S.K. Burley

Rutgers, The State University of New Jersey

Also affiliated with University of New Brunswick, San Diego Supercomputer Center, Brunswick (United States), Rutgers Sexual and Reproductive Health and Rights, Quantitative BioSciences, Environmental and Occupational Health Sciences Institute

Materials ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

51.2Author DataRank

Indexed papers

33in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 33 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

Nucleic Acids Research(2014)10.1093/nar/gku1214

Top 1%

10.2DataRank

Top 1%538 citations

Andreas Prlić, Chunxiao Bi, Wolfgang F. Bluhm, Cole H. Christie, Shuchismita Dutta +12 more

Papers

Driven by 84 papers — median percentile 76. Top paper: “The RCSB Protein Data Bank: views of structural biology for basic and applied research and education”.

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

Nucleic Acids Research(2014)10.1093/nar/gku1214

Top 1%

10.2DataRank

Top 1%538 citations

Andreas Prlić, Chunxiao Bi, Wolfgang F. Bluhm, Cole H. Christie, Shuchismita Dutta +12 more

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning

Nucleic Acids Research(2022)10.1093/nar/gkac1077

Top 4%

5.5DataRank

Top 4%888 citations

Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen +36 more

RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D

Protein Science(2021)10.1002/pro.4213

Top 6%

4.0DataRank

Top 6%196 citations

Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Li Chen, G.V. Crichlow +30 more

EMDB—the Electron Microscopy Data Bank

Nucleic Acids Research(2023)10.1093/nar/gkad1019

Top 7%

3.0DataRank

Top 7%147 citations

Sanja Abbott, Neli Fonseca, Ryan Pye, Lucas Carrijo, Amudha Kumari Duraisamy +45 more

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank

Nucleic Acids Research(2024)10.1093/nar/gkae1091

Top 8%

2.8DataRank

Top 8%276 citations

Rusham Bhatt, Charmi Bhikadiya, Chunxiao Bi, Alison Biester, Pratyoy Biswas +46 more

Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students

Biomolecules(2022)10.3390/biom12101425

Top 8%

2.6DataRank

Top 8%133 citations

Helen M. Berman, José M. Duarte, Zukang Feng, Justin W. Flatt, Brian P. Hudson +13 more

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.01.406637

Top 9%

2.5DataRank

Top 9%28 citations

Christine Zardecki, Elliott M. Dolan, Changpeng Lu, Zhuofan Shen, Shuchismita Dutta +59 more

Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules

Structure(2006)10.1016/j.str.2006.06.005

N/A

2.5DataRank · unranked

70 citations

Stephen K. Burley, Wah Chiu, Andrej Sali, Alexei Adzhubei, Philip E. Bourne +28 more

PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167599

Top 10%

2.1DataRank

Top 10%95 citations

Jasmine Young, Chenghua Shao, Zukang Feng, Vladimir Guranović, Catherine L. Lawson +17 more

BindingDB in 2024: a FAIR knowledgebase of protein-small molecule binding data

Nucleic Acids Research(2024)10.1093/nar/gkae1075

Top 11%

2.0DataRank

Top 11%187 citations

Linda Hwang, S.K. Burley, Carmen I. Nitsche, Christopher Southan, W. Patrick Walters +2 more

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D

Protein Science(2022)10.1002/pro.4482

Top 11%

2.0DataRank

Top 11%107 citations

Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen +36 more

RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.167994

Top 11%

1.9DataRank

Top 11%80 citations

Charmi Bhikadiya, Chunxiao Bi, Henry Chao, José M. Duarte, Shuchismita Dutta +12 more

A roadmap for the functional annotation of protein families: a community perspective

Database(2022)10.1093/database/baac062

Top 14%

1.5DataRank

Top 14%63 citations

Rocío Amorín, Cecilia N. Arighi, Jill Babor, Alex Bateman, Ian K. Blaby +54 more

Assessing PDB macromolecular crystal structure confidence at the individual amino acid residue level

Structure(2022)10.1016/j.str.2022.08.004

Top 14%

1.4DataRank

Top 14%46 citations

Sebastian Bittrich, Sijian Wang, S.K. Burley, Chenghua Shao

RCSB Protein Data Bank 1D tools and services

Bioinformatics(2020)10.1093/bioinformatics/btaa1012

Top 18%

1.1DataRank

Top 18%33 citations

Yana Rose, John Westbrook, S.K. Burley, José M. Duarte, Joan Segura

Targeting a cell surface vitamin D receptor on tumor-associated macrophages in triple-negative breast cancer

eLife(2021)10.7554/elife.65145

N/A

1.1DataRank · unranked

34 citations

Amin Hajitou, Wouter H. P. Driessen, Bettina Proneth, Marina Cardó‐Vila, Daniela I. Staquicini +25 more

