataRank · unranked

16 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Induction of a regulatory myeloid program in bacterial sepsis and severe COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.02.280180

N/A

0.938DataRank · unranked

16 citations

Michael R. Filbin, Roby P. Bhattacharyya, Abraham Sonny, Arnav Mehta, Kianna Billman +14 more

Dynamic profiling of the protein life cycle in response to pathogens

Science(2015)10.1126/science.1259038

N/A

0.926DataRank · unranked

478 citations

Michael S. Rooney, Philipp Mertins, Dariusz Przybylski, Nicolas Chevrier, Rahul Satija +15 more

A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks

Cell(2015)10.1016/j.cell.2015.06.059

N/A

0.918DataRank · unranked

455 citations

Marko Jovanovic, Rebecca H. Herbst, Atray Dixit, Chun Jimmie Ye, Dariusz Przybylski +13 more

Automated Flow Synthesis of Tumor Neoantigen Peptides for Personalized Immunotherapy

Scientific Reports(2020)10.1038/s41598-019-56943-5

N/A

0.912DataRank · unranked

32 citations

Rebecca L. Holden, Binyou Wang, Pu‐Guang Chen, Stephanie Hanna, Zhuting Hu +9 more

Erratum: Corrigendum: Landscape of X chromosome inactivation across human tissues

Nature(2018)10.1038/nature25993

N/A

0.905DataRank · unranked

15 citations

Angela Yen, Manuel A. Rivas, Jamie L. Marshall, Rahul Satija, Laura Gauthier +17 more

Parsing the Interferon Transcriptional Network and Its Disease Associations

Cell(2016)10.1016/j.cell.2015.12.032

N/A

0.877DataRank · unranked

345 citations

Hideyuki Yoshida, Devapregasan Moodley, Hugo LeBoité, Katherine Rothamel, Towfique Raj +17 more

Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods

Nature Biotechnology(2020)10.1038/s41587-020-0534-z

N/A

0.875DataRank · unranked

16 citations

Xian Adiconis, Sean K. Simmons, Monika S. Kowalczyk, Cynthia C. Hession, Nemanja Despot Marjanovic +17 more

Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps

Cell(2021)10.1016/j.cell.2021.11.031

N/A

0.871DataRank · unranked

332 citations

Cherie’ R. Scurrah, Eliot T. McKinley, Alan J. Simmons, Marisol A. Ramirez-Solano, Xiangzhu Zhu +48 more

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

Nature Biotechnology(2020)10.1038/s41587-020-0645-6

N/A

0.860DataRank · unranked

307 citations

Leif S. Ludwig, Christoph Muus, Satyen H. Gohil, Tongtong Zhao, Zachary Chiang +15 more

Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer

Nature Biotechnology(2021)10.1038/s41587-021-01021-3

N/A

0.853DataRank · unranked

294 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +24 more

The commitment of the human cell atlas to humanity

Nature Communications(2024)10.1038/s41467-024-54306-x

Top 24%

0.847DataRank

Top 24%20 citations

Kristin G. Ardlie, Fabiana Arzuaga, Gordon A. Awandare, Samirkumar B. Amin, Alexander Bernier +38 more

Early cross-coronavirus reactive signatures of protective humoral immunity against COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.11.443609

N/A

0.843DataRank · unranked

16 citations

Chuangqi Wang, Yannic C. Bartsch, Stephanie Fischinger, Matthew J. Gorman, Kathryn Bowman +19 more

Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

Nature Methods(2020)10.1038/s41592-020-0905-x

N/A

0.837DataRank · unranked

264 citations

Joshua Gould, Yiming Yang, Siranush Sarkizova, Marcin Tabaka, Orr Ashenberg +9 more

Intersection of population variation and autoimmunity genetics in human T cell activation

Science(2014)10.1126/science.1254665

N/A

0.837DataRank · unranked

264 citations

Ting Feng, Ho-Keun Kwon, Towfique Raj, Michael T. Wilson, Natasha Asinovski +14 more

Systematically characterizing the roles of E3-ligase family members in inflammatory responses with massively parallel Perturb-seq

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.23.525198

N/A

0.836DataRank · unranked

23 citations

Basak Eraslan, Olena Kuksenko, Kushal K. Dey, Karthik A. Jagadeesh, Pratiksha I. Thakore +18 more

Systematic Discovery of TLR Signaling Components Delineates Viral-Sensing Circuits

