Alan E. Tomkinson

Also affiliated with New Mexico Cancer Center, UNM Comprehensive Cancer Center

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “XRCC1 mediates PARP1- and PAR-dependent recruitment of PARP2 to DNA damage sites”.

XRCC1 mediates PARP1- and PAR-dependent recruitment of PARP2 to DNA damage sites

Nucleic Acids Research(2025)10.1093/nar/gkaf086

N/A

0.434DataRank · unranked

17 citations

Kay Sze Karina Leung, Kaitlynn F. Wolfe, Nicolas Call, Seema Khattri Bhandari, Xiaoyu Huang +4 more

End Processing in NHEJ by Polymerase λ and PNKP is coordinated during short-range synapsis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.25.656038

N/A

0.213DataRank · unranked

3 citations

Andrea M. Kaminski, Lars C. Pedersen, Tasmin Naila, Alan E. Tomkinson, Susan P. Lees‐Miller +3 more

Dynamic DNA-bound PCNA complexes co-ordinate Okazaki fragment synthesis, processing and ligation

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.10.032

N/A

0DataRank · unranked

21 citations

Rhys C. Brooks, Aleksandr Sverzhinsky, John M. Pascal, Alan E. Tomkinson, Yoshihiro Matsumoto

An atypical BRCT–BRCT interaction with the XRCC1 scaffold protein compacts human DNA Ligase IIIα within a flexible DNA repair complex

Nucleic Acids Research(2020)10.1093/nar/gkaa1188

N/A

0DataRank · unranked

32 citations

Ishtiaque Rashid, Aleksandr Sverzhinsky, Yasin Pourfarjam, Miaw-Sheue Tsai, Tom Ellenberger +5 more

NAD+ is not utilized as a co-factor for DNA ligation by human DNA ligase IV

Nucleic Acids Research(2020)10.1093/nar/gkaa1118

N/A

0DataRank · unranked

4 citations

Tasmin Naila, Michael R. Lieber, Alan E. Tomkinson, Bailin Zhao

Structural basis of long-range to short-range synaptic transition in NHEJ

Nature(2021)10.1038/s41586-021-03458-7

N/A

0DataRank · unranked

165 citations

Linda Lee, Tasmin Naila, Susan Fishbain, Annie Wang, Alan E. Tomkinson +3 more

Direct interaction of DNA repair protein tyrosyl DNA phosphodiesterase 1 and the DNA ligase III catalytic domain is regulated by phosphorylation of its flexible N-terminus

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100921

N/A

0DataRank · unranked

14 citations

Michal Hammel, Aleksandr Sverzhinsky, Miaw-Sheue Tsai, John M. Pascal, John A. Tainer +2 more

Mammalian DNA ligases; roles in maintaining genome integrity

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168276

N/A

0DataRank · unranked

26 citations

Seema Khattri Bhandari, Tasmin Naila, Alan E. Tomkinson, Annahita Sallmyr

Cryo-EM visualization of DNA-PKcs structural intermediates in NHEJ

Science Advances(2023)10.1126/sciadv.adg2838

N/A

0DataRank · unranked

30 citations

Alex Vogt, Linda Lee, Tasmin Naila, Ryan McKeown, Alan E. Tomkinson +3 more

The CSB chromatin remodeler regulates PARP1- and PARP2-mediated single-strand break repair at actively transcribed DNA regions

Nucleic Acids Research(2023)10.1093/nar/gkad515

N/A

0DataRank · unranked

20 citations

Robert J. Lake, Karen L. Cooper, Alan E. Tomkinson, Hua-Ying Fan, Rabeya Bilkis

Human DNA ligases in replication and repair

DNA repair(2020)10.1016/j.dnarep.2020.102908

N/A

0DataRank · unranked

70 citations

Ishtiaque Rashid, Seema Khattri Bhandari, Tasmin Naila, Alan E. Tomkinson, Annahita Sallmyr

FUS Unveiled in Mitochondrial DNA Repair and Targeted Ligase-1 Expression Rescues Repair-Defects in FUS-Linked Neurodegeneration

Voices of Mexico(2023)10.21203/rs.3.rs-3152718/v1

N/A

0DataRank · unranked

0 citations

Manohar Kodavati, Haibo Wang, Wenting Gao, Joy Mitra, Pavana M. Hegde +9 more

FUS unveiled in mitochondrial DNA repair and targeted ligase-1 expression rescues repair-defects in FUS-linked motor neuron disease

Nature Communications(2024)10.1038/s41467-024-45978-6

N/A

0DataRank · unranked

40 citations

Haibo Wang, Wenting Guo, Joy Mitra, Pavana M. Hegde, Vincent Provasek +9 more

Inactive Parp2 causes Tp53-dependent lethal anemia by blocking replication-associated nick ligation in erythroblasts

Molecular Cell(2024)10.1016/j.molcel.2024.09.020

N/A

0DataRank · unranked

21 citations

Dipika Gupta, Alina Vaitsiankova, Seema Khattri Bhandari, Kay Sze Karina Leung, Demis Menolfi +11 more

Global screening of base excision repair in nucleosome core particles

DNA repair(2024)10.1016/j.dnarep.2024.103777

N/A

0DataRank · unranked

12 citations

Danielle L. Sawyer, Tasmin Naila, Joann B. Sweasy, Alan E. Tomkinson, Sarah Delaney +1 more

Redundant but essential functions of PARP1 and PARP2 in DNA ligase I-independent DNA replication

Nucleic Acids Research(2024)10.1093/nar/gkae672

N/A

0DataRank · unranked

6 citations

Nathaniel E. Wiest, Annahita Sallmyr, Ruofei Du, Alan E. Tomkinson, Seema Khattri Bhandari

Inactive Parp2 causes Tp53-dependent lethal anemia by blocking replication-associated nick ligation in erythroblasts

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.12.584665

N/A

0DataRank · unranked

3 citations

Dipika Gupta, Alina Vaitsiankova, Seema Khattri Bhandari, Kay Sze Karina Leung, Demis Menolfi +10 more

The zinc finger of DNA ligase 3α binds to nucleosomes via an arginine anchor

Nature Communications(2025)10.1038/s41467-025-66320-8

N/A

0DataRank · unranked

5 citations

Matthew A. Schaich, Tyler Weaver, Vera Roginskaya, Annahita Sallmyr, Liam P. Leary +4 more

Joining of DNA breaks- interplay between DNA ligases and poly (ADP-ribose) polymerases

DNA repair(2025)10.1016/j.dnarep.2025.103843

N/A

0DataRank · unranked

4 citations

Alan E. Tomkinson, Nicolas Call

Unchanged PCNA and DNMT1 dynamics during replication in DNA ligase I-deficient cells but abnormal chromatin levels of non-replicative histone H1

Scientific Reports(2023)10.1038/s41598-023-31367-4

N/A

0DataRank · unranked

7 citations

Nathaniel E. Wiest, Annahita Sallmyr, Ruofei Du, Laure Ferry, Pierre‐Antoine Defossez +2 more

XRCC1 promotes replication restart, nascent fork degradation and mutagenic DNA repair in BRCA2-deficient cells

NAR Cancer(2020)10.1093/narcan/zcaa013

N/A

0DataRank · unranked

50 citations

Albino Bacolla, Haibo Wang, Zu Ye, Erika N. Guerrero, Wei Jiang +6 more