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

Nucleic Acids Research(2021)10.1093/nar/gkab314

N/A

1.1DataRank · unranked

1194 citations

Sebastian Bittrich, Mandar Deshpande, Radka Svobodová Vařeková, Karel Berka, Václav Bazgier +5 more

Modernized uniform representation of carbohydrate molecules in the Protein Data Bank

Glycobiology(2021)10.1093/glycob/cwab039

Top 19%

1.1DataRank

Top 19%32 citations

Zukang Feng, John Westbrook, Ezra Peisach, John M. Berrisford, Yasuyo Ikegawa +5 more

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7

Top 23%

0.871DataRank

Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

Impact of the Protein Data Bank on antineoplastic approvals

Drug Discovery Today(2020)10.1016/j.drudis.2020.02.002

Top 24%

0.835DataRank

Top 24%32 citations

Rose Soskind, Brian P. Hudson, S.K. Burley, John Westbrook

RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study

Oncogene(2020)10.1038/s41388-020-01461-2

Top 26%

0.765DataRank

Top 26%22 citations

S.K. Burley, David S. Goodsell

Insights from 20 years of the Molecule of the Month

Biochemistry and Molecular Biology Education(2020)10.1002/bmb.21360

Top 28%

0.713DataRank

Top 28%23 citations

Christine Zardecki, Helen M. Berman, S.K. Burley, David S. Goodsell

Amino acids control blood glucose levels through mTOR signaling

European Journal of Cell Biology(2022)10.1016/j.ejcb.2022.151240

N/A

0.646DataRank · unranked

73 citations

Ziqiang Yuan, S.K. Burley, Steven K. Libutti, Xiao-Feng Zheng, Jialin Fan

ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168021

Top 31%

0.630DataRank

Top 31%22 citations

Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek +20 more

RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens

Structure(2021)10.1016/j.str.2021.10.008

Top 35%

0.551DataRank

Top 35%18 citations

S.K. Burley, David S. Goodsell

Community recommendations on cryoEM data archiving and validation

IUCrJ(2024)10.1107/s2052252524001246

N/A

0.542DataRank · unranked

36 citations

Paul D. Adams, Sarah J. Butcher, Catherine L. Lawson, Alexis Rohou, Peter B. Rosenthal +42 more

RCSB Protein Data Bank: Delivering integrative structures alongside experimental structures and computed structure models

Nucleic Acids Research(2025)10.1093/nar/gkaf1187

Top 40%

0.483DataRank

Top 40%17 citations

Yana Rose, Dennis W. Piehl, José M. Duarte, Sebastian Bittrich, Chunxiao Bi +21 more

Structural models of SARS-CoV-2 Omicron variant in complex with ACE2 receptor or antibodies suggest altered binding interfaces

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.12.472313

N/A

0.470DataRank · unranked

22 citations

Christopher Markosian, D. Balamurugan, Renata Pasqualini, Wadih Arap, S.K. Burley +2 more

Integrative illustration for coronavirus outreach

PLoS Biology(2020)10.1371/journal.pbio.3000815

N/A

0.470DataRank · unranked

22 citations

Maria Voigt, Christine Zardecki, S.K. Burley, David S. Goodsell

PDB-IHM: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.168963

Top 43%

0.439DataRank

Top 43%12 citations

Benjamin Webb, Arthur O. Zalevsky, Hongsuda Tangmunarunkit, Monica Sekharan, Serban Voinea +11 more

Announcing the launch of Protein Data Bank China as an Associate Member of the Worldwide Protein Data Bank Partnership

Acta Crystallographica Section D Structural Biology(2023)10.1107/s2059798323006381

Top 44%

0.425DataRank

Top 44%16 citations

Sameer Velankar, Ardan Patwardhan, Jeffrey C. Hoch, S.K. Burley, Genji Kurisu +1 more

Impact of structural biology and the protein data bank on us fda new drug approvals of low molecular weight antineoplastic agents 2019–2023

Oncogene(2024)10.1038/s41388-024-03077-2

Top 46%

0.398DataRank

Top 46%9 citations

Amy Wu-Wu, Shuchismita Dutta, Shridar Ganesan, X.F. Steven Zheng, S.K. Burley

IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168546

Top 46%

0.395DataRank

Top 46%11 citations

Benjamin Webb, John Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei +30 more

Parallel delivery of experimentally determined structures and computed structure models at RCSB protein data bank (RCSB PDB, RCSB.ORG)