Cell(2011)10.1016/j.cell.2011.10.022

N/A

0.781DataRank · unranked

182 citations

Philipp Mertins, Maxim N. Artyomov, Alex K. Shalek, Matteo Iannacone, Mark F. Ciaccio +21 more

Nanowire-Mediated Delivery Enables Functional Interrogation of Primary Immune Cells: Application to the Analysis of Chronic Lymphocytic Leukemia

Nano Letters(2012)10.1021/nl3042917

N/A

0.776DataRank · unranked

175 citations

Jellert T. Gaublomme, Lili Wang, Nir Yosef, Nicolas Chevrier, Mette S. Andersen +12 more

Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs

Cell(2021)10.1016/j.cell.2021.05.046

N/A

0.768DataRank · unranked

166 citations

Susan Klaeger, Siranush Sarkizova, Leah R. Pearlman, Da‐Yuan Chen, Kathleen Gallagher +53 more

Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker

JCI Insight(2020)10.1172/jci.insight.133267

N/A

0.767DataRank · unranked

165 citations

Edgar A. Otto, Paul Hoover, Sean Eddy, Laura H. Mariani, Bradley Godfrey +18 more

Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro

Nature Immunology(2023)10.1038/s41590-023-01558-2

N/A

0.759DataRank · unranked

157 citations

Martine Therrien, Saša Jereb, Tushar Kamath, Vahid Gazestani, Trevor Atkeson +19 more

Deep immunophenotyping reveals circulating activated lymphocytes in individuals at risk for rheumatoid arthritis

Journal of Clinical Investigation(2025)10.1172/jci185217

N/A

0.717DataRank · unranked

31 citations

Joshua Keegan, Alec Griffith, Tusharkanti Ghosh, Alice Horisberger, Kaitlyn Howard +37 more

Plasma from patients with bacterial sepsis or severe COVID-19 induces suppressive myeloid cell production from hematopoietic progenitors in vitro

Science Translational Medicine(2021)10.1126/scitranslmed.abe9599

N/A

0.701DataRank · unranked

106 citations

Michael R. Filbin, Roby P. Bhattacharyya, Abraham Sonny, Arnav Mehta, Kianna Billman +13 more

Author response: The Human Cell Atlas

(2017)10.7554/elife.27041.011

Top 29%

0.700DataRank

Top 29%14 citations

Sarah A. Teichmann, Matthew E. Hurles, Ido Amit, Kerstin Lindblad‐Toh, Bernd Bodenmiller +60 more

SARS-CoV-2 Viremia is Associated with Distinct Proteomic Pathways and Predicts COVID-19 Outcomes

medRxiv(2021)10.1101/2021.02.24.21252357

N/A

0.700DataRank · unranked

10 citations

Alexis M. Schneider, Arnav Mehta, Moshe Sade-Feldman, Kyle R. Kays, Matteo Gentili +25 more

Epitope spreading toward wild-type melanocyte-lineage antigens rescues suboptimal immune checkpoint blockade responses

Science Translational Medicine(2021)10.1126/scitranslmed.abd8636

N/A

0.691DataRank · unranked

99 citations

Masayoshi Kawakubo, Vikram R. Juneja, Mack Y. Su, Tal Hadad Erlich, Martin W. LaFleur +32 more

Precision Medicine in Nephrology: An Integrative Framework of Multidimensional Data in the Kidney Precision Medicine Project

American Journal of Kidney Diseases(2023)10.1053/j.ajkd.2023.08.015

N/A

0.670DataRank · unranked

30 citations

Michael T. Eadon, Matthias Kretzler, Jonathan Himmelfarb, Blue B. Lake, Kun Zhang +92 more

A cell-free nanobody engineering platform rapidly generates SARS-CoV-2 neutralizing nanobodies

Nature Communications(2021)10.1038/s41467-021-25777-z

N/A

0.644DataRank · unranked

72 citations

Matteo Gentili, Nir Hacohen, Prisca Liberali, Xun Chen

Optimized Liquid and Gas Phase Fractionation Increases HLA-Peptidome Coverage for Primary Cell and Tissue Samples

Molecular & Cellular Proteomics(2021)10.1016/j.mcpro.2021.100133

N/A

0.609DataRank · unranked

57 citations

Annie Apffel, Karl R. Clauser, Siranush Sarkizova, Giacomo Oliveira, Suzanna Rachimi +12 more

