Tamar Schlick

ORCID: 0000-0002-2392-2062

Also affiliated with Courant Institute of Mathematical Sciences, Research Square (United States), Simons Foundation, New York University, East China Normal University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 38 papers. Top paper: “Abolished frameshifting for predicted structure-stabilizing SARS-CoV-2 mutants: implications to alternative conformations and their statistical structural analyses”.

Abolished frameshifting for predicted structure-stabilizing SARS-CoV-2 mutants: implications to alternative conformations and their statistical structural analyses

RNA(2024)10.1261/rna.080035.124

N/A

0.464DataRank · unranked

21 citations

Shuting Yan, Tamar Schlick, Alain Laederach, Abhishek Dey

Structural insights into the cooperative nucleosome recognition and chromatin opening by FOXA1 and GATA4

Molecular Cell(2024)10.1016/j.molcel.2024.07.016

N/A

0.406DataRank · unranked

14 citations

Hanqiao Feng, Furong Huang, Iris Zhu, Stephanie Portillo‐Ledesma, Dan Shi +6 more

Chromatin Fiber Folding Represses Transcription and Loop Extrusion in Quiescent Cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.24.396713

N/A

0.241DataRank · unranked

4 citations

Dejun Lin, Stephanie Portillo‐Ledesma, Po‐Yen Lin, Dakota R. Hunt, Cheng-Fu Kao +4 more

Machine learning tools advance biophysics

Biophysical Journal(2024)10.1016/j.bpj.2024.07.036

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0.165DataRank · unranked

2 citations

Guo‐Wei Wei, Tamar Schlick

Multiscale Genome Organization: Dazzling Subject and Inventive Methods

Biophysical Journal(2020)10.1016/j.bpj.2020.04.007

N/A

0DataRank · unranked

1 citations

Tamar Schlick

Structure-Altering Mutations of the SARS-CoV-2 Frame Shifting RNA Element

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.28.271965

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0DataRank · unranked

5 citations

Quanyan Zhu, Swati Jain, Shuting Yan, Tamar Schlick

Mesoscale Modeling and Single-Nucleosome Tracking Reveal Remodeling of Clutch Folding and Dynamics in Stem Cell Differentiation

Cell Reports(2021)10.1016/j.celrep.2020.108614

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0DataRank · unranked

82 citations

Stephanie Portillo‐Ledesma, Maria Victoria Neguembor, Martina Pesaresi, Walaa Oweis, Talia Miriam Rohrlich +6 more

Biomolecular Modeling and Simulation: A Prospering Multidisciplinary Field

Annual Review of Biophysics(2021)10.1146/annurev-biophys-091720-102019

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0DataRank · unranked

74 citations

Stephanie Portillo‐Ledesma, Christopher G. Myers, Lauren Beljak, Qiuying Chen, Sami Dakhel +11 more

A MULTISCALE VISION-ILLUSTRATIVE APPLICATIONS FROM BIOLOGY TO ENGINEERING

International Journal for Multiscale Computational Engineering(2021)10.1615/intjmultcompeng.2021039845

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0DataRank · unranked

15 citations

Stephanie Portillo‐Ledesma, Mischa Blaszczyk, Luke Dalessandro, Somnath Ghosh, Klaus Hackl +9 more

Generating folded protein structures with a lattice chain growth algorithm

UNC Libraries(2021)10.17615/y0kk-cy88

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0DataRank · unranked

0 citations

Tamar Schlick, Hin Hark Gan, Alexander Tropsha

Biophysicists’ continued outstanding response to COVID-19

Biophysical Journal(2021)10.1016/j.bpj.2021.06.019

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0DataRank · unranked

2 citations

Eric J. Sundberg, Susan J. Schroeder, M. Madan Babu, Tamar Schlick

To knot or not to knot: Multiple conformations of the SARS-CoV-2 frameshifting RNA element

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.31.437955

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0DataRank · unranked

3 citations

Qiyao Zhu, Abhishek Dey, Swati Jain, Shuting Yan, Alain Laederach +1 more

From butterflies to bits: A sweeping vision for the code of life

Biophysical Reports(2021)10.1016/j.bpr.2021.100010

N/A

0DataRank · unranked

0 citations

Tamar Schlick

Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppression

Nature Communications(2022)10.1038/s41467-022-31353-w

N/A

0DataRank · unranked

43 citations

Qiyao Zhu, Swati Jain, Tamar Schlick, Shuting Yan

Brownian dynamics simulations of mesoscale chromatin fibers

Biophysical Journal(2022)10.1016/j.bpj.2022.09.013

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0DataRank · unranked

27 citations

Stephanie Portillo‐Ledesma, Tamar Schlick, Zilong Li

Biomotors, viral assembly, and RNA nanobiotechnology: Current achievements and future directions

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.11.007

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0DataRank · unranked

23 citations

Damian Beasock, Yang Wang, Yao-Gen Shu, Jonathan D. Dinman, Tamar Schlick +13 more

Chromatin transitions triggered by LH density as epigenetic regulators of the genome

Nucleic Acids Research(2022)10.1093/nar/gkac757

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0DataRank · unranked

13 citations

Meghna Wagley, Tamar Schlick, Stephanie Portillo‐Ledesma

Innovations in biophysics: A sampling of ideas celebrating Ned Seeman’s legacy

(2022)10.1016/j.bpj.2022.11.030

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0DataRank · unranked

0 citations

Tamar Schlick

Evolution of coronavirus frameshifting elements: Competing stem networks explain conservation and variability

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2221324120

N/A

0DataRank · unranked

30 citations

Qiyao Zhu, Jenna Hohl, Alex Dong, Tamar Schlick, Shuting Yan

Hi-BDiSCO: folding 3D mesoscale genome structures from Hi-C data using brownian dynamics