Biophysical Journal(2024)10.1016/j.bpj.2023.11.1746

Top 46%

0.394DataRank

Top 46%4 citations

S.K. Burley, Dennis W. Piehl

Generative artificial intelligence performs rudimentary structural biology modeling

Scientific Reports(2024)10.1038/s41598-024-69021-2

N/A

0.385DataRank · unranked

12 citations

Christopher Markosian, S.K. Burley, Michael B. Mathews, Renata Pasqualini, Wadih Arap +1 more

A new chapter for RCSB Protein Data Bank Molecule of the Month in 2025

Structural Dynamics(2025)10.1063/4.0000302

N/A

0.312DataRank · unranked

7 citations

David S. Goodsell, S.K. Burley, Christine Zardecki, Janet Iwasa

Restraint validation of biomolecular structures determined by NMR in the Protein Data Bank

Structure(2024)10.1016/j.str.2024.02.011

N/A

0.312DataRank · unranked

7 citations

Eliza Płoskoń, Roberto Tejero, Masashi Yokochi, Déborah Harrus, Yu‐He Liang +17 more

Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.30.458222

N/A

0.241DataRank · unranked

4 citations

Daniela I. Staquicini, Prashant Dogra, Esteban Dodero-Rojas, Fenny H. F. Tang, Tracey L. Smith +10 more

An AI/ML-modeled structural atlas of the human protein interactome with functional and cancer-focused networks

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.03.663068

Top 61%

0.241DataRank

Top 61%4 citations

Christopher Markosian, S.K. Burley, Renata Pasqualini, Wadih Arap, Alexander M. Ille

ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.06.518550

Top 63%

0.216DataRank

Top 63%3 citations

Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek +20 more

High-throughput prediction of peptide structural conformations with AlphaFold2

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.03.626727

N/A

0.208DataRank · unranked

3 citations

Christopher Markosian, S.K. Burley, Paul C. Whitford, José N. Onuchic, Renata Pasqualini +2 more

An idea to explore: How an interdisciplinary undergraduate course exploring a global health challenge in molecular detail enabled science communication and collaboration in diverse audiences

Biochemistry and Molecular Biology Education(2022)10.1002/bmb.21699

N/A

0.165DataRank · unranked

2 citations

Jennifer Jiang, Sutapa Ghosh, Shriya Patel, Charmi Bhikadiya, Robert Lowe +5 more

Folding paper models of biostructures for outreach and education

Patterns(2024)10.1016/j.patter.2024.100931

N/A

0.104DataRank · unranked

1 citations

Shuchismita Dutta, Brian P. Hudson, Maria Voigt, S.K. Burley, Christine Zardecki +1 more

Real-time structural motif searching in proteins using an inverted index strategy

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.11.293977

N/A

0.104DataRank · unranked

1 citations

S.K. Burley, Alexander Rose, Sebastian Bittrich

IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169598

Top 100%

0DataRank

Top 100%0 citations

Brinda Vallat, Benjamin Webb, Hongsuda Tangmunarunkit, Monica Sekharan, Aref Shafaeibejestan +22 more

Real-time structural motif searching in proteins using an inverted index strategy

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008502

N/A

0DataRank · unranked

38 citations

S.K. Burley, Alexander Rose, Sebastian Bittrich

Real time structural search of the Protein Data Bank

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007970

N/A

0DataRank · unranked

66 citations

S.K. Burley, José M. Duarte, Dmytro Guzenko

BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008247

N/A

0DataRank · unranked

32 citations

Sebastian Bittrich, Sameer Velankar, Jaroslav Koča, Radka Svobodová Vařeková, S.K. Burley +2 more

Virtual Boot Camp: COVID‐19 evolution and structural biology

Biochemistry and Molecular Biology Education(2020)10.1002/bmb.21428

N/A

0DataRank · unranked

7 citations

YANA BROMBERG, P. Craig, Siobain Duffy, Shuchismita Dutta, Bonnie L. Hall +14 more

Protein Data Bank in the time of coronavirus: how open-access 3D structures are enabling research and development in fundamental biology, biomedicine, biotechnology and drug discovery as we confront the global SARS-CoV-2 pandemic

Acta Crystallographica Section A Foundations and Advances(2020)10.1107/s0108767320099523

Top 100%

0DataRank

Top 100%0 citations

S.K. Burley

Molecular storytelling for structural biology outreach and education

Acta Crystallographica Section A Foundations and Advances(2020)10.1107/s0108767320099900

N/A

0DataRank · unranked

0 citations

Shuchismita Dutta, Maria Voigt, Christine Zardecki, S.K. Burley, David S. Goodsell