Strategies to discover regulatory circuits of the mammalian immune system

Nature Reviews Immunology(2011)10.1038/nri3109

N/A

0.598DataRank · unranked

53 citations

Prisca Liberali, Nir Hacohen, Ido Amit

Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection

medRxiv(2020)10.1101/2020.07.30.20165241

N/A

0.574DataRank · unranked

45 citations

Azfar Neyaz, Annamária Szabolcs, Angela Shih, Jonathan Chen, Vishal Thapar +26 more

Harnessing the Potential of Multiomics Studies for Precision Medicine in Infectious Disease

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab483

N/A

0.557DataRank · unranked

40 citations

Nima Aghaeepour, Roby P. Bhattacharyya, Clary B. Clish, Brice Gaudillière, Nir Hacohen +13 more

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

Nature Biotechnology(2013)10.1038/nbt.2519

N/A

0.554DataRank · unranked

37 citations

Nicolas Chevrier, Roni Wilentzik, Thomas Eisenhaure, Raktima Raychowdhury, Yael Steuerman +6 more

Protocol for bulk RNA sequencing of enriched human neutrophils from whole blood and estimation of sample purity

STAR Protocols(2023)10.1016/j.xpro.2023.102125

N/A

0.536DataRank · unranked

16 citations

Thomas J. LaSalle, Samuel S. Freeman, Miguel Reyes, Nir Hacohen, Alexandra–Chloé Villani +2 more

Blood immunophenotyping identifies distinct kidney histopathology and outcomes in patients with lupus nephritis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.14.575609

N/A

0.477DataRank · unranked

9 citations

Alec Griffith, Joshua Keegan, Arnon Arazi, John Pulford, Ekaterina Murzin +49 more

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npj Precision Oncology(2023)10.1038/s41698-023-00362-3

N/A

0.434DataRank · unranked

17 citations

Richard Y. Ebright, Xin Hong, Hunter C. Russell, Hongshan Guo, Thomas J. LaSalle +11 more

Classification and functional characterization of regulators of intracellular STING trafficking identified by genome-wide optical pooled screening

Cell Systems(2024)10.1016/j.cels.2024.11.004

N/A

0.426DataRank · unranked

7 citations

Rebecca J. Carlson, Bingxu Liu, Quentin Hellier, Jocelyn Andrews, Yue Qin +3 more

SARS-CoV-2 infection elucidates features of pregnancy-specific immunity

Cell Reports(2024)10.1016/j.celrep.2024.114933

N/A

0.419DataRank · unranked

8 citations

Eunha Kim, Rachelly Normand, Guangqing Lu, Lydia L. Shook, Amanda E. Lyall +28 more

MAUDE: Inferring expression changes in sorting-based CRISPR screens

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/819649

N/A

0.382DataRank · unranked

3 citations

John P. Ray, Nir Hacohen, Prisca Liberali, John Ray, Carl G. de Boer

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Cell Reports Medicine(2025)10.1016/j.xcrm.2025.102210

N/A

0.382DataRank · unranked

9 citations

Angelina M. Cicerchia, Ofir Shorer, Claire A. Palin, Boryana Petrova, Seth Anderson +50 more

Differentiation of exhausted CD8 T cells after termination of chronic antigen stimulation stops short of achieving functional T cell memory

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.03.437705

N/A

0.360DataRank · unranked

10 citations

David Wolski, Sonu Subudhi, Jihad Aljabban, Ruben C. Hoogeveen, Marcos Damasio +25 more

Combined tumor and immune signals from genomes or transcriptomes predict outcomes of checkpoint inhibition in melanoma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.03.450733

N/A

0.358DataRank · unranked

7 citations

Moshe Sade-Feldman, Jaegil Kim, Chip Stewart, Anna Gonye, Arvind Ravi +34 more

Intrahepatic plasma cells, but not atypical memory B cells, associate with clinical phases of chronic hepatitis B

European Journal of Immunology(2024)10.1002/eji.202451085

N/A

0.334DataRank · unranked

7 citations

Martin Arreola Villanueva, Jasmin Joseph‐Chazan, Boris J. B. Beudeker, Robert J. de Knegt, Raymond Chung +10 more

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Journal of Clinical Oncology(2021)10.1200/jco.2021.39.15_suppl.9522

N/A

0.326DataRank · unranked

3 citations

Donald P. Lawrence, David F. McDermott, Mofei Liu, Elizabeth I. Buchbinder, Irena Gushterova +14 more

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/188961

N/A

0.305DataRank · unranked

3 citations

Jenny Chen, Rachel E. Gate, Meena Subramaniam, Tushar Bhangale, Mark N. Lee +18 more

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bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.30.426796