Nucleic Acids Research(2023)10.1093/nar/gkad1121

N/A

0DataRank · unranked

17 citations

Tamar Schlick, Zilong Li

Techniques for and challenges in reconstructing 3D genome structures from 2D chromosome conformation capture data

Current Opinion in Cell Biology(2023)10.1016/j.ceb.2023.102209

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0DataRank · unranked

11 citations

Stephanie Portillo‐Ledesma, Tamar Schlick, Zilong Li

Effect of Single-Residue Mutations on CTCF Binding to DNA: Insights from Molecular Dynamics Simulations

International Journal of Molecular Sciences(2023)10.3390/ijms24076395

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0DataRank · unranked

5 citations

Carrie Chen, Stephanie Portillo‐Ledesma, Tamar Schlick, Albert H. Mao

Regulation of chromatin architecture by protein binding: insights from molecular modeling

Biophysical Reviews(2024)10.1007/s12551-024-01195-5

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0DataRank · unranked

6 citations

Tamar Schlick, Stephanie Portillo‐Ledesma

Abolished frameshifting for predicted structure-stabilizing SARS-CoV-2 mutants: Implications to alternative conformations and their statistical structural analyses

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.28.586935

N/A

0DataRank · unranked

2 citations

Shuting Yan, Tamar Schlick, Alain Laederach, Abhishek Dey

Abolished frameshifting for predicted structure-stabilizing SARS-CoV-2 mutants: Implications to alternative conformations and their statistical structural analyses

UNC Libraries(2024)10.17615/qmxg-9w36

N/A

0DataRank · unranked

0 citations

Alain Laederach, Abhishek Dey, Tamar Schlick, Shuting Yan

Compromised two-start zigzag chromatin folding in immature mouse retina cells driven by irregularly spaced nucleosomes with short DNA linkers

Nucleic Acids Research(2025)10.1093/nar/gkaf457

N/A

0DataRank · unranked

5 citations

Stephanie Portillo‐Ledesma, Evgenya Y. Popova, Nathan Jentink, Matthew T. Swulius, Zilong Li +3 more

RNA Structural Ensemble Determinants of −1 Programmed Ribosomal Frameshifting Efficiency Across Coronavirus Evolution

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169512

N/A

0DataRank · unranked

2 citations

Tamar Schlick, Alain Laederach, Scott R. Allen

Chromatin higher-order folding as influenced by preferred values of linker DNA

Current Opinion in Structural Biology(2025)10.1016/j.sbi.2025.103154

N/A

0DataRank · unranked

6 citations

Stephanie Portillo‐Ledesma, Tamar Schlick, Zilong Li

Incorporating multiscale methylation effects into nucleosome-resolution chromatin models for simulating mesoscale fibers

The Journal of Chemical Physics(2025)10.1063/5.0242199

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0DataRank · unranked

5 citations

Stephanie Portillo‐Ledesma, Moshe Janani, Tamar Schlick, Zilong Li

The influence of 10n and 10n+5 linker lengths on chromatin fiber topologies explored by mesoscale modeling

Biophysical Journal(2025)10.1016/j.bpj.2025.08.030

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0DataRank · unranked

3 citations

Stephanie Portillo‐Ledesma, Moshe Janani, Tamar Schlick, Zilong Li

Molecular dynamics simulations reveal subtle consequences of H3K9 and H3K27 tri-methylation on chromatin constituents

Biophysical Journal(2025)10.1016/j.bpj.2025.08.002

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0DataRank · unranked

1 citations

Zilong Li, Tamar Schlick, Stephanie Portillo‐Ledesma

Nucleosome Linker Length and Distribution as Major Players in Epigenetic Regulation: Insights from Cryo-Electron Microscopy and Modeling of Retina Cell Maturation

DNA and Cell Biology(2025)10.1177/10445498251381313

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0DataRank · unranked

1 citations

Sergei A. Grigoryev, Tamar Schlick

Phase Space Invaders’ podcast episode with Tamar Schlick: a trajectory from mathematics to biology

Biophysical Reviews(2025)10.1007/s12551-025-01271-4

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0DataRank · unranked

1 citations

Tamar Schlick, Miłosz Wieczór

Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture

Nature(2020)10.1038/s41586-020-3017-y

N/A

0DataRank · unranked

267 citations

Andreas Kloetgen, Matt Teater, Adewola Osunsade, Jeannie M. Camarillo, Christopher R. Chin +24 more

Compromised 2-start zigzag chromatin folding in immature mouse retina cells driven by irregularly spaced nucleosomes with short DNA linkers

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.16.633430

N/A

0DataRank · unranked

0 citations

Stephanie Portillo‐Ledesma, Evgenya Y. Popova, Nathan Jentink, Matthew T. Swulius, Zilong Li +3 more

Structure-altering mutations of the SARS-CoV-2 frameshifting RNA element

Biophysical Journal(2020)10.1016/j.bpj.2020.10.012

N/A

0DataRank · unranked

64 citations

Qiyao Zhu, Swati Jain, Shuting Yan, Tamar Schlick

Identification of novel RNA design candidates by clustering the extended RNA-As-Graphs library

Biochimica et Biophysica Acta (BBA) - General Subjects(2020)10.1016/j.bbagen.2020.129534

N/A

0DataRank · unranked

7 citations

Qiyao Zhu, Amiel S. P. Paz, Tamar Schlick, Swati Jain

ANERGY TO SYNERGY-THE ENERGY FUELING THE RXCOVEA FRAMEWORK

International Journal for Multiscale Computational Engineering(2020)10.1615/intjmultcompeng.2020035097

N/A

0DataRank · unranked

1 citations

Jantine A.C. Broek, Charles R. Cantor, Ashley J. Duits, Alfredo Ferro, Hillary W. Gao +9 more