Evolution of the SARS‐CoV‐2 proteome in three dimensions (3D) during the first 6 months of the COVID‐19 pandemic

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26250

N/A

0DataRank · unranked

49 citations

Christine Zardecki, Elliott M. Dolan, Changpeng Lu, Zhuofan Shen, Shuchismita Dutta +59 more

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

Structure(2021)10.1016/j.str.2021.02.004

N/A

0DataRank · unranked

44 citations

John Westbrook, Raul Sala, Oliver S. Smart, G. Bricogne, Masaaki Matsubara +9 more

Open-access data: A cornerstone for artificial intelligence approaches to protein structure prediction

Structure(2021)10.1016/j.str.2021.04.010

N/A

0DataRank · unranked

42 citations

Helen M. Berman, S.K. Burley

Toward improving androgen receptor-targeted therapies in male-dominant hepatocellular carcinoma

Drug Discovery Today(2021)10.1016/j.drudis.2021.02.001

N/A

0DataRank · unranked

36 citations

Kristen Spencer, S.K. Burley, Xi Zheng, Hong Zhang

Design and proof-of-concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435496

N/A

0DataRank · unranked

5 citations

Fenny H. F. Tang, Christopher Markosian, Virginia J. Yao, Fernanda I. Staquicini, Esteban Dodero-Rojas +16 more

mTOR regulates aerobic glycolysis through NEAT1 and nuclear paraspeckle-mediated mechanism in hepatocellular carcinoma

Theranostics(2022)10.7150/thno.72581

N/A

0DataRank · unranked

76 citations

Xiaoyang Su, S.K. Burley, Xi Zheng, Hong Zhang

Nuclear SOD1 in Growth Control, Oxidative Stress Response, Amyotrophic Lateral Sclerosis, and Cancer

Antioxidants(2022)10.3390/antiox11020427

N/A

0DataRank · unranked

66 citations

Xiaoyang Su, S.K. Burley, X.F. Steven Zheng, Joyce Xu

Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future

Biophysical Reviews(2022)10.1007/s12551-022-01013-w

N/A

0DataRank · unranked

46 citations

Helen M. Berman, Wah Chiu, Wei Dai, Justin W. Flatt, Brian P. Hudson +11 more

Simplified quality assessment for small-molecule ligands in the Protein Data Bank

Structure(2022)10.1016/j.str.2021.10.003

N/A

0DataRank · unranked

24 citations

John Westbrook, Changpeng Lu, Charmi Bhikadiya, Ezra Peisach, Jasmine Y. Young +7 more

Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection

Molecular Biology and Evolution(2022)10.1093/molbev/msac091

N/A

0DataRank · unranked

13 citations

Daniela I. Staquicini, Prashant Dogra, Esteban Dodero-Rojas, Joseph H. Lubin, Fenny H. F. Tang +12 more

RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies

Bioinformatics(2022)10.1093/bioinformatics/btac317

N/A

0DataRank · unranked

9 citations

Yana Rose, Sebastian Bittrich, S.K. Burley, José M. Duarte, Joan Segura

PDB‐101: Molecular Explorations through Biology and Medicine

The FASEB Journal(2022)10.1096/fasebj.2022.36.s1.r4952

N/A

0DataRank · unranked

2 citations

David S. Goodsell, Shuchismita Dutta, Maria Voigt, S.K. Burley, Christine Zardecki

Bioinformatics and 3D Structural Analysis of the Coronavirus Main Protease Active Site Diversity

The FASEB Journal(2022)10.1096/fasebj.2022.36.s1.0r729

N/A

0DataRank · unranked

0 citations

Joseph H. Lubin, Cassandra Olivas, Christine Zardecki, Mary-Agnes Balogun, Mickayla L. Bacorn +3 more

Assessing macromolecular crystal structures for agreement with experimental data at the individual amino acid residue level

Acta Crystallographica Section A Foundations and Advances(2022)10.1107/s205327332209979x

Top 100%

0DataRank

Top 100%0 citations

Chenghua Shao, Sijian Wang, S.K. Burley

Outcome of Crash Course Training on Protein Structure Prediction with Artificial Intelligence

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.01.506222

N/A

0DataRank · unranked

0 citations

Maureen Dougherty, Joseph H. Lubin, Paul G. Arias, Janet Chang, Kenneth Dalenberg +7 more

Modeling of ACE2 and antibodies bound to SARS-CoV-2 provides insights into infectivity and immune evasion