N/A

0.297DataRank · unranked

4 citations

Matan Hofree, Jonathan Chen, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji +71 more

Disrupting CD38-driven T cell dysfunction restores sensitivity to cancer immunotherapy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.12.579184

N/A

0.290DataRank · unranked

5 citations

Angelina M. Cicerchia, Ofir Shorer, Boryana Petrova, Seth Anderson, Joshua Park +48 more

Unsupervised Protein-Ligand Binding Energy Prediction via Neural Euler's Rotation Equation

PubMed(2023)10.48550/arxiv.2301.10814

N/A

0.290DataRank · unranked

4 citations

Siranush Sarkizova, Xun Chen, Nir Hacohen, Caroline Uhler, Wengong Jin

Plasma proteomic biomarkers identify non-responders and reveal biological insights about the tumor microenvironment in melanoma patients after PD1 blockade

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.02.478819

N/A

0.269DataRank · unranked

5 citations

Marijana Ručević, Emmett Sprecher, Milan Parikh, Jiajia Chen, Dennie T. Frederick +23 more

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The Journal of Immunology(2021)10.4049/jimmunol.206.supp.68.13

N/A

0.262DataRank · unranked

3 citations

Karin Pelka, Matan Hofree, Marios Giannakis, Genevieve M. Boland, Andrew J. Aguirre +5 more

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medRxiv(2024)10.1101/2024.10.08.24315092

N/A

0.208DataRank · unranked

3 citations

Milan Parikh, Leon Pappas, Moshe Sade-Feldman, Anupriya S. Kulkarni, Lynn Bi +19 more

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Nature Biotechnology(2023)10.1038/s41587-023-01942-1

N/A

0.179DataRank · unranked

2 citations

Leif S. Ludwig, Christoph Muus, Satyen H. Gohil, Tongtong Zhao, Zachary Chiang +15 more

Specific oncogene activation of the cell of origin in mucosal melanoma

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.22.590595

N/A

0.168DataRank · unranked

2 citations

Jiajia Chen, Emily Robitschek, Chloé S. Baron, Constance Wu, Aikaterini Dedeilia +17 more

Whole Genome Sequencing Identifies Functional Mutations In the Wnt Pathway In CLL

Blood(2010)10.1182/blood.v116.21.693.693

N/A

0.153DataRank · unranked

1 citations

Nathalie Pochet, Kristian Cibulskis, Wandi Zhang, Mike Lawrence, Quinlan L. Sievers +12 more

Specific oncogene activation of the cell of origin in mucosal melanoma

Nature Communications(2025)10.1038/s41467-025-61937-1

N/A

0.107DataRank · unranked

1 citations

Jiajia Chen, Chloé S. Baron, Kaiwen Sun, Emily Robitschek, Alicia M. McConnell +18 more

Optimized liquid and gas phase fractionation increase HLA-peptidome coverage for primary cell and tissue samples

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.25.445487

N/A

0.104DataRank · unranked

1 citations

Annie Apffel, Karl R. Clauser, Siranush Sarkizova, Giacomo Oliveira, Suzanna Rachimi +12 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

eLife(2025)10.7554/elife.104815

N/A

0.104DataRank · unranked

1 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.29.361287

N/A

0.104DataRank · unranked

1 citations

Matteo Gentili, Nir Hacohen, Prisca Liberali, Xun Chen

GeNets: A unified web platform for network-based analyses of genomic data

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/196303

N/A

0.104DataRank · unranked

1 citations

April Kim, Joseph Rosenbluh, Heiko Horn, Liraz Greenfeld, David An +21 more

Multi-Scalar Data Integration Links Glomerular Angiopoietin-Tie Signaling Pathway Activation With Progression of Diabetic Kidney Disease

Diabetes(2022)10.2337/db22-0169

N/A

0DataRank · unranked

17 citations

Viji Nair, Yiyang Zhao, Dong‐Yuan Chang, Christine P. Limonte, Nisha Bansal +92 more

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UNC Libraries(2020)10.17615/hcw5-ff74

N/A

0DataRank · unranked

0 citations

Melissa Tai, Zaida G. Ramirez‐Ortiz, Nir Hacohen, Andrew D. Luster, Glenn S. Cowley +6 more

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bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.02.490100

N/A

0DataRank · unranked

11 citations

Martine Therrien, Saša Jereb, Tushar Kamath, Trevor Atkeson, Samuel E. Marsh +18 more

Proximity-dependent labeling identifies dendritic cells that drive the tumor-specific CD4 + T cell response