JCI Insight(2023)10.1172/jci.insight.168296

N/A

0DataRank · unranked

6 citations

Christopher Markosian, D. Balamurugan, Trung Minh, Chih‐Hsiung Chen, Dongfang Liu +5 more

A comprehensive survey of coronaviral main protease active site diversity in 3D: Identifying and analyzing drug discovery targets in search of broad specificity inhibitors for the next coronavirus pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.30.526101

N/A

0DataRank · unranked

8 citations

Samantha G. Martinusen, Christine Zardecki, Cassandra Olivas, Mickayla Bacorn, MaryAgnes Balogun +8 more

Exploring experimental structures and computed structure models from artificial intelligence/machine learning at RCSB Protein Data Bank (RCSB PDB, RCSB.org)

Biophysical Journal(2023)10.1016/j.bpj.2022.11.1606

N/A

0DataRank · unranked

0 citations

José Alberto Duarte, Sebastian Bittrich, Chunxiao Bi, Charmi Bhikadiya, Maryam Fayazi +10 more

Restraint Validation of Biomolecular Structures Determined By NMR in the Protein Data Bank

SSRN Electronic Journal(2023)10.2139/ssrn.4507732

N/A

0DataRank · unranked

0 citations

Eliza Płoskoń, Roberto Tejero, Masashi Yokochi, Déborah Harrus, Yu‐He Liang +17 more

Economics of biodata archiving viewed through the lens of the RCSB Protein Data Bank

Acta Crystallographica Section A Foundations and Advances(2023)10.1107/s2053273323098121

Top 100%

0DataRank

Top 100%0 citations

S.K. Burley

RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments

Bioinformatics(2024)10.1093/bioinformatics/btae370

N/A

0DataRank · unranked

201 citations

Joan Segura, José M. Duarte, S.K. Burley, Yana Rose, Sebastian Bittrich

Nuclear mTOR Signaling Orchestrates Transcriptional Programs Underlying Cellular Growth and Metabolism

Cells(2024)10.3390/cells13090781

N/A

0DataRank · unranked

98 citations

Jialin Fan, Ahmed Abu‐Zaid, S.K. Burley, Xuan Zheng, Tinghan Zhao

Describing and Sharing Molecular Visualizations Using the MolViewSpec Toolkit

Current Protocols(2024)10.1002/cpz1.1099

N/A

0DataRank · unranked

8 citations

Adam Midlik, Mihaly Varadi, Sameer Velankar, S.K. Burley, Jasmine Young +3 more

RCSB PDB resources for teaching and learning about symmetry

Biophysical Journal(2024)10.1016/j.bpj.2023.11.1901

N/A

0DataRank · unranked

1 citations

Shuchismita Dutta, S.K. Burley, P. Craig

ZMPY3D: accelerating protein structure volume analysis through vectorized 3D Zernike moments and Python-based GPU integration

Bioinformatics Advances(2024)10.1093/bioadv/vbae111

N/A

0DataRank · unranked

1 citations

S.K. Burley, José M. Duarte, Jhih‐Siang Lai

Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Research Square(2024)10.21203/rs.3.rs-3864137/v1

N/A

0DataRank · unranked

2 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent Chen +76 more

Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.15.575520

N/A

0DataRank · unranked

1 citations

Eliza Płoskoń, Roberto Tejero, Masashi Yokochi, Déborah Harrus, Yu‐He Liang +17 more

Generative artificial intelligence performs rudimentary structural biology modeling

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.10.575113

N/A

0DataRank · unranked

0 citations

Christopher Markosian, S.K. Burley, Michael B. Mathews, Renata Pasqualini, Wadih Arap +1 more

From sequence to protein structure and conformational dynamics with artificial intelligence/machine learning

Structural Dynamics(2025)10.1063/4.0000765

N/A

0DataRank · unranked

6 citations

Emily Anas, Michael B. Mathews, S.K. Burley, Alexander M. Ille

rcsb-api: Python Toolkit for Streamlining Access to RCSB Protein Data Bank APIs

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.168970

N/A

0DataRank · unranked

5 citations

Brinda Vallat, Ivana Truong, Habiba Morsy, Rusham Bhatt, Santiago Blaumann +11 more

MolViewSpec: a Mol* extension for describing and sharing molecular visualizations

Nucleic Acids Research(2025)10.1093/nar/gkaf370

N/A

0DataRank · unranked

4 citations

Sebastian Bittrich, Jennifer R. Fleming, Sreenath Nair, Sameer Velankar, S.K. Burley +4 more

Visualizing and analyzing 3D biomolecular structures using Mol* at RCSB.org: Influenza A H5N1 virus proteome case study

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