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.25.513771

N/A

0DataRank · unranked

4 citations

Tiago BR Castro, Sandra Nakandakari-Higa, Ang Cui, Chia‐Hao Lin, Moshe Sade-Feldman +10 more

ESCRT-dependent STING degradation curtails steady-state and cGAMP-induced signaling

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.22.509044

N/A

0DataRank · unranked

2 citations

Bingxu Liu, Malvina Papanastasiou, Deborah Dele‐Oni, Marc A. Schwartz, Rebecca J. Carlson +7 more

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Research Square(2022)10.21203/rs.3.rs-2152423/v1

N/A

0DataRank · unranked

2 citations

Aleksey Chudnovskiy, Sandra Nakandakari-Higa, Tiago B. R. Castro, Ang Cui, Chia‐Hao Lin +10 more

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Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.3116

N/A

0DataRank · unranked

0 citations

Neal P. Smith, Moshe Sade-Feldman, Dennie T. Frederick, Russell W. Jenkins, Justine V. Cohen +13 more

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Science(2023)10.1126/science.ade2292

N/A

0DataRank · unranked

627 citations

Pratyaksha Wirapati, Marius Messemaker, Whijae Roh, Béatrice Zitti, Florent Duval +28 more

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medRxiv(2020)10.1101/2020.03.13.20034348

N/A

0DataRank · unranked

0 citations

Jill P. Buyon, Chandra Mohan, Ting Zhang, H. Michael Belmont, Peter Izmirly +16 more

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Science(2023)10.1126/science.adf8974

N/A

0DataRank · unranked

205 citations

Rebecca J. Carlson, Ivan S. Pires, Matteo Gentili, Ellie Feng, Quentin Hellier +5 more

SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.02.324145

N/A

0DataRank · unranked

21 citations

Susan Klaeger, Siranush Sarkizova, Leah R. Pearlman, Da‐Yuan Chen, Matthew R. Bauer +16 more

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Cancer Immunology Research(2020)10.1158/2326-6066.cir-20-0526

N/A

0DataRank · unranked

31 citations

Ute Burkhardt, Nir Hacohen, Catherine J. Wu, Edward F. Fritsch

Loss of the Nuclear Protein RTF2 Enhances Influenza Virus Replication

Journal of Virology(2020)10.1128/jvi.00319-20

N/A

0DataRank · unranked

10 citations

Bo Li, Ang Cui, Thomas Eisenhaure, Raktima Raychowdhury, David Lieb +2 more

Integrated urine proteomics and renal single-cell genomics identify an IFN-γ response gradient in lupus nephritis

JCI Insight(2020)10.1172/jci.insight.138345

N/A

0DataRank · unranked

95 citations

Jill P. Buyon, Chandra Mohan, Ting Zhang, H. Michael Belmont, Peter Izmirly +16 more

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Nature Communications(2020)10.1038/s41467-019-13965-x

N/A

0DataRank · unranked

249 citations

Sara Clohisey Hendry, Bing Shao Chia, Bo Wang, Ang Cui, Thomas Eisenhaure +20 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v2

(2021)10.17504/protocols.io.busfnwbn

N/A

0DataRank · unranked

0 citations

Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

Single-cell RNA sequencing of liver fine-needle aspirates captures immune diversity in the blood and liver in chronic hepatitis B patients

Hepatology(2023)10.1097/hep.0000000000000438

N/A

0DataRank · unranked

49 citations

Sonu Subudhi, Arlin Keo, Juan Diego Sánchez Vásquez, Nádia Conceição‐Neto, Deeqa Mahamed +30 more

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Neuro-Oncology(2018)10.1093/neuonc/noy148.027

N/A

0DataRank · unranked

0 citations

Itay Tirosh, Annabelle Anandappa, Jing Sun, Chang‐Jiun Wu, Evisa Gjini +21 more

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medRxiv(2025)10.1101/2025.09.19.25334095

N/A

0DataRank · unranked

0 citations

Pritha Sen, Christopher V. Cosgriff, Jessica Tantivit, Thomas Eisenhaure, Thomas J. LaSalle +61 more

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Cell Reports(2023)10.1016/j.celrep.2023.113596

N/A

0DataRank · unranked

15 citations

Da‐Yuan Chen, Siranush Sarkizova, Hannah B. Taylor, Matteo Gentili, Gabrielle M. Hernandez +10 more

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Science Advances(2023)10.1126/sciadv.ade5090

N/A

0DataRank · unranked

5 citations

Samantha M. Leff, Matteo Gentili, Nir Hacohen, Paul C. Blainey, Miguel Reyes

The HLA-II immunopeptidome of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.26.542482

N/A

0DataRank · unranked

5 citations

Da‐Yuan Chen, Siranush Sarkizova, Hannah B. Taylor, Matteo Gentili, Leah R. Pearlman +9 more

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Nature Immunology(2024)10.1038/s41590-024-01792-2

N/A

0DataRank · unranked

132 citations

Linda T. Nieman, Maxwell Spurrell, Vjola Jorgji, Liad Elmelech, Peter Richieri +32 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v1

(2019)10.17504/protocols.io.batcieiw

N/A

0DataRank · unranked

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Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

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Nature Communications(2024)10.1038/s41467-023-44467-6

N/A

0DataRank · unranked

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Science Immunology(2024)10.1126/sciimmunol.adq8843

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0DataRank · unranked

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N/A

0DataRank · unranked

12 citations

Derek C. Angus, Katie L. Burnham, Thierry Calandra, Carolyn S. Calfee, Alex Gutteridge +16 more

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Lara D. Veeken(2024)10.1093/rheumatology/keae559

N/A

0DataRank · unranked

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(2025)10.7554/elife.104815.3.sa2

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Current Opinion in Immunology(2024)10.1016/j.coi.2024.102463

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0DataRank · unranked

0 citations

Liad Elmelech, Alexander L. Tang, Nir Hacohen, Jonathan Chen

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Research Square(2024)10.21203/rs.3.rs-3508654/v1

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0DataRank · unranked

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Yijia Li, Angela Shih, Sergio Poli, Keiko Kunitoki, George A. Alba +94 more

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(2025)10.1101/2025.10.31.25338685

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0DataRank · unranked

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0DataRank · unranked

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Derin B. Keskin, Chloe Ran Tu, Cleo Forman, Allison P. Vanasse, Haley E. Sax +39 more

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The Journal of Experimental Medicine(2025)10.1084/jem.20241873

N/A

0DataRank · unranked

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Journal of Clinical Investigation(2025)10.1172/jci181034

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0DataRank · unranked

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Regular and Young Investigator Award Abstracts(2025)10.1136/jitc-2025-sitc2025.0371

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0DataRank · unranked

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0DataRank · unranked

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0DataRank · unranked

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Human Molecular Genetics(2021)10.1093/hmg/ddab372

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0DataRank · unranked

15 citations

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CeVICA selection protocol v1

(2021)10.17504/protocols.io.bxn9pmh6

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0DataRank · unranked

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Matteo Gentili, Nir Hacohen, Prisca Liberali, Xun Chen

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bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.01.462818

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0DataRank · unranked

26 citations

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Journal of Leukocyte Biology(2021)10.1002/jlb.3a0218-069rr

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0DataRank · unranked

11 citations

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medRxiv(2021)10.1101/2021.07.10.21260293

N/A

0DataRank · unranked

13 citations

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Open Forum Infectious Diseases(2021)10.1093/ofid/ofab153

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0DataRank · unranked

23 citations

James P. Flynn, Alexandra Rosenthal, Hannah Jordan, Yijia Li, Rida Chishti +95 more

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American Journal of Hematology(2021)10.1002/ajh.26372

N/A

0DataRank · unranked

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Arnav Mehta, MGH COVID‐19 Collection & Processing Team, Kyle R. Kays, Caroline Beakes, Justin Margolin +4 more

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medRxiv(2021)10.1101/2021.07.11.21260338

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0DataRank · unranked

8 citations

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Kidney International(2021)10.1016/j.kint.2021.04.037

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0DataRank · unranked

47 citations

Mia R. Colona, Bryan Kestenbaum, Leonidas G. Alexopoulos, Ragnar Pálsson, Anand Srivastava +90 more

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bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.04.463121

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0DataRank · unranked

7 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.15.468669

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0DataRank · unranked

5 citations

Ang Cui, Ava P. Soleimany, Maurice Bukenya, Heya Lee, Christopher A. Cottrell +17 more

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Arthritis & Rheumatology(2021)10.1002/art.42023

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0DataRank · unranked

92 citations

Deepak A. Rao, Chandra Mohan, Ting Zhang, Avi Z. Rosenberg, Paride Fenaroli +18 more

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0DataRank · unranked

49 citations

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Regular and Young Investigator Award Abstracts(2021)10.1136/jitc-2021-sitc2021.641

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0DataRank · unranked

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